Contig 011836:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014I14Sequence533011826 (5)gb|AAP83138.1|2e-43lipoxygenase [Nicotiana attenuata]638011836 (2)ref|NP_001275115.1|8e-97linoleate 13S-lipoxygenase 3-1, chloroplastic [Solanum tuberosum] sp|O24371.1|LO
JMFS126E07Sequence633011836 (2)ref|XP_009771566.1|4e-118PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF014I14-                                                      ATAAATAAGCATAGAT
                      ____________________________________________________________
consensus                                                         ATAAATAAGCATAGAT
 
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rJMFF014I14-          ACATCATATTCAACATTATATTGTCCACACAAAATAAACTTGCATAGTTACATTCATGAT
                      ____________________________________________________________
consensus             ACATCATATTCAACATTATATTGTCCACACAAAATAAACTTGCATAGTTACATTCATGAT
 
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rJMFF014I14-          TAGATTTATATATAGAACAATTAGATAGTGACGCTGTTGGGAATACCTCTACATGTAACC
                      ____________________________________________________________
consensus             TAGATTTATATATAGAACAATTAGATAGTGACGCTGTTGGGAATACCTCTACATGTAACC
 
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rJMFF014I14-          CCGGGACCGGAGCTCGGAGCAAGAAGTTCATAAGGTATAACGCCGGCACCGCACCTATTC
                      ____________________________________________________________
consensus             CCGGGACCGGAGCTCGGAGCAAGAAGTTCATAAGGTATAACGCCGGCACCGCACCTATTC
 
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rJMFF014I14-          TTCAGGCTCGGGTTGCGGTTCCGGCTATCAATCTCCTCCTCAATCTGACCAATATCCGCC
                      ____________________________________________________________
consensus             TTCAGGCTCGGGTTGCGGTTCCGGCTATCAATCTCCTCCTCAATCTGACCAATATCCGCC
 
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rJMFF014I14-          GAGAATTCAAAGAACGCCTCAACCATGGCAGCGTCCGACGTCCACGTCGAAGGATGCGGT
                      ____________________________________________________________
consensus             GAGAATTCAAAGAACGCCTCAACCATGGCAGCGTCCGACGTCCACGTCGAAGGATGCGGT
 
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rJMFF014I14-          CTCTCTCCCAAGTATTCCTCGTCCGGGGAATGAGTAGACAGTGTATCCACGACGGCTATC
JMFS126E07+                                      GAATGAGTAGACAGTGTATCCACGACGGCTATC
                      ____________________________________________________________
consensus             CTCTCTCCCAAGTATTCCTCGTCCGGGGAATGAGTAGACAGTGTATCCACGACGGCTATC
 
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rJMFF014I14-          AGCTTCGTCGCGTCCGGCTTGCTCGGCAGCGCCTTGAAGAAGTACTTTTGCGGGTCGGAG
JMFS126E07+           AGCTTCGTCGCGTCCGGCTTGCTCGGCAGCGCCTTGAAGAAGTACTTNTGCGGGTCGGAG
                      ____________________________________________________________
consensus             AGCTTCGTCGCGTCCGGCTTGCTCGGCAGCGCCTTGAAGAAGTACTTTTGCGGGTCGGAG
 
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rJMFF014I14-          ACGAACACGGCGTACTCCGGGTCGTTCTCGTCGGGGATTAATCGCCGCATCAGCGTCGGC
JMFS126E07+           ACGAACACGGCGTACTCCGGGTCGTTCTCGTCGGGGATTAATCGCCGCATCAGCGTCGGC
                      ____________________________________________________________
consensus             ACGAACACGGCGTACTCCGGGTCGTTCTCGTCGGGGATTAATCGCCGCATCAGCGTCGGC
 
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rJMFF014I14-          CGGTTCGGCAGGTACCCACCGTAGGGATACTGCCCGAAATTTAGCGCGGCGTGCTGGGCG
JMFS126E07+           CGGTTCGGCAGGTACCCACCGTAGGGATACTGCCCGAAATTTAGCGCGGCGTGCTGGGCG
                      ____________________________________________________________
consensus             CGGTTCGGCAGGTACCCACCGTAGGGATACTGCCCGAAATTTAGCGCGGCGTGCTGGGCG
 
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rJMFF014I14-          GAACATAGCCAAATGATGGTGGTGAGAATGGAAGCCAAATCCGCCGGAGATTCTAAAGTG
JMFS126E07+           GAACATAGCCAAATGATGGTGGTGAGAATGGAAGCCAAATCCGCCGGAGATTCTAAAGTG
                      ____________________________________________________________
consensus             GAACATAGCCAAATGATGGTGGTGAGAATGGAAGCCAAATCCGCCGGAGATTCTAAAGTG
 
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rJMFF014I14-          GGCCACCACTCCGCATTACGCA                                      
JMFS126E07+           GGCCACCACTCCGCATTACGCAGGTCGGCGTGGCCGACGTTGACTGCCTCGGAATACCAC
                      ____________________________________________________________
consensus             GGCCACCACTCCGCATTACGCAGGTCGGCGTGGCCGACGTTGACTGCCTCGGAATACCAC
 
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JMFS126E07+           GCCTGAAGCTCCCGATCGTTGCAGACCCCGTCGGAATCTGCGTAGTAATGGTTCACGTAA
                      ____________________________________________________________
consensus             GCCTGAAGCTCCCGATCGTTGCAGACCCCGTCGGAATCTGCGTAGTAATGGTTCACGTAA
 
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JMFS126E07+           GTCGTGACCCACTTCTGAATCGCCTCCCAAACCAACAGCCCATCCGCCGCGTACGGATAA
                      ____________________________________________________________
consensus             GTCGTGACCCACTTCTGAATCGCCTCCCAAACCAACAGCCCATCCGCCGCGTACGGATAA
 
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JMFS126E07+           TCCTCGATCAGAAGCTTTAGCCCGTGCGGCTGCGTCGGGTCCGCCACCGCCATTCCTCTT
                      ____________________________________________________________
consensus             TCCTCGATCAGAAGCTTTAGCCCGTGCGGCTGCGTCGGGTCCGCCACCGCCATTCCTCTT
 
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JMFS126E07+           CGAATCAGGTCCGCCGGGAGATTTTCAAGGTCGAATCGCCAGAAACTCTTGTAAGCCGCC
                      ____________________________________________________________
consensus             CGAATCAGGTCCGCCGGGAGATTTTCAAGGTCGAATCGCCAGAAACTCTTGTAAGCCGCC
 
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JMFS126E07+           GCGCTAATCTGCATCGCATAACGCCCGGGAGTGAAGCAAGATTCAACAACGCCCTCATTA
                      ____________________________________________________________
consensus             GCGCTAATCTGCATCGCATAACGCCCGGGAGTGAAGCAAGATTCAACAACGCCCTCATTA