| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021F15 | Sequence | 582 | 011747 (9) | ref|XP_009607641.1| | 6e-40 | PREDICTED: exosome complex exonuclease RRP44 [Nicotiana tomentosiformis] | 732 | 011747 (9) | gb|KCW59892.1| | 4e-31 | hypothetical protein EUGRSUZ_H026192, partial [Eucalyptus grandis] |
| JMFS010E10 | Sequence | 632 | 011747 (9) | ref|XP_002276939.1| | 6e-105 | PREDICTED: exosome complex exonuclease RRP44 [Vitis vinifera] emb|CBI21569.3| un | |||||
| JMFS023G05 | Sequence | 572 | 011747 (9) | ref|XP_002276939.1| | 3e-69 | PREDICTED: exosome complex exonuclease RRP44 [Vitis vinifera] emb|CBI21569.3| un | |||||
| JMFS086G01 | Sequence | 615 | 011747 (9) | ref|XP_002276939.1| | 4e-101 | PREDICTED: exosome complex exonuclease RRP44 [Vitis vinifera] emb|CBI21569.3| un | |||||
| JMSF002O23 | Sequence | 348 | 002396 (7) | 707 | 011747 (9) | gb|KCW59892.1| | 4e-31 | hypothetical protein EUGRSUZ_H026192, partial [Eucalyptus grandis] | |||
| JMSF010F10 | Sequence | 441 | 011747 (9) | ref|XP_011096968.1| | 3e-50 | PREDICTED: exosome complex exonuclease RRP44 [Sesamum indicum] | 769 | 023456 | ref|XP_004165807.1| | 3e-72 | PREDICTED: probable exosome complex exonuclease RRP44-like, partial [Cucumis sa |
| JMSF016K14 | Sequence | 200 | 002396 (7) | 776 | 011747 (9) | ref|XP_009607641.1| | 1e-34 | PREDICTED: exosome complex exonuclease RRP44 [Nicotiana tomentosiformis] | |||
| JMSF052B07 | Sequence | 686 | 013584 (8) | ref|XP_010091959.1| | 2e-81 | PHD finger protein ALFIN-LIKE 5 [Morus notabilis] gb|EXB48289.1| PHD finger prot | 903 | 011747 (9) | ref|XP_002276939.1| | 1e-40 | PREDICTED: exosome complex exonuclease RRP44 [Vitis vinifera] emb|CBI21569.3| un |
This contig is upended
. : . : . : . : . : . :
rJMFF021F15- AAATCCTCATACTTTA
____________________________________________________________
consensus AAATCCTCATACTTTA
. : . : . : . : . : . :
rJMFF021F15- ATACAATAATATCATCAAAACATATGAATTTTGTCTACAAGAGGTAAACTTGCCAAAAAA
rJMSF016K14- CATATGAATTTTGTCTACAAGAGGTAAACTTGCCAAAAAA
rJMSF002O23- TAATATCATCAAAACATATGAATTTTGTCTACAAGAGGTAAACTTGCCAAAAAA
rJMSF052B07- ATAATATCATCAAAACATATGAATTTTGTCTACAAGAGGTAAACTTGCCAAAAAA
____________________________________________________________
consensus ATACAATAATATCATCAAAACATATGAATTTTGTCTACAAGAGGTAAACTTGCCAAAAAA
