Contig 011845:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS110E09Sequence611011845 (2)ref|XP_009596670.1|1e-15PREDICTED: RNA-binding protein 5 isoform X4 [Nicotiana tomentosiformis]
JMFS135H10Sequence653011845 (2)ref|XP_009596668.1|4e-34PREDICTED: RNA-binding protein 5 isoform X2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS110E09+                                                         AGTAGCAGAAGGAG
                      ____________________________________________________________
consensus                                                           AGTAGCAGAAGGAG
 
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JMFS110E09+           CCACAGAGTAGCTGTCATGGTGTCGTCTGTCATCATGGTCCCTACGCCTTTCACTTCTAT
                      ____________________________________________________________
consensus             CCACAGAGTAGCTGTCATGGTGTCGTCTGTCATCATGGTCCCTACGCCTTTCACTTCTAT
 
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JMFS110E09+           CATATCGGATATCATCATAACTGTCCTCTCTATGACTACGGCTATGACTTCGACTTCGAG
JMFS135H10+                  GATATCATCATAACTGTCCTCTCTATGACTACGGCTATGACTTCGACTTCGAG
                      ____________________________________________________________
consensus             CATATCGGATATCATCATAACTGTCCTCTCTATGACTACGGCTATGACTTCGACTTCGAG
 
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JMFS110E09+           GAGACCTTGACCTCAGGCGATCATCACGATCGCGAGACCGTGAACGGGAACGCTCATGCC
JMFS135H10+           GAGACCTTGACCTCAGGCGATCATCACGATCGCGAGACCGTGAACGGGAACGCTCATGCC
                      ____________________________________________________________
consensus             GAGACCTTGACCTCAGGCGATCATCACGATCGCGAGACCGTGAACGGGAACGCTCATGCC
 
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JMFS110E09+           TTGTATATGGACTGTGATCTCTTTCCCGGCTTGAGGCTCTCCTATCATGCTCACGATCAC
JMFS135H10+           TTGTATATGGACTGTGATCTCTTTCCCGGCTTGAGGCTCTCCTATCATGCTCACGATCAC
                      ____________________________________________________________
consensus             TTGTATATGGACTGTGATCTCTTTCCCGGCTTGAGGCTCTCCTATCATGCTCACGATCAC
 
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JMFS110E09+           GGGAATCACGCCGTCTCCAGTTACTGTCTCTCCTACTGCCTCTGTCATAGTCAGAATCAT
JMFS135H10+           GGGAATCACGCCGTCTCCAGTTACTGTCTCTCCTACTGCCTCTGTCATAGTCAGAATCAT
                      ____________________________________________________________
consensus             GGGAATCACGCCGTCTCCAGTTACTGTCTCTCCTACTGCCTCTGTCATAGTCAGAATCAT
 
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JMFS110E09+           AACTGTGTCTACCATAATCATAGTCCCTTTAATGGCTATCTTCCCTGCTTTGATGAGAAA
JMFS135H10+           AACTGTGTCTACCATAATCATAGTCCCTTTCATGGCTATCTTCCCTGCTTTGATGAGAAA
                      ____________________________________________________________
consensus             AACTGTGTCTACCATAATCATAGTCCCTTTCATGGCTATCTTCCCTGCTTTGATGAGAAA
 
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JMFS110E09+           CGCGATGGCGATAATCATAATGCTCATAAGCATAATCATCTCTGTCACGTCCTCCATACC
JMFS135H10+           CGCGATGGCGATAATCATAATGCTCATAAGCATAATCATCTCTGTCACGTCCTCCATACC
                      ____________________________________________________________
consensus             CGCGATGGCGATAATCATAATGCTCATAAGCATAATCATCTCTGTCACGTCCTCCATACC
 
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JMFS110E09+           TGGTGGGC                                                    
JMFS135H10+           TGGTGGGCCTGCCAAATCCAAGATCATGGTTGTTGTCAAACTGTGATGACCACCCTGAAT
                      ____________________________________________________________
consensus             TGGTGGGCCTGCCAAATCCAAGATCATGGTTGTTGTCAAACTGTGATGACCACCCTGAAT
 
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JMFS135H10+           ACACTAATCTCGTGATACTTATCAGCTTCAAGAAAAGAATCTGTTTAATGATATAAATCA
                      ____________________________________________________________
consensus             ACACTAATCTCGTGATACTTATCAGCTTCAAGAAAAGAATCTGTTTAATGATATAAATCA
 
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JMFS135H10+           ACATACATCTTCTCATTCCTCCTGGAATCCCTATCCAGTGGATATTCTTCTTCATAACTT
                      ____________________________________________________________
consensus             ACATACATCTTCTCATTCCTCCTGGAATCCCTATCCAGTGGATATTCTTCTTCATAACTT
 
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JMFS135H10+           CTTCTCCTTGTTGGAGCCCACAATCCAACTGGTGGTGGTGGATGTGGGTACTGCTCCCTC
                      ____________________________________________________________
consensus             CTTCTCCTTGTTGGAGCCCACAATCCAACTGGTGGTGGTGGATGTGGGTACTGCTCCCTC
 
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JMFS135H10+           TCCAGAATATCACGGTGAAACCCACTCCTAGGGTAAATATTCTCTCTCCCTCGTGCCGAA
                      ____________________________________________________________
consensus             TCCAGAATATCACGGTGAAACCCACTCCTAGGGTAAATATTCTCTCTCCCTCGTGCCGAA