Contig 011852:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS013H05Sequence559011852 (4)
JMFS125E04Sequence555011852 (4)
JMFS132A09Sequence626011852 (4)
JMFS148A04Sequence627011852 (4)

Alignment

This contig is upended


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JMFS013H05+                                  CAGCAGGCCAATTACTTTAACCAATTCAAATTGAATN
JMFS132A09+            TCCAATAATCCAATTCAGGGACCAGCAGGCCAATTACTTTAACCAATTCAAATTGAATT
JMFS148A04+                                            ATTACTTTAACCAATTCAAATTGAATT
                      ____________________________________________________________
consensus              TCCAATAATCCAATTCAGGGACCAGCAGGCCAATTACTTTAACCAATTCAAATTGAATT
 
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JMFS013H05+           TGTAA-TATTTCCAACAACCTACCCAACAGTCTCAGAGAAAGCTGCTACTTTTACCATAA
JMFS132A09+           TGTAATTATTTCCAACAACCTACCCAACAGTCTCAGAGAAAGCTGCTACTTTTACCATAA
JMFS125E04+                                                      TGCTACTTTTACCATAA
JMFS148A04+           TGTAATTATTTCCAACAACCTACCCAACAGTCTCAGAGAAAGCTGCTACTTTTACCATAA
                      ____________________________________________________________
consensus             TGTAATTATTTCCAACAACCTACCCAACAGTCTCAGAGAAAGCTGCTACTTTTACCATAA
 
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JMFS013H05+           ACTCCAAACCCAAAATTGGAAAACAAGTTAAAACAACGCAGTGGGCTACACGCACATGCA
JMFS132A09+           ACTCCAAACCCAAAATTGGAAAACAAGTTAAAACAACGCAGTGGGCTACACGCACATGCA
JMFS125E04+           ACTCCAAACCCAAAATTGGAAAACAAGTTAAAACAACGCAGTGGGCTACACGCACATGCA
JMFS148A04+           ACTCCAAACCCAAAATTGGAAAACAAGTTAAAACAACGCAGTGGGCTACACGCACATGCA
                      ____________________________________________________________
consensus             ACTCCAAACCCAAAATTGGAAAACAAGTTAAAACAACGCAGTGGGCTACACGCACATGCA
 
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JMFS013H05+           TTGTATGTATGTGTGCGTGTATGTTATATACACGTATGTATATTTGTATGTATGCGTATA
JMFS132A09+           TTGTATGTATGTGTGCGTGTATGTTATATACACGTATGTATATTTGTATGTATGCGTATA
JMFS125E04+           TTGTATGTATGTGTGCGTGTATGTTATATACACGTATGTATATTTGTATGTATGCGTATA
JMFS148A04+           TTGTATGTATGTGTGCGTGTATGTTATATACACGTATGTATATTTGTATGTATGCGTATA
                      ____________________________________________________________
consensus             TTGTATGTATGTGTGCGTGTATGTTATATACACGTATGTATATTTGTATGTATGCGTATA
 
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JMFS013H05+           ACTATTTGGTTTTTACTGCATACATAGCTGGCAGCCAGCCACTGGAATTTCTCTCGAGTG
JMFS132A09+           ACTATTTGGTTTTTACTGCATACATAGCTGGCAGCCAGCCACTGGAATTTCTCTCGAGTG
JMFS125E04+           ACTATTTGGTTTTTACTGCATACATAGCTGGCAGCCAGCCACTGGAATTTCTCTCGAGTG
JMFS148A04+           ACTATTTGGTTTTTACTGCATACATAGCTGGCAGCCAGCCACTGGAATTTCTCTCGAGTG
                      ____________________________________________________________
consensus             ACTATTTGGTTTTTACTGCATACATAGCTGGCAGCCAGCCACTGGAATTTCTCTCGAGTG
 
