Contig 011835:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS019H10Sequence586011835 (5)ref|XP_002302799.2|3e-15hypothetical protein POPTR_0002s18970g [Populus trichocarpa] gb|EEE82072.2| hypo
JMFS092E12Sequence622011835 (5)
JMFS117F08Sequence604011835 (5)gb|EYU46873.1|1e-11hypothetical protein MIMGU_mgv1a000744mg [Erythranthe guttata]
JMFS122F12Sequence577011835 (5)
JMFS133G12Sequence626011835 (5)ref|XP_011005940.1|8e-16PREDICTED: squamosa promoter-binding-like protein 1 isoform X2 [Populus euphrat

Alignment

This contig is upended


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JMFS019H10+                                                TGATGATGGGTTGGGATTGAGAG
JMFS133G12+                                         GGTAATTTGATGATGGGTTGGGATTGAGAG
                      ____________________________________________________________
consensus                                           GGTAATTTGATGATGGGTTGGGATTGAGAG
 
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JMFS019H10+           GTCTGGCAAGGAAAAGATGGCCATCCCATTTCCAATCACTGGGATCCCACTCCAGACTCC
JMFS133G12+           GTCTGGCAAGGAAAAGATGGCCATCCCATTTCCAATCACTGGGATCCCACTCCAGACTCC
JMFS117F08+                       AAAGATGGCCATCCCATTTCCAATCACTGGGATCCCACTCCAGACTCC
JMFS092E12+                                                               CAGACTCC
                      ____________________________________________________________
consensus             GTCTGGCAAGGAAAAGATGGCCATCCCATTTCCAATCACTGGGATCCCACTCCAGACTCC
 
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JMFS019H10+           TTTTCCCCACCGCTCTCAAATCCGCTGCACCCAAATCATAAAAGAGTTGAGCTTGACCTC
JMFS133G12+           TTTTCCCCACCGCTCTCAAATCCGCTGCACCCAAATCATAAAAGAGTTGAGCTTGACCTC
JMFS117F08+           TTTTCCCCACCGCTCTCAAATCCGCTGCACCCAAATCATAAAAGAGTTGAGCTTGACCTC
JMFS092E12+           TTTTCCCCACCGCTCTCAAATCCGCTGCACCCAAATCATAAAAGAGTTGAGCTTGAACTC
                      ____________________________________________________________
consensus             TTTTCCCCACCGCTCTCAAATCCGCTGCACCCAAATCATAAAAGAGTTGAGCTTGACCTC
 
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JMFS019H10+           CAATTCTGGCCTCCATTTATGGGATTACCAGATTTCCAACACTCTAATATTGATAAAAGC
JMFS133G12+           CAATTCTGGCCTCCATTTATGGGATTACCAGATTTCCAACACTCTAATATTGATAAAAGC
JMFS117F08+           CAATTCTGGCCTCCATTTATGGGATTACCAGATTTCCAACACTCTAATATTGATAAAAGC
JMFS092E12+           CAATTCTGGCCTCCATTTATGGGATTACCAGATTTCCAACACTCTAATATTGATAAAAGC
JMFS122F12+                                  ATTACCAGATTTCCAACACTCTAATATTGATAAAAGC
                      ____________________________________________________________
consensus             CAATTCTGGCCTCCATTTATGGGATTACCAGATTTCCAACACTCTAATATTGATAAAAGC
 
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JMFS019H10+           CCCCAAAATACTATAAAGAAAGAAAATTAAAAAAGTCGAAATCTTTTAGCAGGCACAACA
JMFS133G12+           CCCCAAAATACTATAAAGAAAGAAAATTAAAAAAGTCGAAATCTTTTAGCAGGCACAACA
JMFS117F08+           CCCCAAAATACTATAAAGAAAGAAAATTAAAAAAGTCGAAATCTTTTAGCAGGCACAACA
JMFS092E12+           CCCCAAAATACTATAAAGAAAGAAAATTAAAAAAGTCGAAATCTTTTAGCAGGCACAACA
JMFS122F12+           CCCCAAAATACTATAAAGAAAGANAATTAAAAAAGTCGAAATCTTTTAGCAGGCACAACA
                      ____________________________________________________________
consensus             CCCCAAAATACTATAAAGAAAGAAAATTAAAAAAGTCGAAATCTTTTAGCAGGCACAACA
 
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JMFS019H10+           GATCAGAGTCGAAAATTCCCAAATCTCAGCCAAAAGGAGAAAGACCTTAAATGAAGCTAA
JMFS133G12+           GATCAGAGTCGAAAATTCCCAAATCTCAGCCAAAAGGAGAAAGACCTTAAATGAAGCTAA
JMFS117F08+           GATCAGAGTCGAAAATTCCCAAATCTCAGCCAAAAGGAGAAAGACCTTAAATGAAGCTAA
JMFS092E12+           GATCAGAGTCGAAAATTCCCAAATCTCAGCCAAAAGGAGAAAGACCTTAAATGAAGCTAA
JMFS122F12+           GATCAGAGTCGAAAATTCCCAAATCTCAGCCAAAAGGAGAAAGACCTTAAATGAAGCTAA
                      ____________________________________________________________
consensus             GATCAGAGTCGAAAATTCCCAAATCTCAGCCAAAAGGAGAAAGACCTTAAATGAAGCTAA
 
