Contig 011806:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF001B01-                                                         TTTCTGATAGTCT
                      ____________________________________________________________
consensus                                                            TTTCTGATAGTCT
 
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rJMFF001B01-          ATCTGAAACATTAATCTTCATTGCTATATAAATTTTCAACAGATATCATGGATAACCTTG
rJMFF013M15-                    TTAATCTTCATTGCTATATAAATTTTCAACAGATATCATGGATAACCTTG
                      ____________________________________________________________
consensus             ATCTGAAACATTAATCTTCATTGCTATATAAATTTTCAACAGATATCATGGATAACCTTG
 
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rJMFF001B01-          ACGGCATCCAAAGAAGAGCCTCCCTTAGATTGTGTTTCTGCATCAAAAGAAGAGCCTCCC
rJMFF013M15-          ACGGCATCCAAAGAAGAGCCTCCCTTAGATTGTGTTTCTGCATCAAAAGAAGAGCCTCCC
                      ____________________________________________________________
consensus             ACGGCATCCAAAGAAGAGCCTCCCTTAGATTGTGTTTCTGCATCAAAAGAAGAGCCTCCC
 
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rJMFF001B01-          TTAGAGCTTCTGCCTCCATTCGCAGTGTGGACTCCTCTCGAAGGAACACTTTTAGCAAGA
rJMFF013M15-          TTAGAGCTTCTGCCTCCATTCGCAGTGTGGACTCCTCTCGAAGGAACACTTTTAGCAAGA
                      ____________________________________________________________
consensus             TTAGAGCTTCTGCCTCCATTCGCAGTGTGGACTCCTCTCGAAGGAACACTTTTAGCAAGA
 
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rJMFF001B01-          TCAATTGCGACATCAACTTTAATCTAACGCAGCCTTGCCTCTGTTGCTCATACGTTGCTC
rJMFF013M15-          TCAATTGCGACATCAACTTTAATCTAACGCAGCCTTGCCTCTGTTGCTCATACGTTGCTC
                      ____________________________________________________________
consensus             TCAATTGCGACATCAACTTTAATCTAACGCAGCCTTGCCTCTGTTGCTCATACGTTGCTC
 
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rJMFF001B01-          AAAAGTGTAAATAAGAATTCTTGAGCATTGTTCACCAATATCTGTACTAGCAAGATAGCT
rJMFF013M15-          AAAAGTGTAAATAAGAATTCTTGAGCATTGTTCACCAATATCTGTACTAGCAAGATAGCT
                      ____________________________________________________________
consensus             AAAAGTGTAAATAAGAATTCTTGAGCATTGTTCACCAATATCTGTACTAGCAAGATAGCT
 
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rJMFF001B01-          CATTTCTTTCTCAAGCTTTTCCAATTCTTCAACTTTGCTGAATTGGGATACAAGTCCAGC
rJMFF013M15-          CATTTCTTTCTCAAGCTTTTCCAATTCTTCAACTTTGCTGAATTGGGATACAAGTCCAGC
                      ____________________________________________________________
consensus             CATTTCTTTCTCAAGCTTTTCCAATTCTTCAACTTTGCTGAATTGGGATACAAGTCCAGC
 
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rJMFF001B01-          AGCTACAACAATTGCCAGGGGAAGCCCCCCACACTTGCCAACAATATTCCTTCCAATTGT
rJMFF013M15-          AGCTACAACAATTGCCAGGGGAAGCCCCCCACACTTGCCAACAATATTCCTTCCAATTGT
                      ____________________________________________________________
consensus             AGCTACAACAATTGCCAGGGGAAGCCCCCCACACTTGCCAACAATATTCCTTCCAATTGT
 
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rJMFF001B01-          GTTGAACTTAGAGTGCAAGGGCTGTTTCAAGAAAATATGACTGCAAAATAGATCCCAACT
rJMFF013M15-          GTTGAACTTAGAGTGCAAGGGCTGTTTCAAGAAAATATGACTGCAAAATAGATCCCAACT
                      ____________________________________________________________
consensus             GTTGAACTTAGAGTGCAAGGGCTGTTTCAAGAAAATATGACTGCAAAATAGATCCCAACT
 
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rJMFF001B01-          TTTATCAGAATTGAGAAAATGCAAGTCATGAAGAAGATTGCTGGCACCTGATGTAGTGTA
rJMFF013M15-          TTTATCAGAATTGAGAAAATGCAAGTCATGAAGAAGATTGCTGGCACCTGATGTAGTGTA
JMSF046K06+              ATCAGAATTGAGAAAATGCAAGTCATGAAGAAGATTGCTGGCACCTGATGTAGTGTA
                      ____________________________________________________________
consensus             TTTATCAGAATTGAGAAAATGCAAGTCATGAAGAAGATTGCTGGCACCTGATGTAGTGTA
 
