Contig 011827:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004K04Sequence524011827 (8)gb|KJB27320.1|1e-88hypothetical protein B456_004G2909001, partial [Gossypium raimondii]640012500 (3)ref|XP_009785704.1|4e-47PREDICTED: beta-adaptin-like protein A [Nicotiana sylvestris]
JMFF029M06Sequence544011827 (8)gb|KJB27320.1|1e-88hypothetical protein B456_004G2909001, partial [Gossypium raimondii]625012500 (3)ref|XP_009785704.1|6e-41PREDICTED: beta-adaptin-like protein A [Nicotiana sylvestris]
JMFS038E02Sequence641011827 (8)gb|KJB27320.1|8e-118hypothetical protein B456_004G2909001, partial [Gossypium raimondii]
JMFS076F03Sequence608011827 (8)gb|KJB27320.1|5e-119hypothetical protein B456_004G2909001, partial [Gossypium raimondii]
JMFS118B05Sequence627011827 (8)gb|KJB27320.1|7e-105hypothetical protein B456_004G2909001, partial [Gossypium raimondii]
JMFS139A11Sequence626011827 (8)gb|KJB27320.1|1e-112hypothetical protein B456_004G2909001, partial [Gossypium raimondii]
JMFS160F06Sequence612011827 (8)gb|KJB27320.1|1e-111hypothetical protein B456_004G2909001, partial [Gossypium raimondii]
JMSF002I18Sequence365011827 (8)ref|XP_011089076.1|5e-42PREDICTED: LOW QUALITY PROTEIN: beta-adaptin-like protein A [Sesamum indicum]476012500 (3)ref|XP_009785704.1|1e-22PREDICTED: beta-adaptin-like protein A [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS076F03+                                            TGGGTCATTAAGCATCAATTGCTTAAG
JMFS038E02+                                                TCATTAAGCATCAATGNCTTAAG
                      ____________________________________________________________
consensus                                              TGGGTCATTAAGCATCAATTGCTTAAG
 
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JMFS076F03+           TAATGTGGGAAAATCGGCATCCACACAAGTTGAAGCAGAGATATGGTACAACTTCAAGAC
JMFS038E02+           TAATGTGGGAAAATCGGCATCCACACAAGTTGAAGCAGAGATATGGTACAACTTCAAGAC
JMFS160F06+                       ATCGGCATCCACACAAGTTGAAGCAGAGATATGGTACAACTTCAAGAC
JMFS139A11+                       ATCGGCATCCACACAAGTTGAAGCAGAGATATGGTACAACTTCAAGAC
JMFS118B05+                                            AGCAGAGATATGGTACAACTTCAAGAC
                      ____________________________________________________________
consensus             TAATGTGGGAAAATCGGCATCCACACAAGTTGAAGCAGAGATATGGTACAACTTCAAGAC
 
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JMFS076F03+           ACCTATTGCAGCAACTGTCCTTACATAACTATTTGAATCCTTCAACCCTGAACCCAATGG
JMFS038E02+           ACCTATTGCAGCAACTGTCCTTACATAACTATTTGAATCCTTCAACCCTGAACCCAATGG
JMFS160F06+           ACCTATTGCAGCAACTGTCCTTACATAACTATTTGAATCCTTCAACCCTGAACCCAATGG
JMFS139A11+           ACCTATTGCAGCAACTGTCCTTACATAACTATTTGAATCCTTCAACCCTGAACCCAATGG
JMFF029M06+                                                             AACCCAATGG
JMFF004K04+                                                             AACCCAATGG
JMFS118B05+           ACCTATTGCAGCAACTGTCCTTACATAACTATNTGAATCCTTCAACCCTGAACCCAATGG
                      ____________________________________________________________
consensus             ACCTATTGCAGCAACTGTCCTTACATAACTATTTGAATCCTTCAACCCTGAACCCAATGG
 
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JMFS076F03+           TCCAACCAAGTACTCCACCAAATTTGCCACTCGAAGTGAACACAAACTCCTGAGAGCCAA
JMFS038E02+           TCCAACCAAGTACTCCACCAAATTTGCCACTCGAAGTGAACACAAACTCCTGAGAGCCAA
JMFS160F06+           TCCAACCAAGTACTCCACCAAATTTGCCACTCGAAGTGAACACAAACTCCTGAGAGCCAA
JMFS139A11+           TCCAACCAAGTACTCCACCAAATTTGCCACTCGAAGTGAACACAAACTCCTGAGAGCCAA
JMFF029M06+           TCCAACCAAGTACTCCACCAAATTTGCCACTCGAAGTGAACACAAACTCCTGAGAGCCAA
JMFF004K04+           TCCAACCAAGTACTCCACCAAATTTGCCACTCGAAGTGAACACAAACTCCTGAGAGCCAA
JMFS118B05+           TCCAACCAAGTACTCCACCAAATTTGCCACTCGAAGTGAACACAAACTCCTGAGAGCCAA
                      ____________________________________________________________
consensus             TCCAACCAAGTACTCCACCAAATTTGCCACTCGAAGTGAACACAAACTCCTGAGAGCCAA
 
