Contig 011848:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS057G03Sequence620011848 (4)
JMFS070E09Sequence613011848 (4)
JMFS084C09Sequence612011848 (4)
JMFS139B01Sequence624011848 (4)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS070E09+              AATCTCCCATACTAACAANACGAATAGGATCACAAGGTCGGATTTACCCAGAAAACA
JMFS084C09+                                                 GGTCGGATTTACCCAGAAAACA
JMFS057G03+                                                 GGTCGGATTTACCCAGAAAACA
JMFS139B01+                                                 GGTCGGATTTACCCAGAAAACA
                      ____________________________________________________________
consensus                AATCTCCCATACTAACAANACGAATAGGATCACAAGGTCGGATTTACCCAGAAAACA
 
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JMFS070E09+           AAAACCCCAATAACACAATCAAATAGCCCAAAAGCCTAAACTAAACCCTCAAGCTACCAA
JMFS084C09+           AAAACCCCAATAACACAATCAAATAGCCCAAAAGCCTAAACTAAACCCTCAAGCTACCAA
JMFS057G03+           AAAACCCCAATAACACAATCAAATAGCCCAAAAGCCTAAACTAAACCCTCAAGCTACCAA
JMFS139B01+           AAAACCCCAATAACACAATCAAATAGCCCAAAAGCCTAAACTAAACCCTCAAGCTACCAA
                      ____________________________________________________________
consensus             AAAACCCCAATAACACAATCAAATAGCCCAAAAGCCTAAACTAAACCCTCAAGCTACCAA
 
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JMFS070E09+           ATCAAGATATATGCACATGCTGCTAAGTTTTGGGTTTCTGCAATTGAAGCAGCAGGCAAA
JMFS084C09+           ATCAAGATATATGCACATGCTGCTAAGTTTTGGGTTTCTGCAATTGAAGCAGCAGGCAAA
JMFS057G03+           ATCAAGATATATGCACATGCTGCTAAGTTTTGGGTTTCTGCAATTGAAGCAGCAGGCAAA
JMFS139B01+           ATCAAGATATATGCACATGCTGCTAAGTTTTGGGTTTCTGCAATTGAAGCAGCAGGCAAA
                      ____________________________________________________________
consensus             ATCAAGATATATGCACATGCTGCTAAGTTTTGGGTTTCTGCAATTGAAGCAGCAGGCAAA
 
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JMFS070E09+           AGTACTAAGAGATGAAATAAAACAGAGGCCAAATCTCACGAAAAGACAATAAAAATAGAA
JMFS084C09+           AGTACTAAGAGATGAAATAAAACAGAGGCCAAATCTCACGAAAAGACAATAAAAATAGAA
JMFS057G03+           AGTACTAAGAGATGAAATAAAACAGAGGCCAAATCTCACGAAAAGACAATAAAAATAGAA
JMFS139B01+           AGTACTAAGAGATGAAATAAAACAGAGGCCAAATCTCACGAAAAGACAATAAAAATAGAA
                      ____________________________________________________________
consensus             AGTACTAAGAGATGAAATAAAACAGAGGCCAAATCTCACGAAAAGACAATAAAAATAGAA
 
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JMFS070E09+           AGAAACAAGACAATATTTGGGATGATCTATAACATAGCAGGTAAACCGTAAATGTGAAAG
JMFS084C09+           AGAAACAAGACAATATTTGGGATGATCTATAACATAGCAGGTAAACCGTAAATGTGAAAG
JMFS057G03+           AGAAACAAGACAATATTTGGGATGATCTATAACATAGCAGGTAAACCGTAAATGTGAAAG
JMFS139B01+           AGAAACAAGACAATATTTGGGATGATCTATAACATAGCAGGTAAACCGTAAATGTGAAAG
                      ____________________________________________________________
consensus             AGAAACAAGACAATATTTGGGATGATCTATAACATAGCAGGTAAACCGTAAATGTGAAAG
 
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JMFS070E09+           CAAGTATAAGGTACAGAATATGGAAAGAAGGGGGAAAAAGTTGCAAACTTTACGGTTTAA
JMFS084C09+           CAAGTATAAGGTACAGAATATGGAAAGAAGGGGGAAAAAGTTGCAAACTTTACGGTTTAA
JMFS057G03+           CAAGTATAAGGTACAGAATATGGAAAGAAGGGGGAAAAAGTTGCAAACTTTACGGTTTAA
JMFS139B01+           CAAGTATAAGGTACAGAATATGGAAAGAAGGGGGAAAAAGTTGCAAACTTTACGGTTTAA
                      ____________________________________________________________
consensus             CAAGTATAAGGTACAGAATATGGAAAGAAGGGGGAAAAAGTTGCAAACTTTACGGTTTAA
 