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JMFS019H10+           TCGGCCTCAGTTCGGCCCCAGAAGTCAAGAAACACTACAGAAATAGATCCATGGTTCCAA
JMFS133G12+           TCGGCCTCAGTTCGGCCCCAGAAGTCAAGAAACACTACAGAAATAGATCCATGGTTCCAA
JMFS117F08+           TCGGCCTCAGTTCGGCCCCAGAAGTCAAGAAACACTACAGAAATAGATCCATGGTTCCAA
JMFS092E12+           TCGGCCTCAGTTCGGCCCCAGAAGTCAAGAAACACTACAGAAATAGATCCATGGTTCCAA
JMFS122F12+           TCGGCCTCAGTTCGGCCCCAGAAGTCAAGAAACACTACAGAAATAGATCCATGGTTCCAA
                      ____________________________________________________________
consensus             TCGGCCTCAGTTCGGCCCCAGAAGTCAAGAAACACTACAGAAATAGATCCATGGTTCCAA
 
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JMFS019H10+           TTAAGAGCTACCCACATGCCCGTCTCCTAATTAAATTTTGAAAAAGCTCAAATCCGCTCA
JMFS133G12+           TTAAGAGCTACCCACATGCCCGTCTCCTAATTAAATTTTGAAAAAGCTCAAATCCGCTCA
JMFS117F08+           TTAAGAGCTACCCACATGCCCGTCTCCTAATTAAATTTTGAAAAAGCTCAAATCCGCTCA
JMFS092E12+           TTAAGAGCTACCCACATGCCCGTCTCCTAATTAAATTTTGAAAAAGCTCAAATCCGCTCA
JMFS122F12+           TTAAGAGCTACCCACATGCCCGTCTCCTAATTAAATTTTGAAAAAGCTCAAATCCGCTCA
                      ____________________________________________________________
consensus             TTAAGAGCTACCCACATGCCCGTCTCCTAATTAAATTTTGAAAAAGCTCAAATCCGCTCA
 
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JMFS019H10+           GTCTTGATAACGAACTGCCTCCATACCTCAATTAAGCAAATTGAGCACCGTAAATTCATT
JMFS133G12+           GTCTTGATAACGAACTGCCTCCATACCTCAATTAAGCAAATTGAGCACCGTAAATTCATT
JMFS117F08+           GTCTTGATAACGAACTGCCTCCATACCTCAATTAAGCAAATTGAGCACCGTAAATTCATT
JMFS092E12+           GTCTTGATAACGAACTGCCTCCATACCTCAATTAAGCAAATTGAGCACCGTAAATTCATT
JMFS122F12+           GTCTTGATAACGAACTGCCTCCATACCTCAATTAAGCAAATTGAGCACCGTAAATTCATT
                      ____________________________________________________________
consensus             GTCTTGATAACGAACTGCCTCCATACCTCAATTAAGCAAATTGAGCACCGTAAATTCATT
 
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JMFS019H10+           AATGAAATGAAATCAGTTAAAACTCGGAGTTGGGAGAAAAAAATAGATACAACTAAATCT
JMFS133G12+           AATGAAATGAAATCAGTTAAAACTCGGAGTTGGGAGAAAAAAATAGATACAACTAAATCT
JMFS117F08+           AATGAAATGAAATCAGTTAAAACTCGGAGTTGGGAGAAAAAAATAGATACAACTAAATCT
JMFS092E12+           AATGAAATGAAATCAGTTAAAACTCGGAGTTGGGAGAAAAAAATAGATACAACTAAATCT
JMFS122F12+           AATGAAATGAAATCAGTTAAAACTCGGAGTTGGGAGAAAAAAATAGATACAACTAAATCT
                      ____________________________________________________________
consensus             AATGAAATGAAATCAGTTAAAACTCGGAGTTGGGAGAAAAAAATAGATACAACTAAATCT
 
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JMFS019H10+           TACAGGAACGACCGAGATAAGGA                                     
JMFS133G12+           TACAGGAACGACCGAGATAAGGATGGACGGAAAGCGGCGAACGGCGGGGAGTTGGG    
JMFS117F08+           TACAGGAACGACCGAGATAAGGATGGACGGAAAGCGGCGAACGGCGGGGAGTTGGGCAGA
JMFS092E12+           TACAGGAACGACCGAGATAAGGATGGACGGAAAGCGGCGAACGGCGGGGAGTTGGGCAGA
JMFS122F12+           TACAGGAACGACCGAGATAAGGATGGACGGAAAGCGGCGAACGGCGGGGAGTTGGGCAGA
                      ____________________________________________________________
consensus             TACAGGAACGACCGAGATAAGGATGGACGGAAAGCGGCGAACGGCGGGGAGTTGGGCAGA
 
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JMFS117F08+           GGATGGTTGTAGCTAA                                            
JMFS092E12+           GGATGGTTGTAGCTAAAGCCTAAAGCCGAAAGGTTGGGTGGGATGAGGATGATAAGATGG
JMFS122F12+           GGATGGTTGTAGCTAAAGCCTAAAGCCGAAAGGTTGGGTGGGATGAGGATGATAAGATGG
                      ____________________________________________________________
consensus             GGATGGTTGTAGCTAAAGCCTAAAGCCGAAAGGTTGGGTGGGATGAGGATGATAAGATGG
 
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JMFS092E12+           CGAATGTGAATGCC                                              
JMFS122F12+           CGAATGTGAATGCCGTGGTGGGGTAGGAAGAGAGAGAGAGAGAGTGGCGAGTATGCTGTT
                      ____________________________________________________________
consensus             CGAATGTGAATGCCGTGGTGGGGTAGGAAGAGAGAGAGAGAGAGTGGCGAGTATGCTGTT