Contig 011830:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS024F10Sequence609011830 (3)ref|XP_009766583.1|7e-35PREDICTED: protein MEI2-like 5 [Nicotiana sylvestris] ref|XP_009766584.1| PREDIC
JMFS119H09Sequence621011830 (3)ref|XP_009766583.1|4e-34PREDICTED: protein MEI2-like 5 [Nicotiana sylvestris] ref|XP_009766584.1| PREDIC
JMSF007E20Sequence446011830 (3)ref|XP_009766583.1|3e-19PREDICTED: protein MEI2-like 5 [Nicotiana sylvestris] ref|XP_009766584.1| PREDIC

Alignment

This contig is upended


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JMFS024F10+                         AGCCCATTATGAGGCGCTCCAACAATATCAGAGACACTTAGCCTTG
JMFS119H09+                                                  TATCAGAGACACTTAGCCTTG
                      ____________________________________________________________
consensus                           AGCCCATTATGAGGCGCTCCAACAATATCAGAGACACTTAGCCTTG
 
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JMFS024F10+           ATATACCAATAGTTAGGCTTTCCTGAGGATCCGATTCTAGTTCCAACCCTCCTCCACTGC
JMFS119H09+           ATATACCAATAGTTAGGCTTTCCTGAGGATCCGATTCTAGTTCCAACCCTCCTCCACTGC
                      ____________________________________________________________
consensus             ATATACCAATAGTTAGGCTTTCCTGAGGATCCGATTCTAGTTCCAACCCTCCTCCACTGC
 
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JMFS024F10+           CGAAAAGATCATAATCTTCCAAGTCATCAGTGCGGTTAGGAAGTCCACCCAGGTCATAGC
JMFS119H09+           CGAAAAGATCATAATCTTCCAAGTCATCAGTGCGGTTAGGAAGTCCACCCAGGTCATAGC
                      ____________________________________________________________
consensus             CGAAAAGATCATAATCTTCCAAGTCATCAGTGCGGTTAGGAAGTCCACCCAGGTCATAGC
 
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JMFS024F10+           CATCCATTACGCCTGATAAAAGTTCATCCTCGTCATCAGGAAGCAAATATTTGATCGTAT
JMSF007E20+                             AAAGTTCATCCTCGTCATCAGGAAGCAAATATTTGATCGTAT
JMFS119H09+           CATCCATTACGCCTGATAAAAGTTCATCCTCGTCATCAGGAAGCAAATATTTGATCGTAT
                      ____________________________________________________________
consensus             CATCCATTACGCCTGATAAAAGTTCATCCTCGTCATCAGGAAGCAAATATTTGATCGTAT
 
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JMFS024F10+           TACGAATAATTTCTTCAAGCAATTCATCACTCTCTACTGCTGGATGGATCTTCTTCAAGC
JMSF007E20+           TACGAATAATTTCTTCAAGCAATTCATCACTCTCTACTGCTGGATGGATCTTCTTCAAGC
JMFS119H09+           TACGAATAATTTCTTCAAGCAATTCATCACTCTCTACTGCTGGATGGATCTTCTTCAAGC
                      ____________________________________________________________
consensus             TACGAATAATTTCTTCAAGCAATTCATCACTCTCTACTGCTGGATGGATCTTCTTCAAGC
 
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JMFS024F10+           TGACTGGTGTGTCATCAATAGATTTCAGATCATGATCCACCTCACTCATGTTCAACTTCT
JMSF007E20+           TGACTGGTGTGTCATCAATAGATTTCAGATCATGATCCACCTCACTCATGTTCAACTTCT
JMFS119H09+           TGACTGGTGTGTCATCAATAGATTTCAGATCATGATCCACCTCACTCATGTTCAACTTCT
                      ____________________________________________________________
consensus             TGACTGGTGTGTCATCAATAGATTTCAGATCATGATCCACCTCACTCATGTTCAACTTCT
 
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JMFS024F10+           CATGGGAGAGAACAGGCAGTGAGCTCGAAAAAAGTGAAGCATCAAAACAATCTTCTGATC
JMSF007E20+           CATGGGAGAGAACAGGCAGTGAGCTCGAAAAAAGTGAAGCATCAAAACAATCTTCTGATC
JMFS119H09+           CATGGGAGAGAACAGGCAGTGAGCTCGAAAAAAGTGAAGCATCAAAACAATCTTCTGATC
                      ____________________________________________________________
consensus             CATGGGAGAGAACAGGCAGTGAGCTCGAAAAAAGTGAAGCATCAAAACAATCTTCTGATC
 
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JMFS024F10+           CAGGAAACACCCTCAATGCGGTGTTTCCCTTGGATATATTTGTCATTGGAATCTCCAAAC
JMSF007E20+           CAGGAAACACCCTCAATGCGGTGTTTCCCTTGGATATATTTGTCATTGGAATCTCCAAAC
JMFS119H09+           CAGGAAACACCCTCAATGCGGTGTTTCCCTTGGATATATTTGTCATTGGAATCTCCAAAC
                      ____________________________________________________________
consensus             CAGGAAACACCCTCAATGCGGTGTTTCCCTTGGATATATTTGTCATTGGAATCTCCAAAC
 
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JMFS024F10+           CTCCT                                                       
JMSF007E20+           CTCCT                                                       
JMFS119H09+           CTCCTCAAAATTAGTGAAAAAGTGGGCAAAAACCCAGAAATCAAGACCTAAGAACTGAAG
                      ____________________________________________________________
consensus             CTCCTCAAAATTAGTGAAAAAGTGGGCAAAAACCCAGAAATCAAGACCTAAGAACTGAAG
 
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JMFS119H09+           AGAGGAGTTGAAAACAGCACATCAAACCACACGAGAACAGTCCAGTTCCAGCTCTGATCA
                      ____________________________________________________________
consensus             AGAGGAGTTGAAAACAGCACATCAAACCACACGAGAACAGTCCAGTTCCAGCTCTGATCA
 
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JMFS119H09+           GAGATGAGAGAGAAATGGAGAGCGAAGGAGAAAGACGTGGTGAGAGAGAAAATGAGCCCC
                      ____________________________________________________________
consensus             GAGATGAGAGAGAAATGGAGAGCGAAGGAGAAAGACGTGGTGAGAGAGAAAATGAGCCCC