Contig 011774:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN034D09+                                     TTGAAAGTGGTATATTATTTGCGATGGATAATAG
rJMFF026J19-                                   ATTGAAAGTGGTATATTATTTGCGATGGATAATAG
                      ____________________________________________________________
consensus                                      ATTGAAAGTGGTATATTATTTGCGATGGATAATAG
 
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JMFN034D09+           TATAATACACTGAAAAAGCACTCACTTATAGAAATTTACAAACATATATAGGCAGCGCCA
JMFN012M17+              AATACACTGAAAAAGCACTCACTTATAGAAATTTACAAACATATATAGGCAGCGCCA
JMFN004P10+              AATACACTGAAAAAGCACTCACTTATAGAAATTTACAAACATATATAGGCAGCGCCA
rJMFF026J19-          TATAATACACTGAAAAAGCACTCACTTATAGAAATTTACAAACATATATAGGCAGCGCCA
                      ____________________________________________________________
consensus             TATAATACACTGAAAAAGCACTCACTTATAGAAATTTACAAACATATATAGGCAGCGCCA
 
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JMFN034D09+           ACCAACCAACTAACCAACATGGGCACAATCTCATTCCACAAATAAACAAAAGCAATTTTA
JMFN012M17+           ACCAACCAACTAACCAACATGGGCACAATCTCATTCCACAAATAAACAAAAGCAATTTTA
JMFN004P10+           ACCAACCAACTAACCAACATGGGCACAATCTCATTCCACAAATAAACAAAAGCAATTTTA
JMFN004O11+                      AACCAACATGGGCACAATCTCATTCCACAAATAAACAAAAGCAATTTTA
rJMFF026J19-          ACCAACCAACTAACCAACATGGGCACAATCTCATTCCACAAATAAACAAAAGCAATTTTA
                      ____________________________________________________________
consensus             ACCAACCAACTAACCAACATGGGCACAATCTCATTCCACAAATAAACAAAAGCAATTTTA
 
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JMFN034D09+           ACTTATATAATATCCAGGTACTAGCTAGCCTTTAATTTGGTCCACTCCACTCTTTAATTG
JMFN012M17+           ACTTATATAATATCCAGGTACTAGCTAGCCTTTAATTTGGTCCACTCCACTCTTTAATTG
JMFN004P10+           ACTTATATAATATCCAGGTACTAGCTAGCCTTTAATTTGGTCCACTCCACTCTTTAATTG
JMFN004O11+           ACTTATATAATATCCAGGTACTAGCTAGCCTTTAATTTGGTCCACTCCACTCTTTAATTG
rJMFF026J19-          ACTTATATAATATCCAGGTACTAGCTAGCCTTTAATTTGGTCCACTCCACTCTTTAATTG
                      ____________________________________________________________
consensus             ACTTATATAATATCCAGGTACTAGCTAGCCTTTAATTTGGTCCACTCCACTCTTTAATTG
 
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JMFN034D09+           ATCAATCATATAGTCCATTCCTTGAGTTCCTCTTATTGCACAACCGGAAGTTATCACGAC
JMFN012M17+           ATCAATCATATAGTCCATTCCTTGAGTTCCTCTTATTGCACAACCGGAAGTTATCACGAC
JMFN004P10+           ATCAATCATATAGTCCATTCCTTGAGTTCCTCTTATTGCACAACCGGAAGTTATCACGAC
JMFN004O11+           ATCAATCATATAGTCCATTCCTTGAGTTCCTCTTATTGCACAACCGGAAGTTATCACGAC
rJMFF026J19-          ATCAATCATATAGTCCATTCCTTGAGTTCCTCTTATTGCACAACCGGAAGTTATCACGAC
                      ____________________________________________________________
consensus             ATCAATCATATAGTCCATTCCTTGAGTTCCTCTTATTGCACAACCGGAAGTTATCACGAC
 
