Contig 011825:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015B10Sequence416011825 (3)gb|AFW80115.1|1e-59hypothetical protein ZEAMMB73_313798 [Zea mays]
JMFN005E17Sequence479011825 (3)gb|ACG30677.1|7e-50histone H4 [Zea mays]
JMFS115D01Sequence491011825 (3)gb|ACG30677.1|3e-50histone H4 [Zea mays]

Alignment

This contig is upended


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JMFN005E17+                                                                    AAG
rJMCP015B10+                                                           AATCAAAAAAG
JMFS115D01+                                                            AATCAAAAAAG
                      ____________________________________________________________
consensus                                                              AATCAAAAAAG
 
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JMFN005E17+           ATTCAATCACTATTTCCATTAAGATTAAACCATAGATACACAGTGAGAATCACATCGAAG
rJMCP015B10+          ATTCAATCACTATTTCCATTAAGATTAAACCATAGATACACAGTGAGAATCACATCGAAG
JMFS115D01+           ATTCAATCACTATTTCCATTAAGATTAAACCATAGATACACAGTGAGAATCACATCGAAG
                      ____________________________________________________________
consensus             ATTCAATCACTATTTCCATTAAGATTAAACCATAGATACACAGTGAGAATCACATCGAAG
 
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JMFN005E17+           CTTAATACTTTAATAGTCAATACCAATACATAGAGCTAAACCAGGACAGAGCTCAACCGC
rJMCP015B10+          CTTAATACTTTAATAGTCAATACCAATACATAGAGCTAAACCAGGACAGAGCTCAACCGC
JMFS115D01+           CTTAATACTTTAATAGTCAATACCAATACATAGAGCTAAACCAGGACAGAGCTCAACCGC
                      ____________________________________________________________
consensus             CTTAATACTTTAATAGTCAATACCAATACATAGAGCTAAACCAGGACAGAGCTCAACCGC
 
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JMFN005E17+           CGAAGCCATAGAGGGTCCTTCCTTGTCTCTTGAGAGCATAGACCACATCCATGGCGGTCA
rJMCP015B10+          CGAAGCCATAGAGGGTCCTTCCTTGTCTCTTGAGAGCATAGACCACATCCATGGCGGTCA
JMFS115D01+           CGAAGCCATAGAGGGTCCTTCCTTGTCTCTTGAGAGCATAGACCACATCCATGGCGGTCA
                      ____________________________________________________________
consensus             CGAAGCCATAGAGGGTCCTTCCTTGTCTCTTGAGAGCATAGACCACATCCATGGCGGTCA
 
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JMFN005E17+           CAGTCTTCCTCCTAGCGTGCTCCGTGTACGTCACCGCATCGCGGATAACATTTTCGAGGA
rJMCP015B10+          CAGTCTTCCTCCTAGCGTGCTCCGTGTACGTCACCGCATCGCGGATAACATTTTCGAGGA
JMFS115D01+           CAGTCTTCCTCCTAGCGTGCTCCGTGTACGTCACCGCATCGCGGATAACATTTTCGAGGA
                      ____________________________________________________________
consensus             CAGTCTTCCTCCTAGCGTGCTCCGTGTACGTCACCGCATCGCGGATAACATTTTCGAGGA
 
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JMFN005E17+           AGATCTTGAGAACGCCTCTGGTCTCTTCGTAGATCAGGCCGCTGATTCTCTTCACACCGC
rJMCP015B10+          AGATCTTGAGAACGCCTCTGGTCTCTTCGTAGATCAGGCCGCTGATTCTCTTCACACCGC
JMFS115D01+           AGATCTTGAGAACGCCTCTGGTCTCTTCGTAGATCAGGCCGCTGATTCTCTTCACACCGC
                      ____________________________________________________________
consensus             AGATCTTGAGAACGCCTCTGGTCTCTTCGTAGATCAGGCCGCTGATTCTCTTCACACCGC
 
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JMFN005E17+           CCCTTCTGGCCAGCCTACGGATAGCGGGCTTGGTGATGCCCTGGATGTTGTCCCTGAGCA
rJMCP015B10+          CCCTTCTGGCCAGCCTACGGATAGCGGGCTTGGTGATGCCCTGGATGTTGTCCCTGAGCA
JMFS115D01+           CCCTTCTGGCCAGCCTACGGATAGCGGGCTTGGTGATGCCCTGGATGTTGTCCCTGAGCA
                      ____________________________________________________________
consensus             CCCTTCTGGCCAGCCTACGGATAGCGGGCTTGGTGATGCCCTGGATGTTGTCCCTGAGCA
 
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JMFN005E17+           CCTTACGGTGGCGCTTTGCTCCGCCCTTTCCCAGCCCCTTGCCTCCCTTTCCGCGGCCGG
rJMCP015B10+          CCTTACGGTGGCGCTTTGCTCCGCCCTTTCCCAGCCCCTTGCCTC               
JMFS115D01+           CCTTACGGTGGCGCTTTGCTCCGCCCTTTCCCAGCCCCTTGCCTCCCTTTCCGCGGCCGG
                      ____________________________________________________________
consensus             CCTTACGGTGGCGCTTTGCTCCGCCCTTTCCCAGCCCCTTGCCTCCCTTTCCGCGGCCGG
 
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JMFN005E17+           ACA-TTTTTTTTCACGCGGAGAAGTGATTGAATTCGACTGTGA                 
JMFS115D01+           ACATTTTTTTTTCACGCGGAGAAGTGATTGAATTCGACTGTGAAGTGTGAGATTGAAAGT
                      ____________________________________________________________
consensus             ACATTTTTTTTTCACGCGGAGAAGTGATTGAATTCGACTGTGAAGTGTGAGATTGAAAGT