Contig 011797:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017I03Sequence502011797 (7)ref|XP_009624550.1|5e-44PREDICTED: copper-transporting ATPase PAA2, chloroplastic [Nicotiana tomentosif718011033 (3)ref|XP_006353854.1|2e-58PREDICTED: copper-transporting ATPase PAA2, chloroplastic-like isoform X1 [Sola
JMFS022F10Sequence592011797 (7)ref|XP_009624550.1|5e-55PREDICTED: copper-transporting ATPase PAA2, chloroplastic [Nicotiana tomentosif
JMFS061B10Sequence626011797 (7)ref|XP_009767519.1|3e-66PREDICTED: copper-transporting ATPase PAA2, chloroplastic [Nicotiana sylvestris
JMFS073G07Sequence622011797 (7)ref|XP_009624550.1|1e-51PREDICTED: copper-transporting ATPase PAA2, chloroplastic [Nicotiana tomentosif
JMFS075C04Sequence641011797 (7)ref|XP_009624550.1|9e-47PREDICTED: copper-transporting ATPase PAA2, chloroplastic [Nicotiana tomentosif
JMFS161A05Sequence519011797 (7)ref|XP_011081596.1|1e-49PREDICTED: copper-transporting ATPase PAA2, chloroplastic [Sesamum indicum]
JMSF007D19Sequence337011797 (7)ref|XP_009624550.1|5e-30PREDICTED: copper-transporting ATPase PAA2, chloroplastic [Nicotiana tomentosif818011033 (3)ref|XP_006353855.1|4e-117PREDICTED: copper-transporting ATPase PAA2, chloroplastic-like isoform X2 [Sola

Alignment

This contig is upended


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JMFS161A05+                                                               GTTCATGT
                      ____________________________________________________________
consensus                                                                 GTTCATGT
 
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JMFS161A05+           CACTAGAAGCTTTCAGCCTGGCCCTTTCCTCCAGAGAACGGCCCAACAGAACAAAGCCAA
                      ____________________________________________________________
consensus             CACTAGAAGCTTTCAGCCTGGCCCTTTCCTCCAGAGAACGGCCCAACAGAACAAAGCCAA
 
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JMFS161A05+           GAAGCATGACCTGCATGCGGTTCATCAAAAAATGATGCATCCCATTGAAGTTCAGGGTTA
                      ____________________________________________________________
consensus             GAAGCATGACCTGCATGCGGTTCATCAAAAAATGATGCATCCCATTGAAGTTCAGGGTTA
 
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JMFS161A05+           AGAAGTGACACAGCACTAATAGCAAATGCAGCAAGTGAACCAAAGCCAACTAGAGAGTTC
                      ____________________________________________________________
consensus             AGAAGTGACACAGCACTAATAGCAAATGCAGCAAGTGAACCAAAGCCAACTAGAGAGTTC
 
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JMFS161A05+           ATATTTGGCGATCTCTTCATGAATGCTTGTATACCATCAAAAAGCAGGTCTGAACTTGTG
                      ____________________________________________________________
consensus             ATATTTGGCGATCTCTTCATGAATGCTTGTATACCATCAAAAAGCAGGTCTGAACTTGTG
 
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JMFS161A05+           GAAGGTATTACTGACCTCTTCCAGGCCCCAATAAAGCTCCCAAAGCCAATCCACCTTTCA
                      ____________________________________________________________
consensus             GAAGGTATTACTGACCTCTTCCAGGCCCCAATAAAGCTCCCAAAGCCAATCCACCTTTCA
 
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JMFS161A05+           AATACGAATTGTGCAGTAACTCCATAATGGATCCATGACCAACATGAATGCCGAGAGAGT
JMFS061B10+                                  ATAATGGATCCATGACCAACATGAATGCCGAGAGAGT
JMFS075C04+                                  ATAATGGATGCATGCCCAACATGAATCACGAGAGACT
                      ____________________________________________________________
consensus             AATACGAATTGTGCAGTAACTCCATAATGGATCCATGACCAACATGAATGCCGAGAGAGT
 
