Contig 011817:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS100B12Sequence641011817 (2)ref|XP_010052845.1|2e-85PREDICTED: soluble starch synthase 3, chloroplastic/amyloplastic isoform X3 [Eu
JMSF015H20Sequence224011817 (2)ref|NP_001274802.1|2e-30soluble starch synthase 3, chloroplastic/amyloplastic [Solanum tuberosum] gb|AC272008484 (2)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS100B12+                              TCCAATTATTATGTCCTCCATGAATCCATATTTCATTAGCA
                      ____________________________________________________________
consensus                                TCCAATTATTATGTCCTCCATGAATCCATATTTCATTAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS100B12+           CGGGAAAGTGGACCTGAACTATTGTTATAGTACAATCTAATCTTGTCCTCACTTTTGAAT
                      ____________________________________________________________
consensus             CGGGAAAGTGGACCTGAACTATTGTTATAGTACAATCTAATCTTGTCCTCACTTTTGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS100B12+           TCTTTGGGCTCTATATACCAGTTGTCAGAAACAGACTTTGAAGCCTTATCGATTGCTGCT
                      ____________________________________________________________
consensus             TCTTTGGGCTCTATATACCAGTTGTCAGAAACAGACTTTGAAGCCTTATCGATTGCTGCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS100B12+           TGCAAAATTTTCCGTGTCTTTGCAACCTCTTCTCTTGCCTGTGCTCTATCGACTTCACTT
                      ____________________________________________________________
consensus             TGCAAAATTTTCCGTGTCTTTGCAACCTCTTCTCTTGCCTGTGCTCTATCGACTTCACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015H20+                                               GCTTCTCTTTCTCTTTGAGCTTGT
JMFS100B12+           GCAGCTTTCTCTGCTTCTATTCTTCTCTTTTCTTCTGCTTCTCTTTCTCTTTGAGCTTGT
                      ____________________________________________________________
consensus             GCAGCTTTCTCTGCTTCTATTCTTCTCTTTTCTTCTGCTTCTCTTTCTCTTTGAGCTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015H20+           TCCTTAGCAATTCTTTCCAGCTCCCTCTGTTTCTCCTCAAGCAAGAAATTTTCAAAGTCC
JMFS100B12+           TCCTTAGCAATTCTTTCCAGCTCCCTCTGTTTCTCCTCAAGCAAGAAATTTTCAAAGTCC
                      ____________________________________________________________
consensus             TCCTTAGCAATTCTTTCCAGCTCCCTCTGTTTCTCCTCAAGCAAGAAATTTTCAAAGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015H20+           AAAGCATCCATACCATCTTTTACAGTTATAGAGAAGTCTTTCATATTATTGTTATCATAG
JMFS100B12+           AAAGCATCCATACCATCTTTTACAGTTATAGAGAAGTCTTTCATATTATTGTTATCATAG
                      ____________________________________________________________
consensus             AAAGCATCCATACCATCTTTTACAGTTATAGAGAAGTCTTTCATATTATTGTTATCATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015H20+           ACATCTTTTCCATTGAAAAACACAAAATCAATGTTGTATGCTTCCTTGGGAACATGAAGC
JMFS100B12+           ACATCTTTTCCATTGAAAAACACAAAATCAATGTTGTATGCTTCCTTGGGAACATGAAGC
                      ____________________________________________________________
consensus             ACATCTTTTCCATTGAAAAACACAAAATCAATGTTGTATGCTTCCTTGGGAACATGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF015H20+           CTGCAAGACCACCAATCCCC                                        
JMFS100B12+           CTGCAAGACCACCAATCCCCATTTAAATTAGTCTTGCTAAGGTTCATGGTAAAAGATCTC
                      ____________________________________________________________
consensus             CTGCAAGACCACCAATCCCCATTTAAATTAGTCTTGCTAAGGTTCATGGTAAAAGATCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS100B12+           CAACGCCAGTCATTAAATCCTCCCATGATCAATACATCGGGCTCGTTCAACAAAGTGGAG
                      ____________________________________________________________
consensus             CAACGCCAGTCATTAAATCCTCCCATGATCAATACATCGGGCTCGTTCAACAAAGTGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS100B12+           AGACTTCTGTTAAGAAATATTTCTACATCTTCATCGGGTTTTACCTCCTCGGGATAATAG
                      ____________________________________________________________
consensus             AGACTTCTGTTAAGAAATATTTCTACATCTTCATCGGGTTTTACCTCCTCGGGATAATAG