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JMFS013H05+           GGGCCGAGCTTAGAACCCAAAACCACAGTCAATATCAGCCGCACAAATTTCCAAACCAAA
JMFS132A09+           GGGCCGAGCTTAGAACCCAAAACCACAGTCAATATCAGCCGCACAAATTTCCAAACCAAA
JMFS125E04+           GGGCCGAGCTTAGAACCCAAAACCACAGTCAATATCAGCCGCACAAATTTCCAAACCAAA
JMFS148A04+           GGGCCGAGCTTAGAACCCAAAACCACAGTCAATATCAGCCGCACAAATTTCCAAACCAAA
                      ____________________________________________________________
consensus             GGGCCGAGCTTAGAACCCAAAACCACAGTCAATATCAGCCGCACAAATTTCCAAACCAAA
 
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JMFS013H05+           TTTGGAAAGCTTCAGCAACTTAGAATTAATGCATACAATTCAATCTCTGCATGTTTGTAA
JMFS132A09+           TTTGGAAAGCTTCAGCAACTTAGAATTAATGCATACAATTCAATCTCTGCATGTTTGTAA
JMFS125E04+           TTTGGAAAGCTTCAGCAACTTAGAATTAATGCATACAATTCAATCTCTGCATGTTTGTAA
JMFS148A04+           TTTGGAAAGCTTCAGCAACTTAGAATTAATGCATACAATTCAATCTCTGCATGTTTGTAA
                      ____________________________________________________________
consensus             TTTGGAAAGCTTCAGCAACTTAGAATTAATGCATACAATTCAATCTCTGCATGTTTGTAA
 
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JMFS013H05+           AAATTTTGATAGCTCCAAAAGGTGAACGAAATCGATCTGAAATGAATAATACCCGTATCC
JMFS132A09+           AAATTTTGATAGCTCCAAAAGGTGAACGAAATCGATCTGAAATGAATAATACCCGTATCC
JMFS125E04+           AAATTTTGATAGCTCCAAAAGGTGAACGAAATCGATCTGAAATGAATAATACCCGTATCC
JMFS148A04+           AAATTTTGATAGCTCCAAAAGGTGAACGAAATCGATCTGAAATGAATAATACCCGTATCC
                      ____________________________________________________________
consensus             AAATTTTGATAGCTCCAAAAGGTGAACGAAATCGATCTGAAATGAATAATACCCGTATCC
 
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JMFS013H05+           ACTCTACCCTGTTTCACCTAAAAATTCAAAGAACCTGAAGAGAGATAGCAAGACACAGTT
JMFS132A09+           ACTCTACCCTGTTTCACCTAAAAATTCAAAGAACCTGAAGAGAGATAGCAAGACACAGTT
JMFS125E04+           ACTCTACCCTGTTTCACCTAAAAATTCAAAGAACCTGAAGAGAGATAGCAAGACACAGTT
JMFS148A04+           ACTCTACCCTGTTTCACCTAAAAATTCAAAGAACCTGAAGAGAGATAGCAAGACACAGTT
                      ____________________________________________________________
consensus             ACTCTACCCTGTTTCACCTAAAAATTCAAAGAACCTGAAGAGAGATAGCAAGACACAGTT
 
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JMFS013H05+           GCAGAAAAGAAAAAACTGCGAACGAGAGAGGT                            
JMFS132A09+           GCAGAAAAGAAAAAACTGCGAACGAGAGAGGTGAGAAGAGAAACATAGGTTCCTGCGTTT
JMFS125E04+           GCAGAAAAGAAAAAACTGCGAACGAGAGAGGTGAGAAGAGAAACATAGGTTCCTGCGTTT
JMFS148A04+           GCAGAAAAGAAAAAACTGCGAACGAGAGAGGTGAGAAGAGAAACATAGGTTCCTGCGTTT
                      ____________________________________________________________
consensus             GCAGAAAAGAAAAAACTGCGAACGAGAGAGGTGAGAAGAGAAACATAGGTTCCTGCGTTT
 
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JMFS132A09+           CCCGGTGGTAGAATCATTCAGATCAAA                                 
JMFS125E04+           CCCGGTGGTAGAATCATTCAGATCAAACCGACAGAAGGGGATGACTGAGGAGGAGAGA  
JMFS148A04+           CCCGGTGGTAGAATCATTCAGATCAAACCGACAGAAGGGGATGACTGAGGAGGAGAGAGA
                      ____________________________________________________________
consensus             CCCGGTGGTAGAATCATTCAGATCAAACCGACAGAAGGGGATGACTGAGGAGGAGAGAGA