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JMFN034D09+           GTGAACCAAATCTAGCTAATCACTGCTTGAAGAAATTAACATAAATGAAGCTAAGCCTGC
JMFN012M17+           GTGAACCAAATCTAGCTAATCACTGCTTGAAGAAATTAACATAAATGAAGCTAAGCCTGC
JMFN004P10+           GTGAACCAAATCTAGCTAATCACTGCTTGAAGAAATTAACATAAATGAAGCTAAGCCTGC
JMFN004O11+           GTGAACCAAATCTAGCTAATCACTGCTTGAAGAAATTAACATAAATGAAGCTAAGCCTGC
rJMFF026J19-          GTGAACCAAATCTAGCTAATCACTGCTTGAAGAAATTAACATAAATGAAGCTAAGCCTGC
                      ____________________________________________________________
consensus             GTGAACCAAATCTAGCTAATCACTGCTTGAAGAAATTAACATAAATGAAGCTAAGCCTGC
 
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JMFN034D09+           TACATGCATTGCACCCAGCAGGA------ATACTTGCATGAAATATATATTCCACTATTT
JMFN012M17+           TACATGCATTGCACCCAGCAGGAATATTGATACTTGCATGAAATATATATTCCACTATTT
JMFN004P10+           TACATGCATTGCACCCAGCAGGAATATTGATACTTGCATGAAATATATATTCCACTATTT
JMFN004O11+           TACATGCATTGCACCCAGCAGGAATATTGATACTTGCATGAAATATATATTCCACTATTT
rJMFF026J19-          TACATGCATTGCACCCAGCAGGAATATTGATACTTGCATGAAATATATATTCCACTATTT
JMFN042D16+                                GAATATTGATACTTGCATGAAATATATATTCCACTA-TT
                      ____________________________________________________________
consensus             TACATGCATTGCACCCAGCAGGAATATTGATACTTGCATGAAATATATATTCCACTATTT
 
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JMFN034D09+           TATTACGGGTGAGGGATATGAGGAGGCAGAGGAGGGAGGAGTGGATGGTGG-AATGGAGG
JMFN012M17+           TATTACGGGTGAGGGATATGAGGAGGCAGAGGAGGGAGGAGTGGATGGTGG-AATGGAGG
JMFN004P10+           TATTACGGGTGAGGGATATGAGGAGGCAGAGGAGGGAGGAGTGGATGGTGG-AATGGAGG
JMFN004O11+           TATTACGGGTGAGGGATATGAGGAGGCAGAGGAGGGAGGAGTGGATGGTG          
rJMFF026J19-          TATTACGGGTGAGGGATATGAGGAGGCAGAGGAGGGAGGAGTGGATGGTGGAAATGGAGG
JMFN042D16+           TATTACGGGTGAGGGATATGAGGAGGCAGAGGAGGGAGGAGTGGATGGTGG-AATGGAGG
JMFN012H05+                     GAGGGATATGAGGAGGCAGAGGAGGGAGGAGTGGATGGTGG-AATGGAGG
                      ____________________________________________________________
consensus             TATTACGGGTGAGGGATATGAGGAGGCAGAGGAGGGAGGAGTGGATGGTGG-AATGGAGG
 
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JMFN034D09+           AAGGCTTATTGGGATCTTGGGTGGGCATGGTTTCTTTACTATTGGCGGCAAGGGTTTGTA
JMFN012M17+           AAGGCTTATTGGGATCTTGGGTGGGCATGGTTTCTTTACTATTGGCGGCAAGGGTTTGTA
JMFN004P10+           AAGGCTTATTGGGATCTTGGGTGGGCATGGTTTCTTTACTATTGGCGGCAAGGGTTTGTA
rJMFF026J19-          AAGGCTTATTGGGATCTTGGGTGGGCATGGTTTCTTTACTATTGGCGGCAAGGGTTTGTA
JMFN042D16+           AAGTCTTATTGGGATCTTGGGTGGGCATGGTTTCTTTACTATTGGCGGCAAGGGTTTGTA
JMFN012H05+           AAGGCTTATTGGGATCTTGGGTGGGCATGGTTTCTTTACTATTGGCGGCAAGGGTTTGTA
                      ____________________________________________________________
consensus             AAGGCTTATTGGGATCTTGGGTGGGCATGGTTTCTTTACTATTGGCGGCAAGGGTTTGTA
 