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JMFS070E09+           CGAGCTTCACAGATAGAAGAAGATGAAAGCAGACAAATCTTGAAAGAACCCAAATAAATT
JMFS084C09+           CGAGCTTCACAGATAGAAGAAGATGAAAGCAGACAAATCTTGAAAGAACCCAAATAAATT
JMFS057G03+           CGAGCTTCACAGATAGAAGAAGATGAAAGCAGACAAATCTTGAAAGAACCCAAATAAATT
JMFS139B01+           CGAGCTTCACAGATAGAAGAAGATGAAAGCAGACAAATCTTGAAAGAACCCAAATAAATT
                      ____________________________________________________________
consensus             CGAGCTTCACAGATAGAAGAAGATGAAAGCAGACAAATCTTGAAAGAACCCAAATAAATT
 
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JMFS070E09+           CTTGATGCATGAAAGAAGAAATCGGGTCAAGTTGAGGTATGTTTATATATGTATGACTGT
JMFS084C09+           CTTGATGCATGAAAGAAGAAATCGGGTCAAGTTGAGGTATGTTTATATATGTATGACTGT
JMFS057G03+           CTTGATGCATGAAAGAAGAAATCGGGTCAAGTTGAGGTATGTTTATATATGTATGACTGT
JMFS139B01+           CTTGATGCATGAAAGAAGAAATCGGGTCAAGTTGAGGTATGTTTATATATGTATGACTGT
                      ____________________________________________________________
consensus             CTTGATGCATGAAAGAAGAAATCGGGTCAAGTTGAGGTATGTTTATATATGTATGACTGT
 
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JMFS070E09+           ACCGAAGTATTTGAGCTTATACCCAAAAGAGAGCGGCGGAAACTGACGCTTCTAGACTAT
JMFS084C09+           ACCGAAGTATTTGAGCTTATACCCAAAAGAGAGCGGCGGAAACTGACGCTTCTAGACTAT
JMFS057G03+           ACCGAAGTATTTGAGCTTATACCCAAAAGAGAGCGGCGGAAACTGACGCTTCTAGACTAT
JMFS139B01+           ACCGAAGTATTTGAGCTTATACCCAAAAGAGAGCGGCGGAAACTGACGCTTCTAGACTAT
                      ____________________________________________________________
consensus             ACCGAAGTATTTGAGCTTATACCCAAAAGAGAGCGGCGGAAACTGACGCTTCTAGACTAT
 
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JMFS070E09+           GAAGATTTGAAGGTAAGACTGCAAGAAAGAAAGAGTTCCTCTTCCTGGAGCTTTCAGATT
JMFS084C09+           GAAGATTTGAAGGTAAGACTGCAAGAAAGAAAGAGTTCCTCTTCCTGGAGCTTTCAGATT
JMFS057G03+           GAAGATTTGAAGGTAAGACTGCAAGAAAGAAAGAGTTCCTCTTCCTGGAGCTTTCAGATT
JMFS139B01+           GAAGATTTGAAGGTAAGACTGCAAGAAAGAAAGAGTTCCTCTTCCTGGAGCTTTCAGATT
                      ____________________________________________________________
consensus             GAAGATTTGAAGGTAAGACTGCAAGAAAGAAAGAGTTCCTCTTCCTGGAGCTTTCAGATT
 
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JMFS070E09+           CCAAAGATGAAACTTC                                            
JMFS084C09+           CCAAAGATGAAACTTCGTGGGAACGAGGAACGACCCACGTTCCAAACTTT          
JMFS057G03+           CCAAAGATGAAACTTCGTGGGAACGAGGAACGACCCACGTTCCAAACTTTTTGCAATA  
JMFS139B01+           CCAAAGATGAAACTTCGTGGGAACGAGGAACGACCCACGTTCCAAACTTTTTGCAATATT
                      ____________________________________________________________
consensus             CCAAAGATGAAACTTCGTGGGAACGAGGAACGACCCACGTTCCAAACTTTTTGCAATATT