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rJMFF001B01-          GTCTGCAATCTCTCTTAGCCGAGAGGTCACCAATACTACACTTCCATAACTTTTAGGAAA
rJMFF013M15-          GTCTGCAATCTCTCTTAGCCGAGAGGTCACCAATACTACACTTCCATAACTTTTAGGAAA
JMSF046K06+           GTCTGCAATCTCTCTTAGCCGAGAGGTCACCAATACTACACTTCCATAACTTTTAGGAAA
                      ____________________________________________________________
consensus             GTCTGCAATCTCTCTTAGCCGAGAGGTCACCAATACTACACTTCCATAACTTTTAGGAAA
 
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rJMFF001B01-          ACATCTGGTGAGATAATCCCAGACATTGGTTTCCCATACGTCATCCACCACAATCAGATA
rJMFF013M15-          ACATCTGGTGAGATAATCCCAGACATTGGTTTCCCATACGTCATCCACCACAATCAGATA
JMSF046K06+           ACATCTGGTGAGATAATCCCAGACATTGGTTTCCCATACGTCATCCACCACAATCAGATA
                      ____________________________________________________________
consensus             ACATCTGGTGAGATAATCCCAGACATTGGTTTCCCATACGTCATCCACCACAATCAGATA
 
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rJMFF001B01-          CCTCATACCC                                                  
rJMFF013M15-          CCTCATACCCATCAAACGCTGTCGTAGC                                
JMSF046K06+           CCTCATACCCATCAAACGCTGTCGTAGCTTGTGTGCTAGTTCATCTAGTGTGCTTCCCTC
                      ____________________________________________________________
consensus             CCTCATACCCATCAAACGCTGTCGTAGCTTGTGTGCTAGTTCATCTAGTGTGCTTCCCTC
 
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JMSF046K06+           GGTATTCATTCCTCTCTGAATGGACCAAAGAAGGCTGCAGAGAATTTGTCTCATGTTAAC
                      ____________________________________________________________
consensus             GGTATTCATTCCTCTCTGAATGGACCAAAGAAGGCTGCAGAGAATTTGTCTCATGTTAAC
 
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JMSF046K06+           TTCTTGAGAGACAGTAGTCCATGCACGAAGGTCAAAGTAGGATAGCACTGATGGATCTTC
                      ____________________________________________________________
consensus             TTCTTGAGAGACAGTAGTCCATGCACGAAGGTCAAAGTAGGATAGCACTGATGGATCTTC
 
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JMSF046K06+           GTAAACGCTTTTGGCTAAAGTAGTTTTACCGATCCCGCCCATCCCAAGAATGGAAATGAC
JMFF013M15+                                                            ATGGAAATGAC
JMFS089C07+                                                 CCATCCCAAGAATGGAAATGAC
                      ____________________________________________________________
consensus             GTAAACGCTTTTGGCTAAAGTAGTTTTACCGATCCCGCCCATCCCAAGAATGGAAATGAC
 
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JMSF046K06+           TTTCCCTTCTTTAGATGGTTGATGAATGAGCTGATTCTTTATTGTTTTTAATTCTCTTCT
JMFF013M15+           TTTCCCTTCTTTAGATGGTTGATGAATGAGCTGATTCTTTATTGTTTTTAATTCTCTTCT
JMFS089C07+           TTTCCCTTCTTTAGATGGTTGATGAATGAGCTGATTCTTTATTGTTTTTAATTCTCTTCT
                      ____________________________________________________________
consensus             TTTCCCTTCTTTAGATGGTTGATGAATGAGCTGATTCTTTATTGTTTTTAATTCTCTTCT
 
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JMSF046K06+           ACGCCCAATCATTCGGTCCTCAATCTTTGAGATCCACTCATGTGAAGATAACGGAAGGGC
JMFF013M15+           ACGCCCAATCATTCGGTCCTCAATCTTTGAGATCCACTCATGTGAAGATAACGGAAGGGC
JMFS089C07+           ACGCCCAATCATTCGGTCCTCAATCTTTGAGATCCACTCATGTGAAGATAACGGAAGGGC
                      ____________________________________________________________
consensus             ACGCCCAATCATTCGGTCCTCAATCTTTGAGATCCACTCATGTGAAGATAACGGAAGGGC
 