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JMFN034D09+           GATGGGGAATGGAGGTGGAAGTGGTTTTACTATTGGAGGAATGTAAATA-GGTGGTTTTG
JMFN012M17+           GATGGGGAATGGAGGTGGAAGTGGTTTTACTATTGGAGGAATGTAAATAGGT        
JMFN004P10+           GATGGGGAATGGAGGTGGAAGTGGTTTTACTATTGGAGGAATGTAAA             
rJMFF026J19-          GATGGGGAATGGAGGTGGAAGTGGTTTTACTATTGGAGGAATGTAAATAGGGTGGTTTTG
JMFN042D16+           GATGGGGAATGGAGGTGGAAGTGGTTTTACTATTGGAGGAATGTAAATA-GGTGGTTTTG
JMFN012H05+           GATGGGGAATGGAGGTGGAAGTGGTTTTACTATTGGAGGAATGTAAATA-GGTGGTTTTG
                      ____________________________________________________________
consensus             GATGGGGAATGGAGGTGGAAGTGGTTTTACTATTGGAGGAATGTAAATAGGGTGGTTTTG
 
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JMFN034D09+           GTTTTGGCTTGTAGATAGGAATCAAAGGCGGATGTGGCTTTACAATTGGAGGAATGTAAA
rJMFF026J19-          GTTTTGGCTTGTANATAGGAATCAAAGGCGGATGTGGCTTTACAATTGGAGGAATGTAAA
JMFN042D16+           GTTTTGGCTTGTAGATAGGAATCAAAGGCGGATGTGGCTTTACAATTGGAGGAATGTAAA
JMFN012H05+           GTTTTGGCTTGTAGATAGGAATCAAAGGCGGATGTGGCTTTACAATTGGAGGAATGTAAA
                      ____________________________________________________________
consensus             GTTTTGGCTTGTAGATAGGAATCAAAGGCGGATGTGGCTTTACAATTGGAGGAATGTAAA
 
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JMFN034D09+           C                                                           
rJMFF026J19-          CCGGTGGCTTTGGCTTGTAAATGGGGACAGGAGGTGGAAGTGGCTTTACAGGNGGAATGT
JMFN042D16+           CCGGTGGCTTTGGCTTGTAAATGGGGACAGGAGGTGGAAGTGGCTTTACAGGTGGAATGT
JMFN012H05+           CCGGTGGCTTTGGCTTGTAAATGGGGACAGGAGGTGGAAGTGGCTTTACAGGTGGAATGT
                      ____________________________________________________________
consensus             CCGGTGGCTTTGGCTTGTAAATGGGGACAGGAGGTGGAAGTGGCTTTACAGGTGGAATGT
 
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rJMFF026J19-          AAATTGGNGGCTTANGTTTANGNTTGTAAATGGNAACNGGAGG                 
JMFN042D16+           AAATTGGTGGCTTAGGTTTAGGTTTGTAGATGGGAACGGGAGGTGGGAGTGGCTTTATAG
JMFN012H05+           AAATTGGTGGCTTAGGTTTAGGTTTGTAGATGGGAACGGGAGGTGGGAGTGGCTTTATAG
JMFS049E01+                                                                TTTATAG
                      ____________________________________________________________
consensus             AAATTGGTGGCTTAGGTTTAGGTTTGTAGATGGGAACGGGAGGTGGGAGTGGCTTTATAG
 
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JMFN042D16+           GTGGGATGTAAACGGGTGGCTTAGGCTTTGGCTTGTAGATGGGAACGGTGGGTGGGCATG
JMFN012H05+           GTGGGATGTAAACGGGTGGCTTAGGCTTTGGCTTGTAGATGGGAACGGTGGGTGGGCATG
JMFS049E01+           GTGGGATGTAAACGGGTGGCTTAGGCTTTGGCTTGTAGATGGGAACGGTGGGTGGGCATG
                      ____________________________________________________________
consensus             GTGGGATGTAAACGGGTGGCTTAGGCTTTGGCTTGTAGATGGGAACGGTGGGTGGGCATG
 
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JMFN042D16+           GCTTTACTACAGGTGGAATATAAACCGGTGGCTTAGGCTTTGGCTTGTAGATAGGGACGG
JMFN012H05+           GCTTTACTACAGGTGGAATATAAACCGGTGGCTTAGGCTTTGGCTTGTAGATAGGGACGG
JMFS049E01+           GCTTTACTACAGGTGGAATATAAACCGGTGGCTTAGGCTTTGGCTTGTAGATAGGGACGG
                      ____________________________________________________________
consensus             GCTTTACTACAGGTGGAATATAAACCGGTGGCTTAGGCTTTGGCTTGTAGATAGGGACGG
 
