| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS154D07 | Sequence | 485 | 011855 (4) | ref|XP_008805392.1| | 9e-26 | PREDICTED: 3-ketoacyl-CoA synthase 4-like [Phoenix dactylifera] | |||||
| JMSF029B22 | Sequence | 602 | 003830 (3) | ref|XP_009760261.1| | 1e-109 | PREDICTED: 3-ketoacyl-CoA synthase 4 [Nicotiana sylvestris] | 640 | 011855 (4) | emb|CDP07508.1| | 1e-74 | unnamed protein product [Coffea canephora] |
| JMSF035L06 | Sequence | 662 | 003830 (3) | ref|XP_009760261.1| | 1e-108 | PREDICTED: 3-ketoacyl-CoA synthase 4 [Nicotiana sylvestris] | 652 | 011855 (4) | gb|KDO49072.1| | 1e-70 | hypothetical protein CISIN_1g010687mg [Citrus sinensis] |
| JMSF041H03 | Sequence | 662 | 003830 (3) | ref|XP_009760261.1| | 2e-109 | PREDICTED: 3-ketoacyl-CoA synthase 4 [Nicotiana sylvestris] | 604 | 011855 (4) | gb|KDO49072.1| | 3e-69 | hypothetical protein CISIN_1g010687mg [Citrus sinensis] |
This contig is upended
. : . : . : . : . : . :
rJMSF035L06+ TCTTCTCGACATTGATA
____________________________________________________________
consensus TCTTCTCGACATTGATA
. : . : . : . : . : . :
rJMSF041H03+ AAGAACATCAAGCCATATATTCCAGATTTTCAAGTTGGCCTT
rJMSF035L06+ ATCAAGAAGTTGTACAATAAGAACATCAAGCCATATATTCCAGA-TTTCAAGTTGGCCTT
rJMSF029B22+ AAGAACATCAAGCCATATATTCCAGA-TTTCAAGTTGGCCTT
____________________________________________________________
consensus ATCAAGAAGTTGTACAATAAGAACATCAAGCCATATATTCCAGA-TTTCAAGTTGGCCTT
. : . : . : . : . : . :
rJMSF041H03+ CGAACACTTCTGCATACATGCTGGGGGAAGGGCAGTGATTGATGAACTAGAAATGAATCT
rJMSF035L06+ CGAACACTTCTGCATACATGCTGGGGGAAGGGCAGTGATTGATGAACTAGAAATGAATCT
rJMSF029B22+ CGAACACTTCTGCATACATGCTGGGGGAAGGGCAGTGATTGATGAACTAGAAATGAATCT
____________________________________________________________
consensus CGAACACTTCTGCATACATGCTGGGGGAAGGGCAGTGATTGATGAACTAGAAATGAATCT
. : . : . : . : . : . :
rJMSF041H03+ CCAACTGCTTCCAAGTCATGTAGAGGCCTCCCGGATGACACTACATCGCTTTGGTAACAC
rJMSF035L06+ CCAACTGCTTCCAAGTCATGTAGAGGCCTCCCGGATGACACTACATCGCTTTGGTAACAC
rJMSF029B22+ CCAACTGCTTCCAAGTCATGTAGAGGCCTCCCGGATGACACTACATCGCTTTGGTAACAC
____________________________________________________________
consensus CCAACTGCTTCCAAGTCATGTAGAGGCCTCCCGGATGACACTACATCGCTTTGGTAACAC
. : . : . : . : . : . :
rJMSF041H03+ TTCATCCAGCTCCATTTGGTATGAGTTGGCATACACCGAGGCCAAGGGAAGGATGCGGAG
rJMSF035L06+ TTCATCCAGCTCCATTTGGTATGAGTTGGCATACACCGAGGCCAAGGGAAGGATGCGGAG
rJMSF029B22+ TTCATCCAGCTCCATTTGGTATGAGTTGGCATACACCGAGGCCAAGGGAAGGATGCGGAG
JMFS154D07+ TGCGGAG
____________________________________________________________
consensus TTCATCCAGCTCCATTTGGTATGAGTTGGCATACACCGAGGCCAAGGGAAGGATGCGGAG
. : . : . : . : . : . :
rJMSF041H03+ AGGACACCGAGTCTGGCAGATTGCATTTGGGAGTGGTTTCAAGTGCAACAGTGCGGTTTG
rJMSF035L06+ AGGACACCGAGTCTGGCAGATTGCATTTGGGAGTGGTTTCAAGTGCAACAGTGCGGTTTG
rJMSF029B22+ AGGACACCGAGTCTGGCAGATTGCATTTGGGAGTGGTTTCAAGTGCAACAGTGCGGTTTG
JMFS154D07+ AGGACACCGAGTCTGGCAGATTGCATTTGGGAGTGGTTTCAAGTGCAACAGTGCGGTTTG
____________________________________________________________
consensus AGGACACCGAGTCTGGCAGATTGCATTTGGGAGTGGTTTCAAGTGCAACAGTGCGGTTTG