. : . : . : . : . : . :
rJMFF021F15- TATATTTTCTTGAGCATTGGAAAAGAACTAATAGCAGAAACAAGCTCGCCTACATACACG
rJMSF016K14- TATATTTTCTTGAGCATTGGAAAAGAACTAATAGCAGAAACAAGCTCGCCTACATACACG
rJMSF002O23- TATATTTTCTTGAGCATTGGAAAAGAACTAATAGCAGAAACAAGCTCGCCTACATACACG
rJMSF052B07- TATATTTTCTTGAGCATTGGAAAAGAACTAATAGCAGAAACAAGCTCGCCTACATACACG
____________________________________________________________
consensus TATATTTTCTTGAGCATTGGAAAAGAACTAATAGCAGAAACAAGCTCGCCTACATACACG
. : . : . : . : . : . :
rJMFF021F15- TCTTCGCTGGAGTACTGGCAGTACTTGGCCCAAATAGTAATCCGGTTCTGACTTCCTTGG
rJMSF016K14- TCTTCGCTGGAGTACTGGCAGTACTTGGCCCAAATAGTAATCCGGTTCTGACTTCCTTGG
rJMSF002O23- TCTTCGCTGGAGTACTGGCAGTACTTGGCCCAAATAGTAATCCGGTTCTGACTTCCTTGG
rJMSF052B07- TCTTCGCTGGAGTACTGGCAGTACTTGGCCCAAATAGTAATCCGGTTCTGACTTCCTTGG
____________________________________________________________
consensus TCTTCGCTGGAGTACTGGCAGTACTTGGCCCAAATAGTAATCCGGTTCTGACTTCCTTGG
. : . : . : . : . : . :
rJMFF021F15- AACACGCATTGTATACGAGGGTTTCTCCATTGATGTCATGACCTTCTCCTTGCAAGTAAG
rJMSF016K14- AACACGCATTGTATACGAGGGTTTCTCCATTGATGTCATGACCTTCTCCTTGCAAGTAAG
rJMSF002O23- AACACGCATTGTATACGAGGGTTTCTCCATTGATGTCATGACCTTCTCCTTGCAAGTAAG
JMFF021F15+ CAAGTAAG
rJMSF052B07- AACACGCATTGTATACGAGGGTTTCTCCATTGATGTCATGACCTTCTCCTTGCAAGTAAG
____________________________________________________________
consensus AACACGCATTGTATACGAGGGTTTCTCCATTGATGTCATGACCTTCTCCTTGCAAGTAAG
. : . : . : . : . : . :
rJMFF021F15- GAAATGTTCAGTGCTCCTCGATATATAGTTGTCCAATGGAACCAATATGTTTGGGAAATA
rJMSF016K14- GAAATGTTCAGTGCTCCTCGATATATAGTTGTCCAATGGAACCAATATGTTTGGGAAATA
rJMSF002O23- GAAATGTTCAGTGCTCCTCGATATATAGTTGTCCAATGGAACCAATATGTTTGGGAAATA
JMFF021F15+ GAAATGTTCAGTGCTCCTCGATATATAGTTGTCCAATGGAACCAATATGTTTGGGAAATA
rJMSF052B07- GAAATGTTCAGTGCTCCTCGATATATAGTTGTCCAATGGAACCAATATGTTTGGGAAATA
____________________________________________________________
consensus GAAATGTTCAGTGCTCCTCGATATATAGTTGTCCAATGGAACCAATATGTTTGGGAAATA
. : . : . : . : . : . :
rJMFF021F15- ATCAATAGCCCAGTCTGCAAGGGCCTCCATCATTAATGGCCAGAGACTCCACATGTTCAT
rJMSF016K14- ATCAATAGCCCAGTCTGCAAGGGCCTCCATCATTAATGGCCAGAGACTCCACATGTTCAT
rJMSF002O23- ATCAATAGCCCAGTCTGCAAGGGCCTCCATCATTAATGGCCAGAGACTCCACATGTTCAT
