Contig 011812:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020F24Sequence229011812 (4)299005568 (3)ref|XP_009766354.1|7e-11PREDICTED: target of Myb protein 1-like [Nicotiana sylvestris]
JMFF033M17Sequence229011812 (4)298005568 (3)ref|XP_009766354.1|6e-10PREDICTED: target of Myb protein 1-like [Nicotiana sylvestris]
JMFF050N14Sequence625011812 (4)ref|XP_006366880.1|1e-43PREDICTED: TOM1-like protein 2-like [Solanum tuberosum]602005568 (3)ref|XP_010256972.1|2e-07PREDICTED: target of Myb protein 1-like isoform X1 [Nelumbo nucifera]
JMFS097B03Sequence597011812 (4)emb|CDP06410.1|6e-37unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF050N14+                   ATCAGTACTAGGATTTTATCTCTCACGTGTGTATCCATCGTCTTCTTTACAA
                      ____________________________________________________________
consensus                     ATCAGTACTAGGATTTTATCTCTCACGTGTGTATCCATCGTCTTCTTTACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF050N14+           TTTTGACCATCTCTGTTAATATATTTCTTTCAGAAATTTGAACGTGCACAACATCAGAAC
JMFS097B03+              TGACCATCTCTGTTAATATATTTCTTTCAGAAATTTGAACGTGCACAACATCAGAAC
                      ____________________________________________________________
consensus             TTTTGACCATCTCTGTTAATATATTTCTTTCAGAAATTTGAACGTGCACAACATCAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF050N14+           AGTTTTTCACCATGGTCTCCACAAGCGTTAAAGAAAGTAGCTGCACTTTAGGATTCTTGT
JMFS097B03+           AGTTTTTCACCATGGTCTCCACAAGCGTTAAAGAAAGTAGCTGCACTTTAGGATTCTTGT
                      ____________________________________________________________
consensus             AGTTTTTCACCATGGTCTCCACAAGCGTTAAAGAAAGTAGCTGCACTTTAGGATTCTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF050N14+           TCTGCAACCTTTTCTTCAAAGATTTGAGAACATCTTTCGCCACCCAACGACTGGTATTGA
JMFS097B03+           TCTGCAACCTTTTCTTCAAAGATTTGAGAACATCTTTCGCCACCCAACGACTGGTATTGA
                      ____________________________________________________________
consensus             TCTGCAACCTTTTCTTCAAAGATTTGAGAACATCTTTCGCCACCCAACGACTGGTATTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF050N14+           TGATGTCGCAGATATCAATGTTCATAGGCCAGTCAGGGCCTGTCAAGAACTCACTCGTGG
JMFS097B03+           TGATGTCGCAGATATCAATGTTCATAGGCCAGTCAGGGCCTGTCAAGAACTCACTCGTGG
                      ____________________________________________________________
consensus             TGATGTCGCAGATATCAATGTTCATAGGCCAGTCAGGGCCTGTCAAGAACTCACTCGTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF050N14+           CCTTCTCCACTCGAACCACCACCGAAGATGATGTCGAATACCATGAAGAAGCAGGCGCCA
JMFS097B03+           CCTTCTCCACTCGAACCACCACCGAAGATGATGTCGAATACCATGAAGAAGCAGGCGCCA
                      ____________________________________________________________
consensus             CCTTCTCCACTCGAACCACCACCGAAGATGATGTCGAATACCATGAAGAAGCAGGCGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M17+                                                           CAGATTCTGTGT
JMFF020F24+                                                           CAGATTCTGTGT
JMFF050N14+           TAGCCAGTGAAGATATCATCTTTTTCTTCXXXXXXXXXXXXXXXXXXXCAGATTCTGTGT
JMFS097B03+           TAGCCAGTGAAGATATCATCTTTTTCTTCTTTTTTTTTTTTTTTTTTTCAGATTCTGTGT
                      ____________________________________________________________
consensus             TAGCCAGTGAAGATATCATCTTTTTCTTCTTTTTTTTTTTTTTTTTTTCAGATTCTGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M17+           TTCCTGAGAAAAATCACTGTTCTTGCGTGGAATGAGAAAGAAAAGCAGAAACTAATCTCT
JMFF020F24+           TTCCTGAGAAAAATCACTGTTCTTGCGTGGAATGAGAAAGAAAAGCAGAAACTAATCTCT
JMFF050N14+           TTCCTGAGAAAAATCACTGTTCTTGCGTGGAATGAGAAAGAAAAGCAGAAACTAATCTCT
JMFS097B03+           TTCCTGAGAAAAATCACTGTTCTTGCGTGGAATGAGAAAGAAAAGCAGAAACTAATCTCT
                      ____________________________________________________________
consensus             TTCCTGAGAAAAATCACTGTTCTTGCGTGGAATGAGAAAGAAAAGCAGAAACTAATCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M17+           GGGTCTTGTGATTCTGAGTTTCACGGGAAAACACAAGGAAAAAAAAAGGCTCTTTGTTCC
JMFF020F24+           GGGTCTTGTGATTCTGAGTTTCACGGGAAAACACAAGGAAAAAAAAAGGCTCTTTGTTCC
JMFF050N14+           GGGTCTTGTGATTCTGAGTTTCACGGGAAAACACAAGGAAAAAAAAAGGCTCTTTGTTCC
JMFS097B03+           GGGTCTTGTGATTCTGAGTTTCACGGGAAAACACAAGGAAAAAAAAAGGCTCTTTGTTCC
                      ____________________________________________________________
consensus             GGGTCTTGTGATTCTGAGTTTCACGGGAAAACACAAGGAAAAAAAAAGGCTCTTTGTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M17+           CGAGAAACGCTACGATAGTTTCTCGTTTGGGCCCTTCTGTTACTCTTGCGCTTGGCTCTA
JMFF020F24+           CGAGAAACGCTACGATAGTTTCTCGTTTGGGCCCTTCTGTTACTCTTGCGCTTGGCTCTA
JMFF050N14+           CGAGAAACGCTACGATAGTTTCTCGTTTGGGCCCTTCTGTTACTCTTGCGCTTGGCTCTA
JMFS097B03+           CGAGAAACGCTACGATAGTTTCTCGTTTGGGCCCTTCTGTTACTCTTGCGCTTGGCTCTA
                      ____________________________________________________________
consensus             CGAGAAACGCTACGATAGTTTCTCGTTTGGGCCCTTCTGTTACTCTTGCGCTTGGCTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF033M17+           AGAGCTTTCTCGGTCTCTTCTC                                      
JMFF020F24+           AGAGCTTTCTCGGTCTCTTCTC                                      
JMFF050N14+           AGAGCTTTCTCGGTCTCTTCTC                                      
JMFS097B03+           AGAGCTTTCTCGGTCTCTTCTCTCGCGTTTCATTTCTTTGCTTTTTCCAAATCTCGTTGT
                      ____________________________________________________________
consensus             AGAGCTTTCTCGGTCTCTTCTCTCGCGTTTCATTTCTTTGCTTTTTCCAAATCTCGTTGT