Contig 011794:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS062F11Sequence635011794 (2)ref|XP_010320089.1|3e-30PREDICTED: G-box-binding factor 4 isoform X2 [Solanum lycopersicum]
JMFS072E10Sequence629011794 (2)ref|XP_010320089.1|2e-20PREDICTED: G-box-binding factor 4 isoform X2 [Solanum lycopersicum]

Alignment

This contig is upended


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JMFS062F11+                                           CATGCCCGGCCGCCACTGCAGGTTCATC
                      ____________________________________________________________
consensus                                             CATGCCCGGCCGCCACTGCAGGTTCATC
 
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JMFS062F11+           AACAGCCCCAGCCTTCACCAGAAAATCCTCTAGGGTCATCATTTCATCCATTACCTCTTC
JMFS072E10+                                          AGGGTCATCATTTCATCCATTACCTCTTC
                      ____________________________________________________________
consensus             AACAGCCCCAGCCTTCACCAGAAAATCCTCTAGGGTCATCATTTCATCCATTACCTCTTC
 
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JMFS062F11+           CTTACACTCCACAGTCGGCGCCTCCTTCTGCTGCAGCCTTTTCCCCTCCACAATCTCCCT
JMFS072E10+           CTTACACTCCACAGTCGGCGCCTCCTTCTGCTGCAGCCTTTTCCCCTCCACAATCTCCCT
                      ____________________________________________________________
consensus             CTTACACTCCACAGTCGGCGCCTCCTTCTGCTGCAGCCTTTTCCCCTCCACAATCTCCCT
 
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JMFS062F11+           CCAAACATCGTCCACCGTCTTACGCACCACAGGCGCATTGGCCGGCGACTCGCCGGCCGG
JMFS072E10+           CCAAACATCGTCCACCGTCTTACGCACCACAGGCGCATTGGCCGGCGACTCGCCGGCCGG
                      ____________________________________________________________
consensus             CCAAACATCGTCCACCGTCTTACGCACCACAGGCGCATTGGCCGGCGACTCGCCGGCCGG
 
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JMFS062F11+           CTCAGTATCTCCGGCGACATCCCGCCGCGCAATTCCATCACTCAGAAGTGCGCTACCCGC
JMFS072E10+           CTCAGTATCTCCGGCGACATCCCGCCGCGCAATTCCATCACTCAGAAGTGCGCTACCCGC
                      ____________________________________________________________
consensus             CTCAGTATCTCCGGCGACATCCCGCCGCGCAATTCCATCACTCAGAAGTGCGCTACCCGC
 
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JMFS062F11+           CGCCGCTTGATCATCCGCATACACATTCTCTAAGAATCTGTCGAGGGTCATAAAATTCGA
JMFS072E10+           CGCCGCTTGATCATCCGCATACACATTCTCTAAGAATCTGTCGAGGGTCATAAAATTCGA
                      ____________________________________________________________
consensus             CGCCGCTTGATCATCCGCATACACATTCTCTAAGAATCTGTCGAGGGTCATAAAATTCGA
 
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JMFS062F11+           ATCCGGATTGGTATCATCGCCTTGGTTCTTTGATGCATATTGCTGATTGTGAAAAAAGGC
JMFS072E10+           ATCCGGATTGGTATCATCGCCTTGGTTCTTTGATGCATATTGCTGATTGTGAAAAAAGGC
                      ____________________________________________________________
consensus             ATCCGGATTGGTATCATCGCCTTGGTTCTTTGATGCATATTGCTGATTGTGAAAAAAGGC
 
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JMFS062F11+           CGGTAAAGTCGTGGAAGAAGAAGACAGCGATGCTGCGGTGGAGGCTTTCCGCCGGATATC
JMFS072E10+           CGGTAAAGTCGTGGAAGAAGAAGACAGCGATGCTGCGGTGGAGGCTTTCCGCCGGATATC
                      ____________________________________________________________
consensus             CGGTAAAGTCGTGGAAGAAGAAGACAGCGATGCTGCGGTGGAGGCTTTCCGCCGGATATC
 
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JMFS062F11+           AGAAGTCTGCGCGGTTGAAGAAGAAGCCATAAGCTTCGACGTCGCCATTTCCGAGTGGTA
JMFS072E10+           AGAAGTCTGCGCGGTTGAAGAAGAAGCCATAAGCTTCGACGTCGCCATTTCCGAGTGGTA
                      ____________________________________________________________
consensus             AGAAGTCTGCGCGGTTGAAGAAGAAGCCATAAGCTTCGACGTCGCCATTTCCGAGTGGTA
 
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JMFS062F11+           AATTACTAGGACGCCGATCAAATTCCTTGGTCTATAAATATCTATAGGTATGTGCGTATG
JMFS072E10+           AATTACTAGGACGCCGATCAAATTCCTTGGTCTATAAATATCTATAGGTATGTGCGTATG
                      ____________________________________________________________
consensus             AATTACTAGGACGCCGATCAAATTCCTTGGTCTATAAATATCTATAGGTATGTGCGTATG
 
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JMFS062F11+           AATTATGCGAAGATTGAGTGATGATTATGTGGGTGTTTGGGAAGCAAAGGATTGGCCTAG
JMFS072E10+           AATTATGCGAAGATTGAGTGATGATTATGTGGGTGTTTGGGAAGCAAAGGATTGGCCTAG
                      ____________________________________________________________
consensus             AATTATGCGAAGATTGAGTGATGATTATGTGGGTGTTTGGGAAGCAAAGGATTGGCCTAG
 
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JMFS062F11+           GGTTTTG                                                     
JMFS072E10+           GGTTTTGGAGTATAACACTCCTGTTCTTTGGCTCGTTGGGATTACACAAGGAGAAAGGTA
                      ____________________________________________________________
consensus             GGTTTTGGAGTATAACACTCCTGTTCTTTGGCTCGTTGGGATTACACAAGGAGAAAGGTA