JMFF021F15+ ATCAATAGCCCAGTCTGCAAGGGCCTCCATCATTAATGGCCAGAGACTCCACATGTTCAT
rJMSF052B07- ATCAATAGCCCAGTCTGCAAGGGCCTCCATCATTAATGGCCAGAGACTCCACATGTTCAT
____________________________________________________________
consensus ATCAATAGCCCAGTCTGCAAGGGCCTCCATCATTAATGGCCAGAGACTCCACATGTTCAT
. : . : . : . : . : . :
rJMFF021F15- TGATATTTTTGGCGAGTAAAATGTCATATAAGAAACAATCTCCAGAACCTCTTCATAGAC
rJMSF016K14- TGATATTTTTGGCGAGTAAAATGTCATATAAGAAACAATCTCCAGAACCTCTTCATAGAC
rJMSF002O23- TGATATTTTTGGCGAGTAAAATGTCATATAAGAAACAATCTCCAGAACCTCTTCATAGAC
JMFF021F15+ TGATATTTTTGGCGAGTAAAATGTCATATAAGAAACAATCTCCAGAACCTCTTCATAGAC
rJMSF052B07- TGATATTTTTGGCGAGTAAAATGTCATATAAGAAACAATCTCCAGAACCTCTTCATAGAC
____________________________________________________________
consensus TGATATTTTTGGCGAGTAAAATGTCATATAAGAAACAATCTCCAGAACCTCTTCATAGAC
. : . : . : . : . : . :
rJMFF021F15- ATCTCTCAAAGGTTGGTATTTGACAGCAGCTTTAGACTCCATTTATGGAATTCCCTGTCA
rJMSF016K14- ATCTCTCAAAGGTTGGTATTTGACAGCAGCTTTAGACTCCATTTATGGAATTCCCTGTCA
rJMSF002O23- ATCTCTCAAAGGTTGGTATTTGACAGCAGCTTTAGACTCCATTTATGGAATTCCCTGTCA
JMFF021F15+ ATCTCTCAAAGGTTGGTATTTGACAGCAGCTTTAGACTCCATTTATGGAATTCCCTGTCA
JMFS010E10+ CTGTCA
rJMSF052B07- ATCTCTCAAAGGTTGGTATTTGACAGCAGCTTTAGACTCCATTTATGGAATTCCCTGTCA
JMFS086G01+ CTGTCA
JMFS023G05+ CTGTCA
____________________________________________________________
consensus ATCTCTCAAAGGTTGGTATTTGACAGCAGCTTTAGACTCCATTTATGGAATTCCCTGTCA
. : . : . : . : . : . :
rJMFF021F15- TTACGATCATTTGGACTTTCACCAGGCATGGCCTTCACATATGTATCCTTATGGTACTCA
rJMSF016K14- TTACGATCATTTGGACTTTCACCAGGCATGGCCTTCACATATGTATCCTTATGGTACTCA
rJMSF002O23- TTACGATCATTTGGACTTTCACCAGGCATGGCCTTCACATATGTATCCTTATGGTACTCA
JMFF021F15+ TTACGATCATTTGGACTTTCACCAGGCATGGCCTTCACATATGTATCCTTATGGTACTCA
JMFS010E10+ TTACGATCATTTGGACTTTCACCAGGCATGGCCTTCACATATGTATCCTTATGGTACTCA
rJMSF052B07- TTACGATCATTTGGACTTTCACCAGGCATGGCCTTCACATATGTATCCTTATGGTACTCA
JMFS086G01+ TTACGATCATTTGGACTTTCACCAGGCATGGCCTTCACATATGTATCCTTATGGTACTCA
JMSF010F10+ ATGGTACTCA
JMFS023G05+ TTACGATCATTTGGACTTTCACCAGGCATGGCCTTCACATATGTATCCTTATGGTACTCA
____________________________________________________________
consensus TTACGATCATTTGGACTTTCACCAGGCATGGCCTTCACATATGTATCCTTATGGTACTCA
. : . : . : . : . : . :
rJMFF021F15- TTGGAAAAGACAAAGAACTTCCTGAGAGAATTGCTACATAGGGCTCTAAGTCTATTATAA
