Contig 011803:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS016D05Sequence571011803 (2)gb|AAV88067.1|9e-39NBS-LRR protein [Ipomoea batatas]
JMFS086E07Sequence613011803 (2)gb|AAV88068.1|3e-35NBS-LRR protein [Ipomoea batatas]

Alignment

This contig is upended


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JMFS016D05+                                             ATCTAGCAAAGTCATGTTATGGATAT
                      ____________________________________________________________
consensus                                               ATCTAGCAAAGTCATGTTATGGATAT
 
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JMFS016D05+           AGTTGTAGGAATAGTTATATTGGATGAAGTCCCTTATAGAAGTGGTTAGTAATATGCAAC
                      ____________________________________________________________
consensus             AGTTGTAGGAATAGTTATATTGGATGAAGTCCCTTATAGAAGTGGTTAGTAATATGCAAC
 
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JMFS016D05+           TTCCAACTTCAACTTCAGGAATGCACTCTCTGATGTCAATATAAGCTTGATTGCTCAAAG
                      ____________________________________________________________
consensus             TTCCAACTTCAACTTCAGGAATGCACTCTCTGATGTCAATATAAGCTTGATTGCTCAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016D05+           TGTTGTCCAAAACAATTAAATACCTCCTACCACGTAAGCATTCGCGTACCTGCATTTCTA
                      ____________________________________________________________
consensus             TGTTGTCCAAAACAATTAAATACCTCCTACCACGTAAGCATTCGCGTACCTGCATTTCTA
 
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JMFS016D05+           GTTCATCTGGAGTGCTTCCCTTTTCCATTTCAATTGGCCCCGCTGGTGTAATTGACTGAA
                      ____________________________________________________________
consensus             GTTCATCTGGAGTGCTTCCCTTTTCCATTTCAATTGGCCCCGCTGGTGTAATTGACTGAA
 
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JMFS016D05+           GAAGGTCACTTAGCATTTTGCTCTTATTGTAGTGTTGAGGAGGAGGAATAGTAACCCAAG
JMFS086E07+                                                     GAGGTATAGTAACCCAAG
                      ____________________________________________________________
consensus             GAAGGTCACTTAGCATTTTGCTCTTATTGTAGTGTTGAGGAGGAGGTATAGTAACCCAAG
 
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JMFS016D05+           CTCTTACATCGAAATGCGATGCAACTGATGGATCTTCATACACATTTCTTGCTACAGTAG
JMFS086E07+           CTCTTACATCGAAATGGGATGCAACTGATGGATCTTCATACACATTTCTTGCTACAGTAG
                      ____________________________________________________________
consensus             CTCTTACATCGAAATGGGATGCAACTGATGGATCTTCATACACATTTCTTGCTACAGTAG
 
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JMFS016D05+           TCTTTCCAATACCTACCATTCCAACAATTGAAATTATGTTTAGTTCAGAAGGGGAA---A
JMFS086E07+           TCTTTCCAATACCCACCATGCCAACAACTGAGATTATCTTTACTCCAAAACGGGAAGACA
                      ____________________________________________________________
consensus             TCTTTCCAATACCTACCATTCCAACAATTGAGATTATGTTTAGTTCAGAAGGGGAAGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS016D05+           AGAGTTGGTCCTTTATCACTCTACAATCATGGCGACGACCAACCATTCTGCCCTCAGGCT
JMFS086E07+           AGAGTTGGTCCTTTATCACTGTACAATCATGTTGACGGCCAACCATTCTGCCCTCAGGCT
                      ____________________________________________________________
consensus             AGAGTTGGTCCTTTATCACTGTACAATCATGTTGACGGCCAACCATTCTGCCCTCAGGCT
 
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JMFS016D05+           TTAGAAAGCCATGTGAGGA                                         
JMFS086E07+           TTAGAAAGCCATGCGAGGAGGAGGATCCATCACCATCAGACTCAACAACATTGGCAGACT
                      ____________________________________________________________
consensus             TTAGAAAGCCATGTGAGGAGGAGGATCCATCACCATCAGACTCAACAACATTGGCAGACT
 
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JMFS086E07+           TGGAAGCATCAGCATCGGCATGTTTTAATGGTTGAGTTTCATTTGCCTCATCATCAACTT
                      ____________________________________________________________
consensus             TGGAAGCATCAGCATCGGCATGTTTTAATGGTTGAGTTTCATTTGCCTCATCATCAACTT
 
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JMFS086E07+           CATTGCTTCTGCTACCTCTGACTATCTTCAAATACTCTGCTAATAGCTGCTGTTCTTCTT
                      ____________________________________________________________
consensus             CATTGCTTCTGCTACCTCTGACTATCTTCAAATACTCTGCTAATAGCTGCTGTTCTTCTT
 
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JMFS086E07+           TGTCGATAATCTCTGCTGCAATTTCTACAACTTCTTGCAAGGTTTGACGGAGTTCCTGGG
                      ____________________________________________________________
consensus             TGTCGATAATCTCTGCTGCAATTTCTACAACTTCTTGCAAGGTTTGACGGAGTTCCTGGG
 
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JMFS086E07+           AAGCTTCTTCTTCGTGCTCAGTGTCTTCGGATAGAAGAAAGTTGCTTAGCTGTATTTCGA
                      ____________________________________________________________
consensus             AAGCTTCTTCTTCGTGCTCAGTGTCTTCGGATAGAAGAAAGTTGCTTAGCTGTATTTCGA
 
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JMFS086E07+           TGTCATTTTCGGCTTTGAGTGCGAAGTCTCTGATTTTTATTGCAGCACCACAATTGGATT
                      ____________________________________________________________
consensus             TGTCATTTTCGGCTTTGAGTGCGAAGTCTCTGATTTTTATTGCAGCACCACAATTGGATT