Contig 011740:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS016C05Sequence563011740 (4)ref|XP_008236983.1|2e-109PREDICTED: squalene synthase-like [Prunus mume]
JMSF006N23Sequence387011740 (4)gb|AGB05603.1|5e-56squalene synthase [Camellia oleifera]347005858 (3)
JMSF039K01Sequence660011740 (4)ref|XP_008236983.1|4e-111PREDICTED: squalene synthase-like [Prunus mume]855005858 (3)gb|ADW78251.1|3e-90squalene synthase [Withania somnifera] gb|ADO22708.1| squalene synthase [Withani
JMSF053G19Sequence624011740 (4)ref|XP_008236983.1|2e-111PREDICTED: squalene synthase-like [Prunus mume]897005858 (3)gb|ADW78251.1|6e-127squalene synthase [Withania somnifera] gb|ADO22708.1| squalene synthase [Withani

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF053G19+ AC
                      ____________________________________________________________
consensus AC
 
. : . : . : . : . : . :
JMSF053G19+ CTGAGGCATGGAAAAGTTTTGACAACCCTAANCCCAACAAGCCCAGCAACATAATGACAA
JMSF039K01+ CCAACAAGCCCAGCAACATAATGACAA
JMFS016C05+ CAAGCCCAGCAACATAATGACAA
                      ____________________________________________________________
consensus CTGAGGCATGGAAAAGTTTTGACAACCCTAANCCCAACAAGCCCAGCAACATAATGACAA
 
. : . : . : . : . : . :
JMSF053G19+ TATTCATCATAATCATCGACTGTTTCCACCTCCTTGCATATAAATTTTGCCATCCCTGCA
JMSF039K01+ TATTCATCATAATCATCGACTGTTTCCACCTCCTTGCATATAAATTTTGCCATCCCTGCA
JMFS016C05+ TATTCATCATAATCATCGACTGTTTCCACCTCCTTGCATATAAATTTTGCCATCCCTGCA
                      ____________________________________________________________
consensus TATTCATCATAATCATCGACTGTTTCCACCTCCTTGCATATAAATTTTGCCATCCCTGCA
 
. : . : . : . : . : . :
JMSF053G19+ CCCATCCTCTTGGTAATGTCCTCAATTGCCTCCTGATAGTTCTTCCCAAGCTCTAGAAAA
JMSF039K01+ CCCATCCTCTTGGTAATGTCCTCAATTGCCTCCTGATAGTTCTTCCCAAGCTCTAGAAAA
JMFS016C05+ CCCATCCTCTTGGTAATGTCCTCAATTGCCTCCTGATAGTTCTTCCCAAGCTCTAGAAAA
                      ____________________________________________________________
consensus CCCATCCTCTTGGTAATGTCCTCAATTGCCTCCTGATAGTTCTTCCCAAGCTCTAGAAAA
 
. : . : . : . : . : . :
JMSF053G19+ GCAGTAGAAACATGACGGAATTGGTCCATGAGAACTTTATAGTCCTTTGTACCACATGAA
JMSF039K01+ GCAGTAGAAACATGACGGAATTGGTCCATGAGAACTTTATAGTCCTTTGTACCACATGAA
JMFS016C05+ GCAGTAGAAACATGACGGAATTGGTCCATGAGAACTTTATAGTCCTTTGTACCACATGAA
                      ____________________________________________________________
consensus GCAGTAGAAACATGACGGAATTGGTCCATGAGAACTTTATAGTCCTTTGTACCACATGAA
 
. : . : . : . : . : . :
JMSF053G19+ AAATTCCATTCAAGGTCATATATGTGACGATGAAAAGCCATCAAAATAGGTACTTTAACC
JMSF006N23+ TCATATATGTGACGATGAAAAGCCATCAAAATAGGTACTTTAACC
JMSF039K01+ AAATTCCATTCAAGGTCATATATGTGACGATGAAAAGCCATCAAAATAGGTACTTTAACC
JMFS016C05+ AAATTCCATTCAAGGTCATATATGTGACGATGAAAAGCCATCAAAATAGGTACTTTAACC
                      ____________________________________________________________
consensus AAATTCCATTCAAGGTCATATATGTGACGATGAAAAGCCATCAAAATAGGTACTTTAACC
 