rJMSF016K14- TTGGAAAAGACAAAGAACTTCCTGAGAGAATTGCTACATAGGGCTCTAAGTCTATTATAA
rJMSF002O23- TTGGAAAAGACAAAGAACTTCCTGAGAGAATTGCTACATAGGGCTCTAAGTCTATTATAA
JMFF021F15+ TTGGAAAAGACAAAGAACTTCCTGAGAGAATTGCTACATAGGGCTCTAAGTCTATTATAA
JMFS010E10+ TTGGAAAAGACAAAGAACTTCCTGAGAGAATTGCTACATAGAGCTCTAAGTCTATTATAA
rJMSF052B07- TTGGAAAAGACAAAGAACTTCCTGAGAGAATTGCTACATAGGGCTCTAAGTCTATTATAA
JMFS086G01+ TTGGAAAAGACAAAGAACTTCCTGAGAGAATTGCTACATAGAGCTCTAAGTCTATTATAA
JMSF010F10+ TTGGAAAAGACAAAGAACTTCCTGAGAGAATTGCTACATAGAGCTCTAAGTCTATTATAA
JMFS023G05+ TTGGAAAAGACAAAGAACTTCCTGAGAGAATTGCTACATAGAGCTCTAAGTCTATTATAA
____________________________________________________________
consensus TTGGAAAAGACAAAGAACTTCCTGAGAGAATTGCTACATAGGGCTCTAAGTCTATTATAA
. : . : . : . : . : . :
rJMFF021F15- ACAGAAATGTTCTTGTTCTTCACCTCCTCCAATACCACCGATAGCACCACCACATTATCA
rJMSF016K14- ACAGAAATGTTCTTGTTCTTCACCTCCTCCAATACCACCGATAGCACCACCACATTATCA
rJMSF002O23- ACAGAAATGTTCTTGTTCTTCACCTCCTCCAATACCACCGATAGCACCACCACATTATCA
JMFF021F15+ ACAGAAATGTTCTTGTTCTTCACCTCCTCCAATACCACCGATAGCACCACCACATTATCA
JMFS010E10+ ACAGAAATGTTCTTGTTCTTCACCTCCTCCAACACCACCGATAGCACCACCACATTATCA
rJMSF052B07- ACAGAAATGTTCTTGTTCTTCACCTCCTCCAATACCACCGATAGCACCACCACATTATCA
JMFS086G01+ ACAGAAATGTTCTTGTTCTTCACCTCCTCCAACACCACCGATAGCACCACCACATTATCA
JMSF010F10+ ACAGAAATGTTCTTGTTNTTCACCTCCTCCAACACCACCGATAGCACCACCACATTATCA
JMFS023G05+ ACAGAAATGTTCTTGTTCTTCACCTCCTCCAACACCACCGATAGCACCACCACATTATCA
____________________________________________________________
consensus ACAGAAATGTTCTTGTTCTTCACCTCCTCCAATACCACCGATAGCACCACCACATTATCA
. : . : . : . : . : . :
rJMFF021F15- ATCGCAGGATTCTCCAGCAAATCAATCTGGTGAAGAACAACATTAGTGTCGACAAC
rJMSF016K14- ATCGCAGGATTCTCCAGCAAATCAATCTGGTGAAGAACAACATTAGTGTCGACAACGAGG
rJMSF002O23- ATCGCAGGATTCTCCAGCAAATCAATCTGGTGAAGAACAACATTAGTGTCGAC
JMFF021F15+ ATCGCAGGATTCTCCAGCAAATCAATCTGGTGAAGAACAACATTAGTGTCGACAACGAGG
JMFS010E10+ ATCGCAGGATTCTCCAGCAAATCAATCTGGTGAAGAACAACATTAGTGTCGACAACGAGG
rJMSF052B07- ATCGCAGGATTCTCCAGCAAATCAATCTGGTGAAGAACAACATTAGTGTCGACAACGAGG
JMFS086G01+ ATCGCAGGATTCTCCAGCAAATCAATCTGGTGAAGAACAACATTAGTGTCGACAACGAGG
JMSF010F10+ ATCGCAGGATTCTCCAGCAAATCAATCTGGTGAAGAACAACATTAGTGTCGACAACGAGG
JMFS023G05+ ATCGCAGGATTCTCCAGCAAATCAATCTGGTGAAGAACAACATTAGTGTCGACAACGAGG
