Contig 011801:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031E21Sequence671006887 (6)721011801 (2)ref|XP_009796977.1|308PREDICTED: gamma-soluble NSF attachment protein [Nicotiana sylvestris]
JMFS080A04Sequence640011801 (2)ref|XP_006353034.1|1e-93PREDICTED: gamma-soluble NSF attachment protein-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF031E21-                                                           TACTGGCTTAT
                      ____________________________________________________________
consensus                                                              TACTGGCTTAT
 
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rJMFF031E21-          ATTACAGTGCTTGATCATTTCATATCTATCACGATATTCAAGCAACCAAAATCATAAAAC
                      ____________________________________________________________
consensus             ATTACAGTGCTTGATCATTTCATATCTATCACGATATTCAAGCAACCAAAATCATAAAAC
 
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rJMFF031E21-          AGCAAGTCACAAGGCTTTATCCAAGCAATCCAGAAAATGGTACACAAATGACAGATGTAT
                      ____________________________________________________________
consensus             AGCAAGTCACAAGGCTTTATCCAAGCAATCCAGAAAATGGTACACAAATGACAGATGTAT
 
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rJMFF031E21-          TCATTGAAATGAAGACTAGGTAAGATCATCCTCATCAAGCTGTTCTTCATTGTCCCTTGT
                      ____________________________________________________________
consensus             TCATTGAAATGAAGACTAGGTAAGATCATCCTCATCAAGCTGTTCTTCATTGTCCCTTGT
 
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rJMFF031E21-          CGTGCCACTTCTGAATGCACTCACATCCCCTGTTGGTAGTTTCCTTGCAAGCCTAACAAT
                      ____________________________________________________________
consensus             CGTGCCACTTCTGAATGCACTCACATCCCCTGTTGGTAGTTTCCTTGCAAGCCTAACAAT
 
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rJMFF031E21-          CGTGTGATCAAGATTTGTAACTATACTTGACTGACCAACGCGCTTGATTTCTTCTTCATC
                      ____________________________________________________________
consensus             CGTGTGATCAAGATTTGTAACTATACTTGACTGACCAACGCGCTTGATTTCTTCTTCATC
 
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rJMFF031E21-          ACCTTCTCTGTATGCAGAGAGAAACTTGCTAGCACAGCGACTTTGATCGCTATTCAAAAA
                      ____________________________________________________________
consensus             ACCTTCTCTGTATGCAGAGAGAAACTTGCTAGCACAGCGACTTTGATCGCTATTCAAAAA
 
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rJMFF031E21-          GGTTTCAACCTGACAACAATCATTATAGCACTTTTCAGCTTCCTTGAAGTCATGAGTATA
                      ____________________________________________________________
consensus             GGTTTCAACCTGACAACAATCATTATAGCACTTTTCAGCTTCCTTGAAGTCATGAGTATA
 
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rJMFF031E21-          TAGGTAGACAATGATTGCACTGAGGTATGCCTTGCATTGGCTATGAGTTGCATTACACTT
JMFS080A04+                               TGAGGTATGCCTTGCATTGGCTATGAGTTGCATTACACTT
                      ____________________________________________________________
consensus             TAGGTAGACAATGATTGCACTGAGGTATGCCTTGCATTGGCTATGAGTTGCATTACACTT
 
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rJMFF031E21-          ATCAGCTGCCAAGGCCAATCTCAAAAGAATAGTTGCAGCATCTCCATACTTCTCAAGCTT
JMFS080A04+           ATCAGCTGCCAAGGCCAATCTCAAAAGAATAGTTGCAGCATCTCCATACTTCTCAAGCTT
                      ____________________________________________________________
consensus             ATCAGCTGCCAAGGCCAATCTCAAAAGAATAGTTGCAGCATCTCCATACTTCTCAAGCTT
 
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rJMFF031E21-          TACATAAACCCTTGACGCATCACGATAGAGATCAAATGCCATTTGGTCCTTGCCATCTTC
JMFS080A04+           TACATAAACCCTTGACGCATCACGATAGAGATCAAATGCCATTTGGTCCTTGCCATCTTA
                      ____________________________________________________________
consensus             TACATAAACCCTTGACGCATCACGATAGAGATCAAATGCCATTTGGTCCTTGCCATCTTC
 
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rJMFF031E21-          TTCCAAAGCAGCGCAGGCTTCAGTGTAGAGTTGAACAGCTTCATCCGGGGCTGCATCTTC
JMFS080A04+           TTCCAAAGCAGCGCAGGCTTCAGTGTAGAGTTGAACAGCTTCATCCGGGGCTGCATCTTC
                      ____________________________________________________________
consensus             TTCCAAAGCAGCGCAGGCTTCAGTGTAGAGTTGAACAGCTTCATCCGGGGCTGCATCTTC
 
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rJMFF031E21-          CAAGGCTCGGGCACCTTTAGCAAGAGCATCAGATGCAGGTTGTGC               
JMFS080A04+           CAAGGCTCGGGCACCTTTAGCAAGAGCATCAGATGCAGGTTGTGCCCTTCCACACTCACT
                      ____________________________________________________________
consensus             CAAGGCTCGGGCACCTTTAGCAAGAGCATCAGATGCAGGTTGTGCCCTTCCACACTCACT
 
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JMFS080A04+           GTACAATTCATATGCCCGTCTATAAAAGTCAGCAACTTCACGCCAATTGCCTAACTCCTT
                      ____________________________________________________________
consensus             GTACAATTCATATGCCCGTCTATAAAAGTCAGCAACTTCACGCCAATTGCCTAACTCCTT
 
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JMFS080A04+           TGCCATGGCGGCAGCAGATTCCATAAGTTTGGCTGCATCCCAAGGCGAGGACAGCATCTC
                      ____________________________________________________________
consensus             TGCCATGGCGGCAGCAGATTCCATAAGTTTGGCTGCATCCCAAGGCGAGGACAGCATCTC
 
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JMFS080A04+           TTGTCCTTTTGAAGCTTTCTCAAATGCTGTTTTTGCTTGCTCATACTTTTTTGCGAGCCT
                      ____________________________________________________________
consensus             TTGTCCTTTTGAAGCTTTCTCAAATGCTGTTTTTGCTTGCTCATACTTTTTTGCGAGCCT
 
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JMFS080A04+           AAATCCATTAGCTGCCTGCTCATACAAACTGGTAGCATTCTTCCAATCAGCAGTCCACCT
                      ____________________________________________________________
consensus             AAATCCATTAGCTGCCTGCTCATACAAACTGGTAGCATTCTTCCAATCAGCAGTCCACCT
 
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JMFS080A04+           TGTAAAACTCAGTTTTGTTAGTTTATCCGCTTTGGAGAGCAACTTTGCGTGATCGGAAGA
                      ____________________________________________________________
consensus             TGTAAAACTCAGTTTTGTTAGTTTATCCGCTTTGGAGAGCAACTTTGCGTGATCGGAAGA
 
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JMFS080A04+           AGCCATGGGTGTGATGAGAGTTGTGGGGGTTTCCAACCCGAAGGGCAGATCCGATTTGAA
                      ____________________________________________________________
consensus             AGCCATGGGTGTGATGAGAGTTGTGGGGGTTTCCAACCCGAAGGGCAGATCCGATTTGAA