. : . : . : . : . : . :
JMSF053G19+ TCTGAAGCAATGCTTGTATCATCCTCAACAGTATCAAGTGCTCTAAGAACCAAATAGAAA
JMSF006N23+ TCTGAAGCAATGCTTGTATCATCCTCAACAGTATCAAGTGCTCTAAGAACCAAATAGAAA
JMSF039K01+ TCTGAAGCAATGCTTGTATCATCCTCAACAGTATCAAGTGCTCTAAGAACCAAATAGAAA
JMFS016C05+ TCTGAAGCAATGCTTGTATCATCCTCAACAGTATCAAGTGCTCTAAGAACCAAATAGAAA
                      ____________________________________________________________
consensus TCTGAAGCAATGCTTGTATCATCCTCAACAGTATCAAGTGCTCTAAGAACCAAATAGAAA
 
. : . : . : . : . : . :
JMSF053G19+ ATGCACACAGCGTCGCGAAGCTCGTTTGGAAGCTGCTGAATGACGAGAGCGAAGCTGCGA
JMSF006N23+ ATGCACACAGCGTCGCGAAGCTCGTTTGGAAGCTGCTGAATGACGAGAGCGAAGCTGCGA
JMSF039K01+ ATGCACACAGCGTCGCGAAGCTCGTTTGGAAGCTGCTGAATGACGAGAGCGAAGCTGCGA
JMFS016C05+ ATGCACACAGCGTCGCGAAGCTCGTTTGGAAGCTGCTGAATGACGAGAGCGAAGCTGCGA
                      ____________________________________________________________
consensus ATGCACACAGCGTCGCGAAGCTCGTTTGGAAGCTGCTGAATGACGAGAGCGAAGCTGCGA
 
. : . : . : . : . : . :
JMSF053G19+ GAGACCTTGCGGAGCATGATGTAGCAGAATCCCCAGTGCGGCTGCGGGGGAATCTGCTTC
JMSF006N23+ GAGACCTTGCGGAGCATGATGTAGCAGAATCCCCAGTGCGGCTGCGGGGGAATCTGCTTC
JMSF039K01+ GAGACCTTGCGGAGCATGATGTAGCAGAATCCCCAGTGCGGCTGCGGGGGAATCTGCTTC
JMFS016C05+ GAGACCTTGCGGAGCATGATGTAGCAGAATCCCCAGTGCGGCTGCGGGGGAATCTGCTTC
                      ____________________________________________________________
consensus GAGACCTTGCGGAGCATGATGTAGCAGAATCCCCAGTGCGGCTGCGGGGGAATCTGCTTC
 
. : . : . : . : . : . :
JMSF053G19+ TCCAGCTGCCTCGCCGCCATTTTCAGCTTTATCAGCGGATACACATCGTCCGGATGCTTC
JMSF006N23+ TCCAGCTGCCTCGCCGCCATTTTCAGCTTTATCAGCGGATACACATCGTCCGGATGCTTC
JMSF039K01+ TCCAGCTGCCTCGCCGCCATTTTCAGCTTTATCAGCGGATACACATCGTCCGGATGCTTC
JMFS016C05+ TCCAGCTGCCTCGCCGCCATTTTCAGCTTTATCAGCGGATACACATCGTCCGGATGCTTC
                      ____________________________________________________________
consensus TCCAGCTGCCTCGCCGCCATTTTCAGCTTTATCAGCGGATACACATCGTCCGGATGCTTC
 
. : . : . : . : . : . :
JMSF053G19+ AACATCGCTCCCAAACTCCCCATT
JMSF006N23+ AACATCGCTCCCAAACTCCCCATT
JMSF039K01+ AACATCGCTCCCAAACTCCCCATT
JMFS016C05+ AACATCGCTCCCAAACTCCCCATTCCTCTTTGACCCGCTTCCTAGCAGAGAAACACGACG
                      ____________________________________________________________
consensus AACATCGCTCCCAAACTCCCCATTCCTCTTTGACCCGCTTCCTAGCAGAGAAACACGACG