Contig 011770:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF005G01-                                                                   GAAC
                      ____________________________________________________________
consensus                                                                     GAAC
 
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JMSF005G01-           TGCCTCATACATGAAGCTTGAACGATGGGCTGAAGCTGCAAGAGATTATGAAATTTTGAA
                      ____________________________________________________________
consensus             TGCCTCATACATGAAGCTTGAACGATGGGCTGAAGCTGCAAGAGATTATGAAATTTTGAA
 
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JMSF005G01-           GAGGGAACTTCCTTATGACAATGAGGTTGCTGAATCTCTGTTTCATGCCCAAGTCGCACT
                      ____________________________________________________________
consensus             GAGGGAACTTCCTTATGACAATGAGGTTGCTGAATCTCTGTTTCATGCCCAAGTCGCACT
 
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JMSF005G01-           GAAGAAATCTCGGGGAGAAGACATTTATAATATGAAATTTGGTGGAGAGGTCGAAATAGT
                      ____________________________________________________________
consensus             GAAGAAATCTCGGGGAGAAGACATTTATAATATGAAATTTGGTGGAGAGGTCGAAATAGT
 
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JMSF005G01-           TTCAGGTCTTGACCAGTTCAGAGCTGCAATTTCATCTCCAGGTGCATCTGTTGTACATTT
                      ____________________________________________________________
consensus             TTCAGGTCTTGACCAGTTCAGAGCTGCAATTTCATCTCCAGGTGCATCTGTTGTACATTT
 
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JMSF005G01-           TAAAACGGCATCCAATGTTCAGTGCAAACAGATCGCCCCATTCTTGGACACGTTGTGCAC
rJMSF024D23+                                                         ACACGTTGTGCAC
                      ____________________________________________________________
consensus             TAAAACGGCATCCAATGTTCAGTGCAAACAGATCGCCCCATTCTTGGACACGTTGTGCAC
 
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JMSF005G01-           TAGATATCCATCAATAAATTTTCTCATGGTGGATGTAGAAGAGAGCCCTGCAATTGCTAA
rJMSF024D23+          TAGATATCCATCAATAAATTTTCTCATGGTGGATGTAGAAGAGAGCCCTGCAATTGCTAA
                      ____________________________________________________________
consensus             TAGATATCCATCAATAAATTTTCTCATGGTGGATGTAGAAGAGAGCCCTGCAATTGCTAA
 
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JMSF005G01-           TGCCGAGAATGTTAGAATTGTACCGACATTCAAATTTACNAAAAGAGCA           
rJMSF024D23+          TGCCGAGAATGTTAGAATTGTACCGACATTCAAAATTACAAAAAGAGCAGCAGAGTGAAG
rJMFF033O10+                                             TTACAAAAAGAGCAGCAGAGTGAAG
                      ____________________________________________________________
consensus             TGCCGAGAATGTTAGAATTGTACCGACATTCAAATTTACAAAAAGAGCAGCAGAGTGAAG
 
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rJMSF024D23+          GAAATGGTGTGCCCGAGTCCCGAGGTGTTGGAGTCTTCGGTGAGGCATTACAGTACTTAG
rJMFF033O10+          GAAATGGTGTGCCCGAGTCCCGAGGTGTTGGAGTCTTCGGTGAGGCATTACAGTACTTAG
                      ____________________________________________________________
consensus             GAAATGGTGTGCCCGAGTCCCGAGGTGTTGGAGTCTTCGGTGAGGCATTACAGTACTTAG
 
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rJMFF015J11+                                    TCTCCTCGCATTCCCTCGTGCCCCCAAAATTANT
rJMSF024D23+          TACTCGGTACTTGCTTCTTCACCTCTTCTCCTCGCATTCCCTCGTGCCCCCAAAATTACT
rJMFF033O10+          TACTCGGTACTTGCTTCTTCACCTCTTCTCCTCGCATTCCCTCGTGCCCCCAAAATTACT
JMFS046A02+                                                         CCCCCAAAATTACT
                      ____________________________________________________________
consensus             TACTCGGTACTTGCTTCTTCACCTCTTCTCCTCGCATTCCCTCGTGCCCCCAAAATTACT
 