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JMFN042D16+           TGGGCGGACATGGCTTTACTACAGGTGGAACATAAACCGGTGGCTTAGGCTTTGGCTTGT
JMFN012H05+           TGGGCGGACATGGCTTTACTACAGGTGGAACATAAACCGGTGGCTTAGGCTTTGGCTTGT
JMFS049E01+           TGGGCGGACATGGCTTTACTACAGGTGGAACATAAACCGGTGGCTTAGGCTTTGGCTTGT
                      ____________________________________________________________
consensus             TGGGCGGACATGGCTTTACTACAGGTGGAACATAAACCGGTGGCTTAGGCTTTGGCTTGT
 
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JMFN042D16+           AGATGGGGACAGGGGGTGGGAGTGGCTTTACCGGAGGAATGTAAA               
JMFN012H05+           AGATGGGGACAGGGGGTGGGAGTGGCTTTACCGGAGGAATGTAAACTGGTGGCTTTGGCT
JMFS049E01+           AGATGGGGACAGGGGGTGGGAGTGGCTTTACCGGAGGAATGTAAACTGGTGGCTTTGGCT
                      ____________________________________________________________
consensus             AGATGGGGACAGGGGGTGGGAGTGGCTTTACCGGAGGAATGTAAACTGGTGGCTTTGGCT
 
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JMFN012H05+           TTGGCTTGTAGATGGGGACGGGAGGTGGGAGTGGCTTTA                     
JMFS049E01+           TTGGCTTGTAGATGGGGACGGGAGGTGGGAGTGGCTTTACTGGTGGAATGTAAATCGGTG
                      ____________________________________________________________
consensus             TTGGCTTGTAGATGGGGACGGGAGGTGGGAGTGGCTTTACTGGTGGAATGTAAATCGGTG
 
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JMFN020H19+                                                         TACAGGTGGAATGT
JMFS049E01+           GCTTAGGTTTTGGCTTGTAGATGGGGACAGGGGGTGGGAGTGGCTTTACTGGTGGAATGT
                      ____________________________________________________________
consensus             GCTTAGGTTTTGGCTTGTAGATGGGGACAGGGGGTGGGAGTGGCTTTACTGGTGGAATGT
 
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JMFN020H19+           AAATTGGTGGCTTTGGCTTTGGCTTGTAGATAGGGACCGGGGGTGGGAGTGGCTTTACTG
JMFS049E01+           AAACTGGTGGCTTTGGCTTTGGCTTGTAGATAGGGACCGGGGGTGGGAGTGGCTTTACTG
                      ____________________________________________________________
consensus             AAATTGGTGGCTTTGGCTTTGGCTTGTAGATAGGGACCGGGGGTGGGAGTGGCTTTACTG
 
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JMFN020H19+           GTGGAATGTAAACTGGTGGCTTAGGCTTTGGCTTGTAGATGGG                 
JMFS049E01+           GTGGAATGTAAACTGGTGGCTTAGGCTTTGGCTTGTAGATGGGGACAGGGGGTGGGAGTG
                      ____________________________________________________________
consensus             GTGGAATGTAAACTGGTGGCTTAGGCTTTGGCTTGTAGATGGGGACAGGGGGTGGGAGTG
 
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JMFS049E01+           GCTTTACTGGTGGAATGTAAACTGGTGGCTTTGGCTTTGGCTTGTAGATGGGGACTGGGG
                      ____________________________________________________________
consensus             GCTTTACTGGTGGAATGTAAACTGGTGGCTTTGGCTTTGGCTTGTAGATGGGGACTGGGG
 
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JMFS049E01+           GTGGGAGTGGCTTTACTGGTGGAATGTAAACTGGTGGCTTTGGCTTTGGCTTGTAGATGG
                      ____________________________________________________________
consensus             GTGGGAGTGGCTTTACTGGTGGAATGTAAACTGGTGGCTTTGGCTTTGGCTTGTAGATGG