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JMFS076F03+           ACCCCTAATCATTGGGTCCTCATCCTTACAGTCCCTCTGGAGAAAATTTATCGTCAAAAG
JMFS038E02+           ACCCCTAATCATTGGGTCCTCATCCTTACAGTCCCTCTGGAGAAAATTTATCGTCAAAAG
JMFS160F06+           ACCCCTAATCATTGGGTCCTCATCCTTACAGTCCCTCTGGAGAAAATTTATCGTCAAAAG
JMFS139A11+           ACCCCTAATCATTGGGTCCTCATCCTTACAGTCCCTCTGGAGAAAATTTATCGTCAAAAG
JMFF029M06+           ACCCCTAATCATTGGGTCCTCATCCTTACAGTCCCTCTGGAGAAAATTTATCGTCAAAAG
JMFF004K04+           ACCCCTAATCATTGGGTCCTCATCCTTACAGTCCCTCTGGAGAAAATTTATCGTCAAAAG
JMFS118B05+           ACCCCTAATCATTGGGTCCTCATCCTTACAGTCCCTCTGGAGAAAATTTATCGTCAAAAG
                      ____________________________________________________________
consensus             ACCCCTAATCATTGGGTCCTCATCCTTACAGTCCCTCTGGAGAAAATTTATCGTCAAAAG
 
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JMFS076F03+           TGCAAGATCAGGATTATTCTTTGCATAGTTCCCAACATACAGGTAACACATCTTTTTTAG
JMFS038E02+           TGCAAGATCAGGATTATTCTTTGCATAGTTCCCAACATACAGGTAACACATCTTTTTTAG
JMFS160F06+           TGCAAGATCAGGATTATTCTTTGCATAGTTCCCAACATACAGGTAACACATCTTTTTTAG
JMFS139A11+           TGCAAGATCAGGATTATTCTTTGCATAGTTCCCAACATACAGGTAACACATCTTTTTTAG
JMSF002I18+                                                       AACACATCTTTTTTAG
JMFF029M06+           TGCAAGATCAGGATTATTCTTTGCATAGTTCCCAACATACAGGTAACACATCTTTTTTAG
JMFF004K04+           TGCAAGATCAGGATTATTCTTTGCATAGTTCCCAACATACAGGTAACACATCTTTTTTAG
JMFS118B05+           TGCAAGATCAGGATTATTCTTTGCATAGTTCCCAACATACAGGTAACACATCTTTTTTAG
                      ____________________________________________________________
consensus             TGCAAGATCAGGATTATTCTTTGCATAGTTCCCAACATACAGGTAACACATCTTTTTTAG
 
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JMFS076F03+           CACAATGTCCGAGGTCGCTGAGCACATAACCATTTCACTAAAAACCGATGACACATCAAT
JMFS038E02+           CACAATGTCCGAGGTCGCTGAGCACATAACCATTTCACTAAAAACCGATGACACATCAAT
JMFS160F06+           CACAATGTCCGAGGTCGCTGAGCACATAACCATTTCACTAAAAACCGATGACACATCAAT
JMFS139A11+           CACAATGTCCGAGGTCGCTGAGCACATAACCATTTCACTAAAAACCGATGACACATCAAT
JMSF002I18+           CACAATGTCCGAGGTNGCTGAGCACATAACCATTTCACTAAAAACCGATGACACATCAAT
JMFF029M06+           CACAATGTCCGAGGTCGCTGAGCACATAACCATTTCACTAAAAACCGATGACACATCAAT
JMFF004K04+           CACAATGTCCGAGGTCGCTGAGCACATAACCATTTCACTAAAAACCGATGACACATCAAT
JMFS118B05+           CACAATGTCCGAGGTCGCTGAGCACATAACCATTTCACTAAAAACCGATGACACATCAAT
                      ____________________________________________________________
consensus             CACAATGTCCGAGGTCGCTGAGCACATAACCATTTCACTAAAAACCGATGACACATCAAT
 
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JMFS076F03+           CCCAATCGTCATGTATGAGATAACCTTCTTGAATAGCTCTCTCTTTGAATCATCAGCCCC
JMFS038E02+           CCCAATCGTCATGTATGAGATAACCTTCTTGAATAGCTCTCTCTTTGAATCATCAGCCCC
JMFS160F06+           CCCAATCGTCATGTATGAGATAACCTTCTTGAATAGCTCTCTCTTTGAATCATCAGCCCC
JMFS139A11+           CCCAATCGTCATGTATGAGATAACCTTCTTGAATAGCTCTCTCTTTGAATCATCAGCCCC
JMSF002I18+           CCCNATCGTCATGTATGAGATAACCTTCTTGAATAGCTCTCTCTTTGAATCATCAGCCCC
JMFF029M06+           CCCAATCGTCATGTATGAGATAACCTTCTTGAATAGCTCTCTCTTTGAATCATCAGCCCC
JMFF004K04+           CCCAATCGTCATGTATGAGATAACCTTCTTGAATAGCTCTCTCTTTGAATCATCAGCCCC
JMFS118B05+           CCCAATCGTCATGTATGAGATAACCTTCTTGAATAGCTCTCTCTTTGAATCATCAGCCCC
                      ____________________________________________________________
consensus             CCCAATCGTCATGTATGAGATAACCTTCTTGAATAGCTCTCTCTTTGAATCATCAGCCCC
 
