Contig 011799:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS076G04Sequence662011799 (2)ref|XP_003635406.1|2e-59PREDICTED: putative nuclear matrix constituent protein 1-like protein isoform X
JMSF029D06Sequence668011799 (2)ref|XP_011100100.1|1e-60PREDICTED: putative nuclear matrix constituent protein 1-like protein, partial 741014001 (2)ref|XP_009776304.1|2e-05PREDICTED: putative nuclear matrix constituent protein 1-like protein [Nicotian

Alignment

This contig is upended


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JMSF029D06+                        CCTCCATCATCCTTCGAGCTTCAGCCAATTTAGTTTCTGCTGCAACT
JMFS076G04+                                                                     CT
                      ____________________________________________________________
consensus                          CCTCCATCATCCTTCGAGCTTCAGCCAATTTAGTTTCTGCTGCAACT
 
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JMSF029D06+           TTTGCCTCGGCAGAATCTGTACGCATCTCATGCAACGCCTTCTCAATATTTGCAACACAT
JMFS076G04+           TTTGCCTCGGCAGAATCTGTACGCATCTCATGCAACGCCTTCTCAATATTTGCAACACAT
                      ____________________________________________________________
consensus             TTTGCCTCGGCAGAATCTGTACGCATCTCATGCAACGCCTTCTCAATATTTGCAACACAT
 
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JMSF029D06+           TCTTTCTCAATTCCAAGAGCCTTCTTCAGATTATCTTCTCGTTTCTTGGCTTCTGTCATC
JMFS076G04+           TCTTTCTCAATTCCAAGAGCCTTCTTCAGATTATCTTCTCGTTTCTTGGCTTCTGTCATC
                      ____________________________________________________________
consensus             TCTTTCTCAATTCCAAGAGCCTTCTTCAGATTATCTTCTCGTTTCTTGGCTTCTGTCATC
 
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JMSF029D06+           TCCGAAATTCGTGCAGCCTGTTCTCTCTTATACAGCAATTGAGCTGAGTCAGCTGTGGCT
JMFS076G04+           TCCGAAATTCGTGCAGCCTGTTCTCTCTTATACAGCAATTGAGCTGAGTCAGCTGTGGCT
                      ____________________________________________________________
consensus             TCCGAAATTCGTGCAGCCTGTTCTCTCTTATACAGCAATTGAGCTGAGTCAGCTGTGGCT
 
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JMSF029D06+           GTCAGTTGCTCATATTTGGATTCCCATTGTTTCCTTTCCAAGATGAGCAAGCCCATATGA
JMFS076G04+           GTCAGTTGCTCATATTTGGATTCCCATTGTTTCCTTTCCAAGATGAGCAAGCCCATATGA
                      ____________________________________________________________
consensus             GTCAGTTGCTCATATTTGGATTCCCATTGTTTCCTTTCCAAGATGAGCAAGCCCATATGA
 
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JMSF029D06+           T---------------GCTCAGATTCTAATTTGGCAATATAGGCAATGAGAGCAGCCTTA
JMFS076G04+           TGCTGATGGTCATATAGCTCAGATTCTAATTTGGCAATATAGGCAATGAGAGCAGCCTTA
                      ____________________________________________________________
consensus             TGCTGATGGTCATATAGCTCAGATTCTAATTTGGCAATATAGGCAATGAGAGCAGCCTTA
 
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JMSF029D06+           TCGCGGCGTTTGATGGACTCCTCATCCAACCCGGCGTCGCGGAGCCGCTTCCAAATCGAT
JMFS076G04+           TCGCGGCGTTTGATGGACTCCTCATCCAACCCGGCGTCGCGGAGCCGCTTCCAAATCGAT
                      ____________________________________________________________
consensus             TCGCGGCGTTTGATGGACTCCTCATCCAACCCGGCGTCGCGGAGCCGCTTCCAAATCGAT
 
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JMSF029D06+           TCATCAGTCAACGGCGTAGTCAAAACCCTAGCTCCGGAAGACGCACCGGGCGCAGGGGTG
JMFS076G04+           TCATCAGTCAACGGCGTAGTCAAAACCCTAGCTCCGGAAGACGCACCGGGCGCAGGGGTG
                      ____________________________________________________________
consensus             TCATCAGTCAACGGCGTAGTCAAAACCCTAGCTCCGGAAGACGCACCGGGCGCAGGGGTG
 
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JMSF029D06+           ACAGGTGTCCCCGGCGTCAAGGCCAATCTGTGGCTCCGCGGCGGCTGCGGACTCGCCATT
JMFS076G04+           ACAGGTGTCCCCGGCGTCAAGGCCAATCTGTGGCTCCGCGGCGGCTGCGGACTCGCCATT
                      ____________________________________________________________
consensus             ACAGGTGTCCCCGGCGTCAAGGCCAATCTGTGGCTCCGCGGCGGCTGCGGACTCGCCATT
 
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JMSF029D06+           CCCACCCAATCTCTTCCGATCAACCAAACAAGCTCGGCTCGGCTCCTCCCAAATCCTCAA
JMFS076G04+           CCCACCCAATCTCTTCCGATCAACCAAACAAGCTCGGCTCGGCTCCTCCCAAATCCTCAA
                      ____________________________________________________________
consensus             CCCACCCAATCTCTTCCGATCAACCAAACAAGCTCGGCTCGGCTCCTCCCAAATCCTCAA
 
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JMSF029D06+           CGATTTCCCAGAACCCAGAAGAACTCTCCTCCGATTTTCTCAATGCAACGCTTTGTGGTT
JMFS076G04+           CGATTTCCCAGAACCCAGAAGAACTCTCCTCCGATTTTCTCAATGCAACGCTTTGTGGTT
                      ____________________________________________________________
consensus             CGATTTCCCAGAACCCAGAAGAACTCTCCTCCGATTTTCTCAATGCAACGCTTTGTGGTT
 
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JMSF029D06+           GTGGACTCCACCTCCTTTTTCTCTCTCCTCCTTT                          
JMFS076G04+           GTGGACTCCACCTCCTTTTTCTCTCTCCTCCTTTTTTTCTCTCACTAAAAATATATTCCT
                      ____________________________________________________________
consensus             GTGGACTCCACCTCCTTTTTCTCTCTCCTCCTTTTTTTCTCTCACTAAAAATATATTCCT