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JMSF046K06+           TTGTACCTTTGTCAAATCTTGGACAGCAGAATCATTGTATTCTCTTTTAATTCCGTTAAC
JMFF013M15+           TTGTACCTTTGTCAAATCTTGGACAGCAGAATCATTGTATTCTCTTTTAATTCCGTTAAC
JMFS089C07+           TTGTACCTTTGTCAAATCTTGGACAGCAGAATCATTGTATTCTCTTTTAATTCCGTTAAC
                      ____________________________________________________________
consensus             TTGTACCTTTGTCAAATCTTGGACAGCAGAATCATTGTATTCTCTTTTAATTCCGTTAAC
 
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JMSF046K06+           GAAGTTTTGAGTTTTTTTCAGCTACTTGTCGTAGGTTCTGAAAAAGTATCATCTCTGCAT
JMFF013M15+           GAAGTTTTGAG-TTTTTTCAGCTACTTGTCGTAGGTTCTGAAAAAGTATCATCTCTGCAT
JMFS089C07+           GAAGTTTTGAG-TTTTTTCAGCTACTTGTCGTAGGTTCTGAAAAAGTATCATCTCTGCAT
                      ____________________________________________________________
consensus             GAAGTTTTGAG-TTTTTTCAGCTACTTGTCGTAGGTTCTGAAAAAGTATCATCTCTGCAT
 
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JMSF046K06+           CTTCACCTAGTACTTGT                                           
JMFF013M15+           CTTCACCTAGTACTTGTTGTAGGTTCTGAAAGAGTGTCATCTCCTTATCTGCCGCCTCCA
JMFS089C07+           CTTCACCTAGTACTTGTTGTAGGTTCTGAAAGAGTGTCATCTCCTTATCTGCCGCCTCCA
                      ____________________________________________________________
consensus             CTTCACCTAGTACTTGTTGTAGGTTCTGAAAGAGTGTCATCTCCTTATCTGCCGCCTCCA
 
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JMFF013M15+           TATATATCTTTGCCAGATTTGATTCAACTTCATCTTCTGCTAAAAAGGCGAAGTCTCTGA
JMFS089C07+           TATATATCTTTGCCAGATTTGATTCAACTTCATCTTCTGCTAAAAAGGCGAAGTCTCTGA
                      ____________________________________________________________
consensus             TATATATCTTTGCCAGATTTGATTCAACTTCATCTTCTGCTAAAAAGGCGAAGTCTCTGA
 
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JMFF013M15+           TTTTGGCTTCCAAATCTTTGATTGCAGCATCATCATTTCCGGGTTTTTTCTGGAATTCCT
JMFS089C07+           TTTTGGCTTCCAAATCTTTGATTGCAGCATCATCATTTCCGGGTTTTTTCTGGAATTCCT
                      ____________________________________________________________
consensus             TTTTGGCTTCCAAATCTTTGATTGCAGCATCATCATTTCCGGGTTTTTTCTGGAATTCCT
 
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JMFF013M15+           CAAGAAAGGTGAGCAAGAAACCAAGATTATGGTGGAGAGAACTAACCAAATGTGCTGTAT
JMFS089C07+           CAAGAAAGGTGAGCAAGAAACCAAGATTATGGTGGAGAGAACTAACCAAATGTGCTGTAT
                      ____________________________________________________________
consensus             CAAGAAAGGTGAGCAAGAAACCAAGATTATGGTGGAGAGAACTAACCAAATGTGCTGTAT
 
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JMFF013M15+           CTTCAGCAAGAATCACAGGTGCTCTGCAGGGTTGTAAGAACTCAAAGTGGATTGTATTCA
JMFS089C07+           CTTCAGCAAGAATCACAGGTGCTCTGCAGGGTTGTAAGAACTCAAAGTGGATTGTATTCA
                      ____________________________________________________________
consensus             CTTCAGCAAGAATCACAGGTGCTCTGCAGGGTTGTAAGAACTCAAAGTGGATTGTATTCA
 
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JMFF013M15+           TCAGAGAAGTTAGAGGAACACAAGCCATTTCTCTCTCTCTCTGTATTTGCTTCAGAC   
JMFS089C07+           TCAGAGAAGTTAGAGGAACACAAGCCATTTCTCTCTCTCTCTGTATTTGCTTCAGACGGA
                      ____________________________________________________________
consensus             TCAGAGAAGTTAGAGGAACACAAGCCATTTCTCTCTCTCTCTGTATTTGCTTCAGACGGA