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JMFS161A05+           GAAGTATATGGGAGCCGTGAGCTCCACAACACAGAGCCACCAGCGTCCAAGCAAACGCCA
JMFS061B10+           GAAGTATATGGGAGCCGTGAGCTCCACAACACAGAGCCACCAGCGTCCAAGCAAACGCCA
JMFS075C04+           GAAGTATATGGGAGCCGTGAGCTCCACAACTCAGAGCCTCCAGCGTCCAAGCATACGCCA
JMFS022F10+                                     CAACACAGAGCCACCAGCGTCCAAGCAAACGCCA
                      ____________________________________________________________
consensus             GAAGTATATGGGAGCCGTGAGCTCCACAACACAGAGCCACCAGCGTCCAAGCAAACGCCA
 
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JMFS161A05+           CCCGGTTCCGACTCTCCACAAGCAAACCCTCCTTCTTCGCCACCATTTCCTTCCATTTCT
JMFS061B10+           CCCGGTTCCGACTCTCCACAAGCAAACCCTCCTTCTTCGCCACCATTTCCTTCCATTTCT
JMFS075C04+           GCCGGTTCGGACTCTCCACAAGCAAACCCTCATTCTTCGCCACCATTTCCTTCCATTTCT
JMFS022F10+           CCCGGTTCCGACTCTCCACAAGCAAACCCTCCTTCTTCGCCACCATTTCCTTCCATTTCT
JMFS073G07+                                               TCGCCACCATTTCCTTCCATTTCT
                      ____________________________________________________________
consensus             CCCGGTTCCGACTCTCCACAAGCAAACCCTCCTTCTTCGCCACCATTTCCTTCCATTTCT
 
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JMFS161A05+           TCACCTTATCTTCAATCCCAAGCCCCGACGC                             
JMFS061B10+           TCACCTTATCTTCAATCCCAAGCCCCGACGCTCTCCGCTTCGTCGGAAAACCACAATCCG
JMFS075C04+           TCACAGTATCTTCAATCCCGAGCCCGGACGCTCTCCGCTTCGTCGGAAAACCACAATCTG
JMFS022F10+           TCACCTTATCTTCAATCCCAAGCCCCGACGCTCTCCGCTTCGTCGGAAAACCACAATCCG
JMFF017I03+                      TCAATCCCAAGCCCCGACGCTCTCCGCTTCGTCGGAAAACCACAATCCG
JMFS073G07+           TCACCTTATCTTCAATCCCAAGCCCCGACGCTCTCCGCTTCGTCGGAAAACCACAATCCG
                      ____________________________________________________________
consensus             TCACCTTATCTTCAATCCCAAGCCCCGACGCTCTCCGCTTCGTCGGAAAACCACAATCCG
 
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JMFS061B10+           TCAGCCTCTTAGCTAGCTCTTCAGCAGCGCTTCCCTCCTCCACAGCGGCGGCGGCGGTCG
JMFS075C04+           TCAGCCTCTTAGCTAGCTCTTCAGCAGCGCTTCCCTCCTCCACAGCGGCGGCGGCGGTGG
JMFS022F10+           TCAGCCTCTTAGCTAGCTCTTCAGCAGCGCTTCCCTCCTCCACAGCGGCGGCGGCGGTCG
JMFF017I03+           TCAGCCTCTTAGCTAGCTCTTCAGCAGCGCTTCCCTCCTCCACAGCGGCGGCGGCGGTCG
JMFS073G07+           TCAGCCTCTTAGCTAGCTCTTCAGCAGCGCTTCCCTCCTCCACAGCGGCGGCGGCGGTCG
                      ____________________________________________________________
consensus             TCAGCCTCTTAGCTAGCTCTTCAGCAGCGCTTCCCTCCTCCACAGCGGCGGCGGCGGTCG
 