. : . : . : . : . : . :
rJMSF041H03+ GCAGGCACTTCGTAATGTGAAACCATCCCCTAATAGCCCGTGGGAGGATTGTATTGACAG
rJMSF035L06+ GCAGGCACTTCGTAATGTGAAACCATCCCCTAATAGCCCGTGGGAGGATTGTATTGACAG
rJMSF029B22+ GCAGGCACTTCGTAATGTGAAACCATCCCCTAATAGCCCGTGGGAGGATTGTATTGACAG
JMFS154D07+ GCAGGCACTTCGTAATGTGAAACCATCCCCTAATAGCCCGTGGGAGGATTGTATTGACAG
____________________________________________________________
consensus GCAGGCACTTCGTAATGTGAAACCATCCCCTAATAGCCCGTGGGAGGATTGTATTGACAG
. : . : . : . : . : . :
rJMSF041H03+ GTATCCAGTAAAAATAGTGTCATAGCACAACAGCTCACGGTGGTAACTCCATGTAGGGTG
rJMSF035L06+ GTATCCAGTAAAAATAGTGTCATAGCACAACAGCTCACGGTGGTAACTCCATGTAGGGTG
rJMSF029B22+ GTATCCAGTAAAAATAGTGTCATAGCACAACAGCTCACGGTGGTAACTCCATGTAGGGTG
JMFS154D07+ GTATCCAGTAAAAATAGTGTCATAGCACAACAGCTCACGGTGGTAACTCCATGTAGGGTG
____________________________________________________________
consensus GTATCCAGTAAAAATAGTGTCATAGCACAACAGCTCACGGTGGTAACTCCATGTAGGGTG
. : . : . : . : . : . :
rJMSF041H03+ TGTATTGCTGATCAGTAGTTTGTTGCCCAAGCCC-TTTTTTATGTAGCGTTTGTACTACT
rJMSF035L06+ TGTATTGCTGATCAGTAGTTTGTTGCCCAAGCCC-TTTTTTATGTAGCGTTTGTACTACT
rJMSF029B22+ TGTATTGCTGATCAGTAGTTTGTTGCCCAAGCCCTTTTTTTATGTAGCGTTTGTACTACT
JMFS154D07+ TGTATTGCTGATCAGTAGTTTGTTGCCCAAGCCC-TTTTTTATGTAGCGTTTGTACTACT
____________________________________________________________
consensus TGTATTGCTGATCAGTAGTTTGTTGCCCAAGCCC-TTTTTTATGTAGCGTTTGTACTACT
. : . : . : . : . : . :
rJMSF041H03+ TGTTGGTTCTTTCTTTTTTCTTTTTTTCCACCTTTTCGGGTTCTGTGTTGGAAGTTATAC
rJMSF035L06+ TGTTGGTTCTTTCTTTTTTCTTTTTTTCCACCTTTTCGGGTTCTGTGTTGGAAGTTATAC
rJMSF029B22+ TGTTGGTTCTTTCTTTTTTCTTTTTTTCCACCTTTTCGGGTTCTGTGTTGGAAGTTATAC
JMFS154D07+ TGTTGGTTCTTTCTTTTTTCTTTTTTTCCACCTTTTCGGGTTCTGTGTTGGAAGTTATAC
____________________________________________________________
consensus TGTTGGTTCTTTCTTTTTTCTTTTTTTCCACCTTTTCGGGTTCTGTGTTGGAAGTTATAC
. : . : . : . : . : . :
rJMSF041H03+ TTTGGTTCAATCATCTTTTTCTCTGGATACTCTAATGTTGTAATGCACTATTANCAGTCT
rJMSF035L06+ TTTGGTTCAATCATCTTTTTCTCTGGATACTCTAATGTTGTAATGCACTATTACCAGTCT
rJMSF029B22+ TTTGGTTCAATCATCTTTTTCTCTGGATACTCTAATGTTGTAATGCACTATTA-CAGTCT
JMFS154D07+ TTTGGTTCAATCATCTTTTTCTCTGGATACTCTAATGTTGTAATGCACTATTA-CAGTCT
____________________________________________________________
consensus TTTGGTTCAATCATCTTTTTCTCTGGATACTCTAATGTTGTAATGCACTATTACCAGTCT
. : . : . : . : . : . :
rJMSF041H03+ GTTCCTTCTGCAGGCTATTAA
rJMSF035L06+ GTTCCTTCTGCAGGCTATTAAACACTACAAATGTACT
rJMSF029B22+ GTTCCTTCTGCAGGCTATTAAACACTACAAATGTACTATTGGTTGCATT
JMFS154D07+ GTTCCTTCTGCAGGCTATTAAACACTACAAATGTACTATTGGTTGCATTTAAAAGAAAAA
____________________________________________________________
consensus GTTCCTTCTGCAGGCTATTAAACACTACAAATGTACTATTGGTTGCATTTAAAAGAAAAA
. : . : . : . : . : . :
JMFS154D07+ TTCATTGTTCTATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGAACTAGTTCTC
____________________________________________________________
consensus TTCATTGTTCTATTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGAACTAGTTCTC