Contig 011804:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF042I16-                                                                  ATTG
                      ____________________________________________________________
consensus                                                                     ATTG
 
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rJMSF042I16-          AACCCATTGTAAAAATTCTTGTTACAACTGGGAGAGTGAAAAGAAGCACCAATTTTCTGA
                      ____________________________________________________________
consensus             AACCCATTGTAAAAATTCTTGTTACAACTGGGAGAGTGAAAAGAAGCACCAATTTTCTGA
 
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JMFN014D19+                CTTATAAAGTTTAGACTTACATATATATATTCAGAATGAAATAAGCATATAGTGG
rJMSF042I16-          AATTTCTTATAAAGTTTAGACTTACATATATATATTCAGAATGAAATAAGCATATAGTGG
                      ____________________________________________________________
consensus             AATTTCTTATAAAGTTTAGACTTACATATATATATTCAGAATGAAATAAGCATATAGTGG
 
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JMFN014D19+           TGGGAATACCAGATACTGTTACACTGATGCTATTGCAGCATCCAAAAAGTGTGCCTTTGA
rJMSF042I16-          TGGGAATACCAGATACTGTTACACTGATGCTATTGCAGCATCCAAAGAGTGTGCCTTTGA
                      ____________________________________________________________
consensus             TGGGAATACCAGATACTGTTACACTGATGCTATTGCAGCATCCAAAGAGTGTGCCTTTGA
 
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JMFN014D19+           TTGAATCCAAGACACTAAATCTTCTTGAGTCGCAACGAAAAATCCAGCTTTCTTTTCACT
rJMSF042I16-          TTGAATCCAAGACACTAAATCTTCTTGAGTCGCAACGAAAAATCCAGCTTTCTCTTCACT
                      ____________________________________________________________
consensus             TTGAATCCAAGACACTAAATCTTCTTGAGTCGCAACGAAAAATCCAGCTTTCTTTTCACT
 
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JMFN014D19+           CTCCTTGAAAGGGGCTTCGAACTTTTCCAGGTGCGAAGCGAATGAATTAGCCAAGCCTTG
rJMSF042I16-          CTCCTTGAAAGGGGCTTCGAACTTTTCCAGGTGCGAAGCGAATGAATTAGCCAAGCCTTG
                      ____________________________________________________________
consensus             CTCCTTGAAAGGGGCTTCGAACTTTTCCAGGTGCGAAGCGAATGAATTAGCCAAGCCTTG
 
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JMFN014D19+           GGAGAACCTGTGGGTTCCTGCGCCAGTGTAAGCTGTGAAGAGTTGAGGCAATGGCTCCTG
rJMSF042I16-          GGAGAACCTGTGGGTTCCTGCGCCAGTGTAAGCTGTGAAGAGTTGAGGCAATGGCTCCTG
                      ____________________________________________________________
consensus             GGAGAACCTGTGGGTTCCTGCGCCAGTGTAAGCTGTGAAGAGTTGAGGCAATGGCTCCTG
 
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JMFN014D19+           GCGCTGCACGATTTTGGCGAGAGTCGCCATCCATTCCTCGAATGCAGTTCGAGCGGCACC
rJMSF042I16-          GCGCTGCACGATTTTGGCGAGAGTCGCCATCCATTCCTCGAATGCAGTTCGAGCGGCACC
                      ____________________________________________________________
consensus             GCGCTGCACGATTTTGGCGAGAGTCGCCATCCATTCCTCGAATGCAGTTCGAGCGGCACC
 
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JMFN014D19+           CACCGAGAGTGACCGGACGTTCAAACGCCACTCCTGGGACGTCTTGCTATGTAAACCAGG
rJMSF042I16-          CACCGAGAGTGACCGGACGTTCAAACGCCACTCCTGGGACGTCTTGCTATGTAAACCAGG
                      ____________________________________________________________
consensus             CACCGAGAGTGACCGGACGTTCAAACGCCACTCCTGGGACGTCTTGCTATGTAAACCAGG
 
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JMFN014D19+           GTACAGTCCATACACGGTCCCGATATAGAGCAGCTCGTGAGCTCGGTTCTGCAGGTTTCT
rJMSF042I16-          GTACAGTCCATACACGGTCCCGATATAGAGCAGCTCGTGAGCTCGGTTCTGCAGGTTTCT
                      ____________________________________________________________
consensus             GTACAGTCCATACACGGTCCCGATATAGAGCAGCTCGTGAGCTCGGTTCTGCAGGTTTCT
 