____________________________________________________________
consensus ATCGCAGGATTCTCCAGCAAATCAATCTGGTGAAGAACAACATTAGTGTCGACAACGAGG
. : . : . : . : . : . :
rJMSF016K14- ATACGGGAGGAGCTCAAGCGAGCGGAAGAAACAACGCAACTTTTACAAAATGTGGCTCCG
JMFF021F15+ ATACGGGAGGAGCTCAAGCGAGCGGAAGAAACAACGCAACTTTTACAAAATGTGGCTCCG
JMFS010E10+ ATACGGGAGGAGCTCAAGCGAGCGGTAGAAACATCGCAGGTTTTACAAAACGTGGCTCCG
rJMSF052B07- ATACGGGAGGAGCTCAAGCGAGCGGAAGAAACAACGCAACTTTTACAAAATGTGGCTCCG
JMFS086G01+ ATACGGGAGGAGCTCAAGCGAGCGGTAGAAACATCGCAGGTTTTACAAAACGTGGCTCCG
JMSF010F10+ ATACGGGAGGAGCTCAAGCGAGCGGTAGAAACATCGCAGGTTTTACAAAACGTGGCTCCG
JMFS023G05+ ATACGGGAGGAGCTCAAGCGAGCGGTAGAAACATCGCAGGTTTTACAAAACGTGGCTCCG
____________________________________________________________
consensus ATACGGGAGGAGCTCAAGCGAGCGGTAGAAACATCGCAGGTTTTACAAAATGTGGCTCCG
. : . : . : . : . : . :
rJMSF016K14- CAGTAGATATCATCAC
JMFF021F15+ CAGTAGATATCATCACGGAGATAGTGTTCCCTAA
JMFS010E10+ CAGTAGATATCGTCACGGAGATAGTGTTCCCTAACGACCTTGA
rJMSF052B07- CAGTAGATATCATCACGGAGATAGTGTTCCCTAACGACCTTGA
JMFS086G01+ CAGTAGATATCGTCACGGAGATAGTGTTCCCTAACGACCTTGATTACTTTCCCCTGCTTA
JMSF010F10+ CAGTAGATATCGTCACGGAGATAGTGTTCCCTAACGACCTTGATTACTTTCCCCTGCTTA
JMFS023G05+ CAGTAGATATCGTCACGGAGATAGTGTTCCCTAACGACCTTGATTACTTTCCCCTGCTTA
____________________________________________________________
consensus CAGTAGATATCGTCACGGAGATAGTGTTCCCTAACGACCTTGATTACTTTCCCCTGCTTA
. : . : . : . : . : . :
JMFS086G01+ GTTTTCCGTACGAATGATTTGCTCTGCAGCATTTTCACAGA
JMSF010F10+ GTTTTCCGTACGAATGATTTGCTCTGCAGCATTTTCACAGAGCTGCAGTAATGGCCGACT
JMFS023G05+ GTTTTCCGTACGAATGATTTGCTCTGCAGCATTTTCACAGAGCTGCAGTAATGGCCGACT
____________________________________________________________
consensus GTTTTCCGTACGAATGATTTGCTCTGCAGCATTTTCACAGAGCTGCAGTAATGGCCGACT
. : . : . : . : . : . :
JMSF010F10+ TCCAGAGACAGAGAGTGTTGTGATGGTGGTTCGCGGCCGTTGGGTTTATAAATATTCGGC
JMFS023G05+ TCCAGAGACAGAGAGTGTTGTGATGGTGGTTCGCGGCCGTTGGGTTTATAAATATTCGGC
____________________________________________________________
consensus TCCAGAGACAGAGAGTGTTGTGATGGTGGTTCGCGGCCGTTGGGTTTATAAATATTCGGC
. : . : . : . : . : . :
JMSF010F10+ TCTTTCCGGT
JMFS023G05+ TCTTTCCGGTTGGGCCTGATTCAAAGGGACCCTAGTATCTTTCCCCCCTTCTTTCCCTCG
____________________________________________________________
consensus TCTTTCCGGTTGGGCCTGATTCAAAGGGACCCTAGTATCTTTCCCCCCTTCTTTCCCTCG