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JMFS061B10+           GCTTCAGCTTCACCGCGGCCGTCTCCGTCAACATGTTGACCACGGCCGACTCGACTCTGT
JMFS075C04+           GCTTCAGCTTCACCGCGGCGGTCTCCGTCAACATGTTGGCCACGGCCGACTCGACTCTGT
JMFS022F10+           GCTTCAGCTTCACCGCGGCCGTCTCCGTCAACATGTTGACCACGGCCGACTCGACTCTGT
JMFF017I03+           GCTTCAGCTTCACCGCGGCCGTCTCCGTCAACATGTTGACCACGGCCGACTCGACTCTGT
JMSF007D19+                                                                    TGT
JMFS073G07+           GCTTCAGCTTCACCGCGGCCGTCTCCGTCAACATGTTGACCACGGCCGACTCGACTCTGT
                      ____________________________________________________________
consensus             GCTTCAGCTTCACCGCGGCCGTCTCCGTCAACATGTTGACCACGGCCGACTCGACTCTGT
 
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JMFS061B10+           CGTCGGCGGAAAGGATCGATTTGACGCGTGAGACGCACGCGCCGCACATCATCCCCGTCA
JMFS075C04+           CGTCGGCGGAAAGGATCGATTTGACGCGTGAGACGCACGCGCCGCACATCATCCCCGTCA
JMFS022F10+           CGTCGGCGGAAAGGATCGATTTGACGCGTGAGACGCACGCGCCGCACATCATCCCCGTCA
JMFF017I03+           CGTCGGCGGAAAGGATCGATTTGACGCGTGAGACGCACGCGCCGCACATCATCCCCGTCA
JMSF007D19+           CGTCGGCGGAAAGGATCGATTTGACGCGTGAGACGCACGCGCCGCACATCATCCCCGTCA
JMFS073G07+           CGTCGGCGGAAAGGATCGATTTGACGCGTGAGACGCACGCGCCGCACATCATCCCCGTCA
                      ____________________________________________________________
consensus             CGTCGGCGGAAAGGATCGATTTGACGCGTGAGACGCACGCGCCGCACATCATCCCCGTCA
 
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JMFS061B10+           CATCCAGAAGCACAGTTGTGTCGTCCGGCTTCGCTTGCTTCTGAACCGGCTCCGTAGACG
JMFS075C04+           CATCCAGAAGCTCAGTTGTGTCGT--GGCTTCGCTTGCTTCTGAACCGGCTCCGTAGACG
JMFS022F10+           CATCCAGAAGCACAGTTGTGTCGTCCGGCTTCGCTTGCTTCTGAACCGGCTCCGTAGACG
JMFF017I03+           CATCCAGAAGCACAGTTGTGTCGTCCGGCTTCGCTTGCTTCTGAACCGGCTCCGTAGACG
JMSF007D19+           CATCCAGAAGCACAGTTGTGTCGTCCGGCTTCGCTTGCTTCTGAACCGGCTCCGTAGACG
JMFS073G07+           CATCCAGAAGCACAGTTGTGTCGTCCGGCTTCGCTTGCTTCTGAACCGGCTCCGTAGACG
                      ____________________________________________________________
consensus             CATCCAGAAGCACAGTTGTGTCGTCCGGCTTCGCTTGCTTCTGAACCGGCTCCGTAGACG
 
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JMFS061B10+           CGGGTTTGACCTCAAC-TGCCTTGGCGAAGACGCCATTGCGGAGCAATTGGGGATCGGTG
JMFS075C04+           CGGGTTTGACCTCACCTTGCCTTGGCGAAGACGCCATTGCGGAGCAATTGGGGATCGGTG
JMFS022F10+           CGGGTTTGACCTCAAC-TGCCTTGGCGAAGACGCCATTGCGGAGCAATTGGGGATCGGTG
JMFF017I03+           CGGGTTTGACCTCAAC-TGCCTTGGCGAAGACGCCATTGCGGAGCAATTGGGGATCGGTG
JMSF007D19+           CGGGTTTGACCTCAAC-TGCCTTGGCGAAGACGCCATTGCGGAGCAATTGGGGATCGGTG
JMFS073G07+           CGGGTTTGACCTCAAC-TGCCTTGGCGAAGACGCCATTGCGGAGCAATTGGGGATCGGTG
                      ____________________________________________________________
consensus             CGGGTTTGACCTCAAC-TGCCTTGGCGAAGACGCCATTGCGGAGCAATTGGGGATCGGTG
 
