Contig 011755:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049L23Sequence439011755 (3)ref|XP_011077495.1|7e-30PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Sesamu483011755 (3)ref|XP_011077495.1|1e-29PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Sesamu
JMFS029F11Sequence524011755 (3)ref|XP_011077495.1|1e-29PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Sesamu

Alignment

This contig is upended


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JMFF049L23+                                                         AATTGCAGTGACTG
rJMFF049L23-          GGCCCTTATGGCGGATCTACCTGGAGAGTTTTTTTTTTTTTTTTGGAATTGCAGTGACTG
JMFS029F11+                                                 TTTTTTGAAATTGCAGTGACTG
                      ____________________________________________________________
consensus             GGCCCTTATGGCGGATCTACCTGGAGAGTTTTTTTTTTTTTTTTGGAATTGCAGTGACTG
 
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JMFF049L23+           TAAATCGTCATCATTATTGAGTAAAAGAATGTCATGACTTTTTTGTTACAATGCTTGGAA
rJMFF049L23-          TAAATCGTCATCATTATTGAGTAAAAGAATGTCATGACTTTTTTGTTACAATGCTTGGAA
JMFS029F11+           TAAATCGTCATCATTATTGAGTAAAAGAATGTCATGACTTTTTTGTTACAATGCTTGGAA
                      ____________________________________________________________
consensus             TAAATCGTCATCATTATTGAGTAAAAGAATGTCATGACTTTTTTGTTACAATGCTTGGAA
 
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JMFF049L23+           GCACAGACCAAAACCACAAAGCAAAACACAAGAGATGGACATTATAGGTGTTTGCCCACA
rJMFF049L23-          GCACAGACCAAAACCACAAAGCAAAACACAAGAGATGGACATTATAGGTGTTTGCCCACA
JMFS029F11+           GCACAGACCAAAACCACAAAGCAAAACACAAGAGATGGACATTATAGGTGTTTGCCCACA
                      ____________________________________________________________
consensus             GCACAGACCAAAACCACAAAGCAAAACACAAGAGATGGACATTATAGGTGTTTGCCCACA
 
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JMFF049L23+           ATTTCAGCAACCAAGAATAGTGGAGAACTTTTTATTTCTAAACACCCCGTTTGTAAAGCT
rJMFF049L23-          ATTTCAGCAACCAAGAATAGTGGAGAACTTTTTATTTCTAAACACCCCGTTTGTAAAGCT
JMFS029F11+           ATTTCAGCAACCAAGAATAGTGGAGAACTTTTTATTTCTAAACACCCCGTTTGTAAAGCT
                      ____________________________________________________________
consensus             ATTTCAGCAACCAAGAATAGTGGAGAACTTTTTATTTCTAAACACCCCGTTTGTAAAGCT
 
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JMFF049L23+           ACCAGAGAGAAGACGGAAGCTAATCGGAGGAAGGAGCAGAGAGCATCTCCACGAGCTTCT
rJMFF049L23-          ACCAGAGAGAAGACGGAAGCTAATCGGAGGAAGGAGCAGAGAGCATCTCCACGAGCTTCT
JMFS029F11+           ACCAGAGAGAAGACGGAAGCTAATCGGAGGAAGGAGCAGAGAGCATCTCCACGAGCTTCT
                      ____________________________________________________________
consensus             ACCAGAGAGAAGACGGAAGCTAATCGGAGGAAGGAGCAGAGAGCATCTCCACGAGCTTCT
 
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JMFF049L23+           TGTCCCGCCTTTCCATCGCTACATCCCACACGTCATTCCCGATGTGCTTAGGCCGGCCAT
rJMFF049L23-          TGTCCCGCCTTTCCATCGCTACATCCCACACGTCATTCCCGATGTGCTTAGGCCGGCCAT
JMFS029F11+           TGTCCCGCCTTTCCATCGCTACATCCCACACGTCATTCCCGATGTGCTTAGGCCGGCCAT
                      ____________________________________________________________
consensus             TGTCCCGCCTTTCCATCGCTACATCCCACACGTCATTCCCGATGTGCTTAGGCCGGCCAT
 
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JMFF049L23+           GGTAGGCTTTGTGGACAAAGTATTGGATATTGCCGGCAACGCAAAGCATACCGGCGATAA
rJMFF049L23-          GGTAGGCTTTGTGGACAAAGTATTGGATATTGCCGGCAACGCAAAGCATACCGGCGATAA
JMFS029F11+           GGTAGGCTTTGTGGACAAAGTATTGGATATTGCCGGCAACGCAAAGCATACCGGCGATAA
                      ____________________________________________________________
consensus             GGTAGGCTTTGTGGACAAAGTATTGGATATTGCCGGCAACGCAAAGCATACCGGCGATAA
 
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JMFF049L23+           TTCCCAACGGCAG                                               
rJMFF049L23-          TTCCCAACGGCAG                                               
JMFS029F11+           TTCCCAACGGCAGCGCCGCCTCCAACCAAACAAGCGCCATTTCCTCAGCCTTCGGTTTCC
                      ____________________________________________________________
consensus             TTCCCAACGGCAGCGCCGCCTCCAACCAAACAAGCGCCATTTCCTCAGCCTTCGGTTTCC
 
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JMFS029F11+           CCCCTCGAGTTTTCCAGTACCAGTTCGAAAACGCACAGCAAATCAGCAGAGACGAATTGA
                      ____________________________________________________________
consensus             CCCCTCGAGTTTTCCAGTACCAGTTCGAAAACGCACAGCAAATCAGCAGAGACGAATTGA