Contig 011843:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS131C07Sequence614011843 (3)ref|XP_010652404.1|1e-44PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850
JMFS168E05Sequence610011843 (3)ref|XP_009781301.1|3e-46PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850
JMSF002M04Sequence346011843 (3)gb|KCW89026.1|1e-17hypothetical protein EUGRSUZ_A01353, partial [Eucalyptus grandis]501019213

Alignment

This contig is upended


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JMFS168E05+                 TTTGGAAAATCCAAATTGAACTCATTAGCACGGAGGTTGAGATGCTTCAACAAA
JMFS131C07+                                                GGAGGTTGAGATGATTCAACAAA
                      ____________________________________________________________
consensus                   TTTGGAAAATCCAAATTGAACTCATTAGCACGGAGGTTGAGATGCTTCAACAAA
 
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JMFS168E05+           GGCATAGTATGGAATTTAGACCAATCCGGAGTTTCCAGATTATTCACTCTCAGATCCAGG
JMFS131C07+           GGCATAGCATGGAATTCAGACCAATTGGGAGTTTTCAGATTATTCACTCCCAGATCCAAG
                      ____________________________________________________________
consensus             GGCATAGTATGGAATTTAGACCAATTGGGAGTTTTCAGATTATTCACTCTCAGATCCAGG
 
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JMFS168E05+           TACCTCAGATTTTAAAGATTGCTAATTTCAAATGGAATCACATCTTCCAGAAAGTTTTTG
JMFS131C07+           TACCTCAGGTTTTGAAGATTACTAATTTCAAATGGAATCACATCCTCCAGAATGTTTCTG
                      ____________________________________________________________
consensus             TACCTCAGGTTTTGAAGATTGCTAATTTCAAATGGAATCACATCTTCCAGAATGTTTTTG
 
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JMFS168E05+           AAACAACTAAAGTACCTGAGTTGTGTCAACTGCCCAACCTCTACTGGTATTGCCCCCGTG
JMFS131C07+           AAACAACTAAAGTAACTGAGCTCTGTCAACTGCCCAACCTCTGCTGGTATTGCCCCCGTG
                      ____________________________________________________________
consensus             AAACAACTAAAGTACCTGAGTTGTGTCAACTGCCCAACCTCTGCTGGTATTGCCCCCGTG
 
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JMSF002M04+                          AAGTCCAGAAAAGTGAGCTTAAGGAGGCTGTTGATAGCAAACGGG
JMFS168E05+           AAGTTGTTATTGCTCAAGTCCAGAAAAGTGAGCTTAAGGAGGCTGTTGATAGCAAACGGG
JMFS131C07+           AAGTTGTTATTGCTCAAGTCCAGAAAAGTGAGCTTAAGGAGGGTGTTGATAGCAGATGGT
                      ____________________________________________________________
consensus             AAGTTGTTATTGCTCAAGTCCAGAAAAGTGAGCTTAAGGAGGCTGTTGATAGCAAACGGG
 
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JMSF002M04+           ATCATTCCGCTCAAACTATTGTTATTGAGATTGATCCGAGTAAGATTAGGTAGTAAGGAA
JMFS168E05+           ATCATTCCGCTCAAACTATTGTTATTGAGATTGATCCGAGTAAGATTAGGTAGTAAGGAA
JMFS131C07+           ATCACTCCGCTCAAACTATTGTTATTGAGATTGATGCGAGTCAGATTAGGAAGTACGGAA
                      ____________________________________________________________
consensus             ATCATTCCGCTCAAACTATTGTTATTGAGATTGATCCGAGTAAGATTAGGTAGTAAGGAA
 
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JMSF002M04+           AAACGGAGTAGTTCAAGTGTACCTCTGATGTTCCCATGAGGTAGGTTGAGCTCTGAAACA
JMFS168E05+           AAACGGAGTAGTTCAAGTGTACCTCTGATGTTCCCATGAGGTAGGTTGAGCTCTGAAACA
JMFS131C07+           AAAGCGAGTGGTTCAAGTGTACCTCTGATGTTCCCATGGGGTAGATTCAGCTCTGAAACA
                      ____________________________________________________________
consensus             AAACGGAGTAGTTCAAGTGTACCTCTGATGTTCCCATGAGGTAGGTTGAGCTCTGAAACA
 
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JMSF002M04+           GATCCACCTCGGTTACAGGTGATTCCCTCCCAATTGCACAAATTTGTGAGGTTGTTGACA
JMFS168E05+           GATCCACCTCGGTTACAGGTGATTCCCTCCCAATTGCACAAATTTGTGAGGTTGTTGACA
JMFS131C07+           GAACCAGCGGAGCTGCAGATGATGCCCTCCCAACTGCACACATTTGTGAGGTTGTTGACA
                      ____________________________________________________________
consensus             GATCCACCTCGGTTACAGGTGATTCCCTCCCAATTGCACAAATTTGTGAGGTTGTTGACA
 
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JMSF002M04+           GACCAAGAAGAATCCAGTAAAGAAGTTGAAGATGATGATGATGATGATAGGCCATTGTTT
JMFS168E05+           GACCAAGAAGAATCCAGTAAAGAAGTTGAAGATGATGATGATGATGATAGGCCATTGTTT
JMFS131C07+           GACCATGAAGAATCCAGTAAAGAAGT---------AGATGATGATAATAGGGCATTGTTC
                      ____________________________________________________________
consensus             GACCAAGAAGAATCCAGTAAAGAAGTTGAAGATGATGATGATGATGATAGGCCATTGTTT
 
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JMSF002M04+           TTCCATTGTAAGAGAGCTTCAGCTTCTTCTTTGTTTGCATGTAAGGGTGTGGTTTTTAC 
JMFS168E05+           TTCCATTGTAAGAGAGCTTCAGCTTCTTCTTTGTTTGCATGTAAGGGTGTGGTTTTTACT
JMFS131C07+           TTCCATTGTAAGAGAGCTTCGGCTTCTTCTTTGTTTGCATGTAAGGGTGCGGTGTTTACT
                      ____________________________________________________________
consensus             TTCCATTGTAAGAGAGCTTCAGCTTCTTCTTTGTTTGCATGTAAGGGTGTGGTTTTTACT
 
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JMFS168E05+           GCGGCA                                                      
JMFS131C07+           GTGGCAAGAGAACAAAGGATTTGAAAAAAAAGAGTGAAAATGGAGATTCTCATCATTGTT
                      ____________________________________________________________
consensus             GTGGCAAGAGAACAAAGGATTTGAAAAAAAAGAGTGAAAATGGAGATTCTCATCATTGTT