Contig 011833:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS071D04Sequence332011833 (3)ref|XP_006355229.1|6e-39PREDICTED: serine/arginine repetitive matrix protein 2-like isoform X3 [Solanum
JMFS076F07Sequence352011833 (3)ref|XP_006355229.1|7e-39PREDICTED: serine/arginine repetitive matrix protein 2-like isoform X3 [Solanum
JMFS120E05Sequence627011833 (3)ref|XP_009619143.1|2e-59PREDICTED: protein starmaker isoform X2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS120E05+                                            GCTTAGGCTCATCTTTCCCTCTTCTTG
                      ____________________________________________________________
consensus                                              GCTTAGGCTCATCTTTCCCTCTTCTTG
 
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JMFS120E05+           TATCCTTCCCCCCATCATTTTTATGATTTTTTGCCCTATCATCTTCATCATCACTCAACA
                      ____________________________________________________________
consensus             TATCCTTCCCCCCATCATTTTTATGATTTTTTGCCCTATCATCTTCATCATCACTCAACA
 
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JMFS120E05+           CAGAATCCAGAGCTAGAGTAGGATCAGGCTGTTTCTTTTGATTCTCGTTTTCAGCTCCTA
                      ____________________________________________________________
consensus             CAGAATCCAGAGCTAGAGTAGGATCAGGCTGTTTCTTTTGATTCTCGTTTTCAGCTCCTA
 
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JMFS120E05+           TCCGAAGTGCTGCTTTCAATTTCTCCATCTGTTTTACCTTCAAGGCAGCAATTTGGTGGG
                      ____________________________________________________________
consensus             TCCGAAGTGCTGCTTTCAATTTCTCCATCTGTTTTACCTTCAAGGCAGCAATTTGGTGGG
 
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JMFS076F07+                                                             CCACCGGCAG
JMFS071D04+                                                             CCACCGGCAG
JMFS120E05+           TTTGTGTTTCAGAGACCCTTTCAGATGATGAAGCAGAATGAGCGGTTGGCCCACCGGCAG
                      ____________________________________________________________
consensus             TTTGTGTTTCAGAGACCCTTTCAGATGATGAAGCAGAATGAGCGGTTGGCCCACCGGCAG
 
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JMFS076F07+           CTTCAGACGCGGCGGCAGCCTCTAAGGTTTTCCGAGTCTCTTCTAACTTCTCAGCGATCT
JMFS071D04+           CTTCAGACGCGGCGGCAGCCTCTAAGGTTTTCCGAGTCTCTTCTAACTTCTCAGCGATCT
JMFS120E05+           CTTCAGACGCGGCGGCAGCCTCTAAGGTTTTCCGAGTCTCTTCTAACTTCTCAGCGATCT
                      ____________________________________________________________
consensus             CTTCAGACGCGGCGGCAGCCTCTAAGGTTTTCCGAGTCTCTTCTAACTTCTCAGCGATCT
 
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JMFS076F07+           CCGCATCGGTGTATCCCTGCTCGGAGAGCTTCTCCTCGAGGACGAGCAGCTTGAGCTGGA
JMFS071D04+           CCGCATCGGTGTATCCCTGCTCGGAGAGCTTCTCCTCGAGGACGAGCAGCTTGAGCTGGA
JMFS120E05+           CCGCATCGGTGTATCCCTGCTCGGAGAGCTTCTCCTCGAGGACGAGCAGCTTGAGCTGGA
                      ____________________________________________________________
consensus             CCGCATCGGTGTATCCCTGCTCGGAGAGCTTCTCCTCGAGGACGAGCAGCTTGAGCTGGA
 
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JMFS076F07+           TCTGGCGTTTACGGTCGTGCTCCAGAATCTCCTTGTTAGGCTTCCGCGTCATGCCGGCGG
JMFS071D04+           TCTGGCGTTTACGGTCGTGCTCCAGAATCTCCTTGTTAGGCTTCCGCGTCATGCCGGCGG
JMFS120E05+           TCTGGCGTTTACGGTCGTGCTCCAGAATCTCCTTGTTAGGCTTCCGCGTCATGCCGGCGG
                      ____________________________________________________________
consensus             TCTGGCGTTTACGGTCGTGCTCCAGAATCTCCTTGTTAGGCTTCCGCGTCATGCCGGCGG
 
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JMFS076F07+           TTCCCTGATCCGCCCCAAAACCCCTCGCGCCATCCACTAGCACCTTGTTGGTCTTCGACC
JMFS071D04+           TTCCCTGATCCGCCCCAAAACCCCTCGCGCCATCCACTAGCACCTTGTTGGTCTTCGACC
JMFS120E05+           TTCCCTGATCCGCCCCAAAACCCCTCGCGCCATCCACTAGCACCTTGTTGGTCTTCGACC
                      ____________________________________________________________
consensus             TTCCCTGATCCGCCCCAAAACCCCTCGCGCCATCCACTAGCACCTTGTTGGTCTTCGACC
 
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JMFS076F07+           TCACAAAAAATTTGTTTGTCTGCACATAACCGTTCGTCCCGGAGCCCCGGGCCGTCGGTA
JMFS071D04+           TCACAAAAAATTTGTTTGTCTGCACATAACCGTTCGTCCCGGAGCCCCGGGCCGTCGGTA
JMFS120E05+           TCACAAAAAATTTGTTTGTCTGCACATAACCGTTCGTCCCGGAGCCCCGGGCCGTCGGTA
                      ____________________________________________________________
consensus             TCACAAAAAATTTGTTTGTCTGCACATAACCGTTCGTCCCGGAGCCCCGGGCCGTCGGTA
 
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JMFS076F07+           AACCGATTCCGTTATACATCTATGCCGCGACTCGCCGGAAAT                  
JMFS071D04+           AACCGATTCCGTTATACATCTA                                      
JMFS120E05+           AACCGATTCCGTTATACATCTATGCCGCGACTCGCCGGAAATTATGTCTCTCAGATCAAA
                      ____________________________________________________________
consensus             AACCGATTCCGTTATACATCTATGCCGCGACTCGCCGGAAATTATGTCTCTCAGATCAAA