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JMFN014D19+           GTTCCTACATATATCGATCAGG                                      
rJMSF042I16-          GTTCCTACATATATCGATCAGGCAGTTGCAGAAAGGTCTTCGGGATTCCGGAGAGGTATT
                      ____________________________________________________________
consensus             GTTCCTACATATATCGATCAGGCAGTTGCAGAAAGGTCTTCGGGATTCCGGAGAGGTATT
 
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rJMSF042I16-          GCTGAGAATCACTCTGATCTCTTCTTTCACAGCCTCGAAGCTTGTGCTCTCTTCACCCAG
JMFS087A11+                 AATCACTCTGATCTCTTCTTTCACAGCCTCGAAGCTTGTGCTCTCTTCACCCAG
                      ____________________________________________________________
consensus             GCTGAGAATCACTCTGATCTCTTCTTTCACAGCCTCGAAGCTTGTGCTCTCTTCACCCAG
 
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rJMSF042I16-          CATCCTCACAATGGCAACCAATCTCGGGTTCGCTCTCTCTAGACAACCAACAACCTTCTC
JMFS087A11+           CATCCTCACAATGGCAACCAATCTCGGGTTCGCTCTCTCTAGACAACCAACAACCTTCTC
                      ____________________________________________________________
consensus             CATCCTCACAATGGCAACCAATCTCGGGTTCGCTCTCTCTAGACAACCAACAACCTTCTC
 
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rJMSF042I16-          GGCATCCTTGCCTTCGCAATACGACAC                                 
JMFS087A11+           GGCATCCTTGCCTTCGCAATACGACACAACGGATAGCAGACACCCACAGAGCCTGTCGTC
                      ____________________________________________________________
consensus             GGCATCCTTGCCTTCGCAATACGACACAACGGATAGCAGACACCCACAGAGCCTGTCGTC
 
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JMFS087A11+           GGGTTTGATCCCTCTCTCCATCGAGGCTTCAAACACCGTAACTAAATCATCAATTCTATT
                      ____________________________________________________________
consensus             GGGTTTGATCCCTCTCTCCATCGAGGCTTCAAACACCGTAACTAAATCATCAATTCTATT
 
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JMFS087A11+           TCCTTTACCCAAGCATTGGATCAAACAAGTGCACCCCATCACATTAAGCTCAACCCCTTC
                      ____________________________________________________________
consensus             TCCTTTACCCAAGCATTGGATCAAACAAGTGCACCCCATCACATTAAGCTCAACCCCTTC
 
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JMFS087A11+           CTCCGACATTTCCTTGTACAAACTCACAGCCTTCTCCACACCTCCCCCACTCGCATATAT
                      ____________________________________________________________
consensus             CTCCGACATTTCCTTGTACAAACTCACAGCCTTCTCCACACCTCCCCCACTCGCATATAT
 
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JMFS087A11+           ATTTATCATGGCCGTATAGCTCCAACTATCCGGTTTACAACTCCTCGACTCCTTCATATC
                      ____________________________________________________________
consensus             ATTTATCATGGCCGTATAGCTCCAACTATCCGGTTTACAACTCCTCGACTCCTTCATATC
 
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JMFS087A11+           ACCAAACAACCTCTCGGCCTCCTCCTCCAACCCGATATCAGCACACATACTCAACAATGT
                      ____________________________________________________________
consensus             ACCAAACAACCTCTCGGCCTCCTCCTCCAACCCGATATCAGCACACATACTCAACAATGT
 
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JMFS087A11+           ATTATACAAATAGAAGTCCATAGGCCACCCCTTCGATTTCATTCTCTCCCAAAGCTCCAA
                      ____________________________________________________________
consensus             ATTATACAAATAGAAGTCCATAGGCCACCCCTTCGATTTCATTCTCTCCCAAAGCTCCAA
 
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JMFS087A11+           CGCATCTCTAGCCCACCTCGCCTTCCCATAAATCTTGATCAAGCACGTTAGCGTTCTCTC
                      ____________________________________________________________
consensus             CGCATCTCTAGCCCACCTCGCCTTCCCATAAATCTTGATCAAGCACGTTAGCGTTCTCTC