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rJMFF015J11+          GGGATCAGCTCCTCCCTGCATAATACTATTATTACCTGTGACATAATCAGACCTACCGCA
rJMSF024D23+          GGGATCAGCTCCTCCCTGCATAATACTATTATTACCTGTGACATAATCAGACCTACCGCA
rJMFF033O10+          GGGATCAGCTCCTCCCTGCATAATACTATTATTACCTGTGACATAATCAGACCTACCGCA
JMFS046A02+           GGGATCAGCTCCTCCCTGCATAATACTATTATTACCTGTGACATAATCAGACCTACCGCA
                      ____________________________________________________________
consensus             GGGATCAGCTCCTCCCTGCATAATACTATTATTACCTGTGACATAATCAGACCTACCGCA
 
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rJMFF015J11+          AATAATCCCATTAGGAGCCATTTTGGCCTAAAGGCCAGTGGAATTCGGAGGAATAGTTTA
rJMSF024D23+          AATAATCCCATTAGGAGCCATTTTGGCCTAAAGGCCAGTGGAATTCGGAGGAATAGTTTA
rJMFF033O10+          AATAATCCCATTAGGAGCCATTTTGGCCTAAAGGCCAGTGGAATTCGGAGGAATAGTTTA
JMFS046A02+           AATAATCCCATTAGGAGCCATTTTGGCCTAAAGGCCAGTGGAATTCGGAGGAATAGTTTA
                      ____________________________________________________________
consensus             AATAATCCCATTAGGAGCCATTTTGGCCTAAAGGCCAGTGGAATTCGGAGGAATAGTTTA
 
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rJMFF015J11+          GTACATTTTCCCCTTTTTACATTTTATTCATTCATGGTTCCACAAGTCTTCCCCGTCCCC
rJMSF024D23+          GTACATTTTCCCCTTTTTACATTTTATTCATTCATGGTTCCACAAGTCTTCCCCGTCCCC
rJMFF033O10+          GTACATTTTCCCCTTTTTACATTTTATTCATTCATGGTTCCACAAGTCTTCCCCGTCCCC
JMFS046A02+           GTACATTTTCCCCTTTTTACATTTTATTCATTCATGGTTCCACAAGTCTTCCCCGTCCCC
                      ____________________________________________________________
consensus             GTACATTTTCCCCTTTTTACATTTTATTCATTCATGGTTCCACAAGTCTTCCCCGTCCCC
 
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rJMFF015J11+          TTTTCTTTGTAATTCTTTTCTTCTTTTTTATTTCCCCGAAAATTTTCATATAGGCTGGCC
rJMSF024D23+          TTTTCTTTGTAATTCTTTTCTTCTTTTTTATTTCCCCGAAAATTTTCATATAGGCTGGCC
rJMFF033O10+          TTTTCTTTGTAATTCTTTTCTTCTTTTTTATTTCCCCGAAAATTTTCATATAGGCTGGCC
JMFS046A02+           TTTTCTTTGTAATTCTTTTCTTCTTTTTTATTTCCCCGAAAATTTTCATATAGGCTGGCC
                      ____________________________________________________________
consensus             TTTTCTTTGTAATTCTTTTCTTCTTTTTTATTTCCCCGAAAATTTTCATATAGGCTGGCC
 
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rJMFF015J11+          TCTTCTTAGTACCTACCCCCATCTTCTCTCGTAAACGAGAGACATTGAAATCAATATGTA
rJMSF024D23+          TCTTCTTAGTACCTACCCCCATCTTCTCTCGTAAACGAGAGACATTGAAATCAATATGTA
rJMFF033O10+          TCTTCTTAGTACCTACCCCCATCTTCTCTCGTAAACGAGAGACATTGAAATCAATATGTA
JMFS046A02+           TCTTCTTAGTACCTACCCCCATCTTCTCTCGTAAACGAGAGACATTGAAATCAATATGTA
                      ____________________________________________________________
consensus             TCTTCTTAGTACCTACCCCCATCTTCTCTCGTAAACGAGAGACATTGAAATCAATATGTA
 
