Contig 011793:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027E04Sequence564011793 (3)gb|AAO26684.1|AF478370_12e-62gag-pol polyprotein [Vitis vinifera]756004362 (5)ref|XP_004232438.1|209PREDICTED: uncharacterized protein LOC101268534 [Solanum lycopersicum]
JMFF044P03Sequence638011793 (3)gb|AAO26684.1|AF478370_14e-62gag-pol polyprotein [Vitis vinifera]615004362 (5)ref|XP_004232438.1|140PREDICTED: uncharacterized protein LOC101268534 [Solanum lycopersicum]
JMFS072D09Sequence481011793 (3)gb|AFK44938.1|5e-41unknown [Lotus japonicus]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF044P03+ TTAAGCCACCATTACCATTAGGAATCCAATAA
                      ____________________________________________________________
consensus TTAAGCCACCATTACCATTAGGAATCCAATAA
 
. : . : . : . : . : . :
JMFF044P03+ TTAGAATCTTATTGAAATAGAAATAGTTTCTTTCCTAATCACCCACCATAAACCTAACGA
JMFF027E04+ CCACCATAAACCTAACGA
                      ____________________________________________________________
consensus TTAGAATCTTATTGAAATAGAAATAGTTTCTTTCCTAATCACCCACCATAAACCTAACGA
 
. : . : . : . : . : . :
JMFF044P03+ ATTGCTTCCAATAGCAAAATAACTACAGTACTACACAAATNTTCTACAAAAACTACCTGG
JMFF027E04+ ATTGCTTCCAATAGCAAAATAACTACAGTACTACACAAATTTTCTACAAAAACTACCTGG
                      ____________________________________________________________
consensus ATTGCTTCCAATAGCAAAATAACTACAGTACTACACAAATTTTCTACAAAAACTACCTGG
 
. : . : . : . : . : . :
JMFF044P03+ TATAAGTCTATGACAGGCTATTGTGTGTTTGTAGGAGGCAACTTGGTCTCGTGGAAGAGT
JMFF027E04+ TATAAGTCTATGACAGGCTATTGTGTGTTTGTAGGAGGCAACTTGGTCTCGTGGAAGAGT
                      ____________________________________________________________
consensus TATAAGTCTATGACAGGCTATTGTGTGTTTGTAGGAGGCAACTTGGTCTCGTGGAAGAGT
 
. : . : . : . : . : . :
JMFF044P03+ AAGAAGCAGAATGTAGTGTCGCGCTCGAGTGCAGAGTCTGAATACAGGGCTATGGCTCAT
JMFF027E04+ AAGAAGCAGAATGTAGTGTCGCGCTCGAGTGCAGAGTCTGAATACAGGGCTATGGCTCAT
                      ____________________________________________________________
consensus AAGAAGCAGAATGTAGTGTCGCGCTCGAGTGCAGAGTCTGAATACAGGGCTATGGCTCAT
 
. : . : . : . : . : . :
JMFF044P03+ ATGACTAGTGAAATAGTCTGGGTGCATAATGTTCTAAAAGAAGTGGGTGTTGAAGTGAAG
JMFF027E04+ ATGACTAGTGAAATAGTCTGGGTGCATAATGTTCTAAAAGAAGTGGGTGTTGAAGTGAAG
JMFS072D09- GAAATAGTCTGGGTGCGTAACATTCTAAAAGAAGTGGGTGTTGAAGTTAAG
                      ____________________________________________________________
consensus ATGACTAGTGAAATAGTCTGGGTGCATAATGTTCTAAAAGAAGTGGGTGTTGAAGTGAAG
 
. : . : . : . : . : . :
JMFF044P03+ TTACCAATAGATTTGTGGTGAGATAATTGTGCTGCCATACACATCGCGAATAATCCGGTT
JMFF027E04+ TTACCAATAGATTTGTGGTGAGATAATTGTGCTGCCATACACATCGCGAATAATCCGGTT
JMFS072D09- TTACCGGTAGATTTGTGGTGTGATAACTGTGCTGCCATACACATCGCAAATAATCCGGTC
                      ____________________________________________________________
consensus TTACCAATAGATTTGTGGTGAGATAATTGTGCTGCCATACACATCGCGAATAATCCGGTT
 
. : . : . : . : . : . :
JMFF044P03+ TTTCACAAGCGGACAACGCATATTGAGGTTGACTGCCATTTTATACAGGAGAAAGAGGAA
JMFF027E04+ TTTCACAAGCGGACAACGCATATTGAGGTTGACTGCCATTTTATACAGGAGAAAGAGGAA
JMFS072D09- TTTCACGAGCGGACGAAGCATATTGAAGTGGACTGCCATTTTATACGGGAAAAAGTGGAG
                      ____________________________________________________________
consensus TTTCACAAGCGGACAACGCATATTGAGGTTGACTGCCATTTTATACAGGAGAAAGAGGAA
 
. : . : . : . : . : . :
JMFF044P03+ CAAGGACTGATATCTATTACACATGTCCGGAGCGGTGATCAACTGGCCGACATATTCACA
JMFF027E04+ CAAGGACTGATATCTATTACACATGTCCGGAGCGGTGATCAACTGGCCGACATATTCACA
JMFS072D09- CAAGGACTAATATCACTTACACATGTTCGGAGCGGTGATCAACTGGCTGACATATTCACG
                      ____________________________________________________________
consensus CAAGGACTGATATCTATTACACATGTCCGGAGCGGTGATCAACTGGCCGACATATTCACA
 
. : . : . : . : . : . :
JMFF044P03+ AAAGGGCTTAGTAAGAGTCAGGTTTTATATATATGTAACAAGTTGGGCATGTTTGATATC
JMFF027E04+ AAAGGGCTTAGTAAGAGTCAGGTTTTATATATATGTAACAAGTTGGGCATGTTTGATATC
JMFS072D09- AAAGGGTTGTGTAAGAATCGGGTTTCATATATATGTAACAAGTTGGGCATGTTTGATATC
                      ____________________________________________________________
consensus AAAGGGCTTAGTAAGAGTCAGGTTTTATATATATGTAACAAGTTGGGCATGTTTGATATC
 
. : . : . : . : . : . :
JMFF044P03+ TATGCTCCAACTTGAGGGGGAGTGTTA
JMFF027E04+ TATGCTCCAACTTGAGGGGGAGTGTTA
JMFS072D09- TATGCTCCAACTTGAGGGGGAGTGTTAGTAGGTTGTTAGAGGGATCCTCCTAACTACCCA
                      ____________________________________________________________
consensus TATGCTCCAACTTGAGGGGGAGTGTTAGTAGGTTGTTAGAGGGATCCTCCTAACTACCCA
 
. : . : . : . : . : . :
JMFS072D09- TTTGAATTTCGAAATGAGTGGTTAGGAGTATCCATTGCCTTGTATATAAGCGGAGGCTTT
                      ____________________________________________________________
consensus TTTGAATTTCGAAATGAGTGGTTAGGAGTATCCATTGCCTTGTATATAAGCGGAGGCTTT
 
. : . : . : . : . : . :
JMFS072D09- CTTTGTTCTCGACACAGTGTTAATGTTTCACAGTGCAATATACACACTTCACTTTAGAGC
                      ____________________________________________________________
consensus CTTTGTTCTCGACACAGTGTTAATGTTTCACAGTGCAATATACACACTTCACTTTAGAGC