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JMFS076F03+           AGGCGCTCGGCTCCCTGCCAGCTGACGAAGCTGCATTTTCAAATCTGAGACCTCCCCTTT
JMFS038E02+           AGGCGCTCGGCTCCCTGCCAGCTGACGAAGCTGCATTTTCAAATCTGAGACCTCCCCTTT
JMFS160F06+           AGGCGCTCGGCTCCCTGCCAGCTGACGAAGCTGCATTTTCAAATCTGAGACCTCCCCTTT
JMFS139A11+           AGGCGCTCGGCTCCCTGCCAGCTGACGAAGCTGCATTTTCAAATCTGAGACCTCCCCTTT
JMSF002I18+           AGGCGCTCGGCTCCNTGCCAGCTGACGAAGCTGCATTTTCAAATNTGAGACCTCCCCTTT
JMFF029M06+           AGGCGCTCGGCTCCCTGCCAGCTGACGAAGCTGCATTTTCAAATCTGAGACCTCCCCTTT
JMFF004K04+           AGGCGCTCGGCTCCCTGCCAGCTGACGAAGCTGCATTTTCAAATCTGAGACCTCCCCTTT
JMFS118B05+           AGGCGCTCGGCTCCCTGCCAGCTGACGAAGCTGCATTTTCAAATCTGAGACCTCCCCTTT
                      ____________________________________________________________
consensus             AGGCGCTCGGCTCCCTGCCAGCTGACGAAGCTGCATTTTCAAATCTGAGACCTCCCCTTT
 
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JMFS076F03+           CCCGGAAGGTTGAGAAGGAGAAGGCGATCGCTGAGCATTAGCTGGAGGAGCCATGTT-AA
JMFS038E02+           CCCGGAAGGTTGAGAAGGAGAAGGCGATCGCTGAGCATTAGCTGGAGGAGCCATGTTGAA
JMFS160F06+           CCCGGAAGGTTGAGAAGGAGAAGGCGATCGCTGAGCATTAGCTGGAGGAGCCATGTTGAA
JMFS139A11+           CCCGGAAGGTTGAGAAGGAGAAGGCGATCGCTGAGCATTAGCTGGAGGAGCCATGTTGAA
JMSF002I18+           CCCGGAAGGTTGAGAAGGAGAAGGCGATCGCTGAGCATTAGCTGGAGGAGCCATGNTGAA
JMFF029M06+           CCCGGAAGGTTGAGAAGGAGAAGGCGATCGCTGAGCATTAGCTGGAGGAGCCATGTTGAA
JMFF004K04+           CCCGGAAGGTTGAGAAGGAGAAGGCGATCGCTGAGCATTAGCTGGAGGAGCCATGTTGAA
JMFS118B05+           CCCGGAAGGTTGAGAAGGAGAAGGCGATCGCTGAGCATTAGCTGGAGGAGCCATGTTGAA
                      ____________________________________________________________
consensus             CCCGGAAGGTTGAGAAGGAGAAGGCGATCGCTGAGCATTAGCTGGAGGAGCCATGTTGAA
 
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JMFS076F03+           GTCTCAACAGTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC                  
JMFS038E02+           GTCTCAACAGTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCTCTGGCGATTA
JMFS160F06+           GTCTCAACAGTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCTCTGGCGATTA
JMFS139A11+           GTCTCAACAGTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCTCTGGCGATTA
JMSF002I18+           GTCTCAACAGTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCTCTGGCGATTA
JMFF029M06+           GTCTCAACAGTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCTCTGGCGATTA
JMFF004K04+           GTCTCAACAGTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCTCTGGCGATTA
JMFS118B05+           GTCTCAACAGTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCTCTGGCGATTA
                      ____________________________________________________________
consensus             GTCTCAACAGTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCTCTGGCGATTA
 
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JMFS038E02+           TGATTGGAATGGATCTCT                                          
JMFS160F06+           TGATTGGAATGGATCTCTGTCGTG                                    
JMFS139A11+           TGATTGGAATGGATCTCTGTCGTGCTGCCAAATC                          
JMSF002I18+           TGATTGGAATGGATCTCNGTCGTGCTGCCAAATCGACAACAAACGA              
JMFF029M06+           TGATTGGAATGGATCTCTGTCGTGCTGCCAAATCGACAACAAACGA              
JMFF004K04+           TGATTGGAATGGATCTCTGTCGTGCTGCCAAATC                          
JMFS118B05+           TGATTGGAATGGATCTCTGTCGTGCTGCCAAATCGACAACAAACGATTGAATCTGAAACC
                      ____________________________________________________________
consensus             TGATTGGAATGGATCTCTGTCGTGCTGCCAAATCGACAACAAACGATTGAATCTGAAACC