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rJMFF015J11+          CAATTCATTACAATGGCCCTTTAGGTGGAAATGTTTAGAGAGACAGATGGCCGGCTTGTC
rJMSF024D23+          CAATTCATTACAATGGCCCTTTAGGTGGAAATGTTTAGAGAGACAGATGGCCGGCTTGTC
rJMFF033O10+          CAATTCATTACAATGGCCCTTTAGGTGGAAATGTTTAGAGAGACAGATGGCCGGCTTGTC
JMFS046A02+           CAATTCATTACAATGGCCCTTTAGGTGGAAATGTTTAGAGAGACAGATGGCCGGCTTGTC
                      ____________________________________________________________
consensus             CAATTCATTACAATGGCCCTTTAGGTGGAAATGTTTAGAGAGACAGATGGCCGGCTTGTC
 
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rJMSF005G01+             TTTGGATGAGGATCTAAACANGTAGATNCACANGATATAATACATACCCCCGTAAAA
rJMFF015J11+          GGCTTTGGATGAGGATCTAAACATGTAGATACACATGATATAATACATACCCCCGTAAAA
rJMSF024D23+          GGCTTTGGATGAGGATCTAAACATGTAGATACACATGATATAATACATACCCCCGTAAAA
rJMFF033O10+          GGCTTTGGATGAGGATCTAAACATGTAGATACACATGATATAATACATACCCCCGTAAAA
JMFS046A02+           GGCTTTGGATGAGGATCTAAACATGTAGATACACATGATATAATACATACCCCCGTAAAA
                      ____________________________________________________________
consensus             GGCTTTGGATGAGGATCTAAACATGTAGATACACATGATATAATACATACCCCCGTAAAA
 
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rJMSF005G01+          AACACGACGGGCCATTGAGGGAGATTGGATGGGANGTGTGGCGGAGACGTCATCGGGGTT
rJMFF015J11+          AACACGACGGGCCATTGAGGGAGATTGGATTGGATGTGTGGCGGAGACTTCATCGGGGTT
rJMSF024D23+          AACACGACGGGCCATTGAGGGAGATTGGATTGGATGTGTGGCGGAGACTTCATCGGGGTT
rJMFF033O10+          AACACGACGGGCCATTGAGGGAGATTGGATTGGATGTGTGGCGGAGACTTCATCGGGGTT
JMFS046A02+           AACACGACGGGCCATTGAGGGAGATTGGATTGGATGTGTGCCGGAGACTTCATCGGGGTT
                      ____________________________________________________________
consensus             AACACGACGGGCCATTGAGGGAGATTGGATTGGATGTGTGGCGGAGACTTCATCGGGGTT
 
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rJMSF005G01+          AGTGAAAGAAGGTTGAATATGATGTTGTTAT                             
rJMFF015J11+          AGTGAAAGAAGGTTGAATATGATGTTGTTATTGATATTAT                    
rJMSF024D23+          AGTGAAAGAAGGTTGAATATGATGTTGTTATTGATATTATGATGTTT             
rJMFF033O10+          AGTGAAAGAAGGTTGAATATGATGTTGTTATTGATATTATGATGTTTTCTTTGCATAACC
JMFS046A02+           AGTGAAAGAAGGTTGAATATGATGTTGTTATTGATATTATGATGTTTTCTTTGCATAACC
                      ____________________________________________________________
consensus             AGTGAAAGAAGGTTGAATATGATGTTGTTATTGATATTATGATGTTTTCTTTGCATAACC
 
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rJMFF033O10+          ATCAATAAAAA                                                 
JMFS046A02+           ATCAATAAAAATTTCTCTTATTCTATTAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC
                      ____________________________________________________________
consensus             ATCAATAAAAATTTCTCTTATTCTATTAAAAAAAAAAAAAAAAAAACTCGAGACTAGTTC