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JMFS061B10+           CGGCGTTGTCTGCGGAGGAGAGGATTGAGCTGAAAATTCCTGACATTGGAGTAGTGGAAG
JMFS075C04+           CGGCGTTGTCTCCGGAGGAGAGGATTGAGCTGAAAATTCCTGACATTGGAGTAGTGGAAG
JMFS022F10+           CGGCGTTGTCTGCGGAGGAGAGGATTGAGCTGAAAATTCCTGACATTGGAGTAGTGGAAG
JMFF017I03+           CGGCGTTGTCTGCGGAGGAGAGGATTGAGCTGAAAATTCCTGACATTGGAGTAGTGGAAG
JMSF007D19+           CGGCGTTGTCTGCGGAGGAGAGGATTGAGCTGAAAATTCCTGACATTGGAGTAGTGGAAG
JMFS073G07+           CGGCGTTGTCTGCGGAGGAGAGGATTGAGCTGAAAATTCCTGACATTGGAGTAGTGGAAG
                      ____________________________________________________________
consensus             CGGCGTTGTCTGCGGAGGAGAGGATTGAGCTGAAAATTCCTGACATTGGAGTAGTGGAAG
 
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JMFS061B10+           CTCGGGGTGAGCTT-CTGGTTCGGGGAGAGTGAAAATCGAAGGA                
JMFS075C04+           CTCGGGGTGAGCTTCCTGGTTCGGGGAGAGTGAAAATCGAAGGAGATTGGCCGCCATGGC
JMFS022F10+           CTCGGGGTGAGCTT-CTGGTTCGGGGAGAGTGAAAATCGAAGGAGATTCGCCGCCATGGC
JMFF017I03+           CTCGGGGTGAGCTT-CTGGTTCGGGGAGAGTGAAAATCGAAGGAGATTCGCCGCCATGGC
JMSF007D19+           CTCGGGGTGAGCTT-CTGGTTCGGGGAGAGTGAAAATCGAAGGAGATTCGCCGCCATGGC
JMFS073G07+           CTCGGGGTGAGCTT-CTGGTTCGGGGAGAGTGAAAATCGAAGGAGATTCGCCGCCATGGC
                      ____________________________________________________________
consensus             CTCGGGGTGAGCTT-CTGGTTCGGGGAGAGTGAAAATCGAAGGAGATTCGCCGCCATGGC
 
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JMFS075C04+           TTGCCG                                                      
JMFS022F10+           TTGCCGGAAATGAGGTCCCG                                        
JMFF017I03+           TTGCCGGAAATGAGGTCCCGATTGACCGGAAAAAT                         
JMSF007D19+           TTGCCGGAAATGAGGTCCCGATTGACCGGAAAAAT                         
JMFS073G07+           TTGCCGGAAATGAGGTCCCGATTGACCGGAAAAATGAAGTTTAGGCGTTTCTTGGTCTAT
                      ____________________________________________________________
consensus             TTGCCGGAAATGAGGTCCCGATTGACCGGAAAAATGAAGTTTAGGCGTTTCTTGGTCTAT
 
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JMFS073G07+           TTATGACCGGTAATAAGAAACACGTCGCCACGCTGGCATTATTGCCAATTTCTCATGAAG
                      ____________________________________________________________
consensus             TTATGACCGGTAATAAGAAACACGTCGCCACGCTGGCATTATTGCCAATTTCTCATGAAG