| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS016C05 | Sequence | 563 | 011740 (4) | ref|XP_008236983.1| | 2e-109 | PREDICTED: squalene synthase-like [Prunus mume] | |||||
| JMSF006N23 | Sequence | 387 | 011740 (4) | gb|AGB05603.1| | 5e-56 | squalene synthase [Camellia oleifera] | 347 | 005858 (3) | |||
| JMSF039K01 | Sequence | 660 | 011740 (4) | ref|XP_008236983.1| | 4e-111 | PREDICTED: squalene synthase-like [Prunus mume] | 855 | 005858 (3) | gb|ADW78251.1| | 3e-90 | squalene synthase [Withania somnifera] gb|ADO22708.1| squalene synthase [Withani |
| JMSF053G19 | Sequence | 624 | 011740 (4) | ref|XP_008236983.1| | 2e-111 | PREDICTED: squalene synthase-like [Prunus mume] | 897 | 005858 (3) | gb|ADW78251.1| | 6e-127 | squalene synthase [Withania somnifera] gb|ADO22708.1| squalene synthase [Withani |
This contig is upended
. : . : . : . : . : . :
JMSF053G19+ AC
____________________________________________________________
consensus AC
. : . : . : . : . : . :
JMSF053G19+ CTGAGGCATGGAAAAGTTTTGACAACCCTAANCCCAACAAGCCCAGCAACATAATGACAA
JMSF039K01+ CCAACAAGCCCAGCAACATAATGACAA
JMFS016C05+ CAAGCCCAGCAACATAATGACAA
____________________________________________________________
consensus CTGAGGCATGGAAAAGTTTTGACAACCCTAANCCCAACAAGCCCAGCAACATAATGACAA
. : . : . : . : . : . :
JMSF053G19+ TATTCATCATAATCATCGACTGTTTCCACCTCCTTGCATATAAATTTTGCCATCCCTGCA
JMSF039K01+ TATTCATCATAATCATCGACTGTTTCCACCTCCTTGCATATAAATTTTGCCATCCCTGCA
JMFS016C05+ TATTCATCATAATCATCGACTGTTTCCACCTCCTTGCATATAAATTTTGCCATCCCTGCA
____________________________________________________________
consensus TATTCATCATAATCATCGACTGTTTCCACCTCCTTGCATATAAATTTTGCCATCCCTGCA
. : . : . : . : . : . :
JMSF053G19+ CCCATCCTCTTGGTAATGTCCTCAATTGCCTCCTGATAGTTCTTCCCAAGCTCTAGAAAA
JMSF039K01+ CCCATCCTCTTGGTAATGTCCTCAATTGCCTCCTGATAGTTCTTCCCAAGCTCTAGAAAA
JMFS016C05+ CCCATCCTCTTGGTAATGTCCTCAATTGCCTCCTGATAGTTCTTCCCAAGCTCTAGAAAA
____________________________________________________________
consensus CCCATCCTCTTGGTAATGTCCTCAATTGCCTCCTGATAGTTCTTCCCAAGCTCTAGAAAA
. : . : . : . : . : . :
JMSF053G19+ GCAGTAGAAACATGACGGAATTGGTCCATGAGAACTTTATAGTCCTTTGTACCACATGAA
JMSF039K01+ GCAGTAGAAACATGACGGAATTGGTCCATGAGAACTTTATAGTCCTTTGTACCACATGAA
JMFS016C05+ GCAGTAGAAACATGACGGAATTGGTCCATGAGAACTTTATAGTCCTTTGTACCACATGAA
____________________________________________________________
consensus GCAGTAGAAACATGACGGAATTGGTCCATGAGAACTTTATAGTCCTTTGTACCACATGAA
. : . : . : . : . : . :
JMSF053G19+ AAATTCCATTCAAGGTCATATATGTGACGATGAAAAGCCATCAAAATAGGTACTTTAACC
JMSF006N23+ TCATATATGTGACGATGAAAAGCCATCAAAATAGGTACTTTAACC
JMSF039K01+ AAATTCCATTCAAGGTCATATATGTGACGATGAAAAGCCATCAAAATAGGTACTTTAACC
JMFS016C05+ AAATTCCATTCAAGGTCATATATGTGACGATGAAAAGCCATCAAAATAGGTACTTTAACC
____________________________________________________________
consensus AAATTCCATTCAAGGTCATATATGTGACGATGAAAAGCCATCAAAATAGGTACTTTAACC
. : . : . : . : . : . :
JMSF053G19+ TCTGAAGCAATGCTTGTATCATCCTCAACAGTATCAAGTGCTCTAAGAACCAAATAGAAA
JMSF006N23+ TCTGAAGCAATGCTTGTATCATCCTCAACAGTATCAAGTGCTCTAAGAACCAAATAGAAA
JMSF039K01+ TCTGAAGCAATGCTTGTATCATCCTCAACAGTATCAAGTGCTCTAAGAACCAAATAGAAA
JMFS016C05+ TCTGAAGCAATGCTTGTATCATCCTCAACAGTATCAAGTGCTCTAAGAACCAAATAGAAA
____________________________________________________________
consensus TCTGAAGCAATGCTTGTATCATCCTCAACAGTATCAAGTGCTCTAAGAACCAAATAGAAA
. : . : . : . : . : . :
JMSF053G19+ ATGCACACAGCGTCGCGAAGCTCGTTTGGAAGCTGCTGAATGACGAGAGCGAAGCTGCGA
JMSF006N23+ ATGCACACAGCGTCGCGAAGCTCGTTTGGAAGCTGCTGAATGACGAGAGCGAAGCTGCGA
JMSF039K01+ ATGCACACAGCGTCGCGAAGCTCGTTTGGAAGCTGCTGAATGACGAGAGCGAAGCTGCGA
JMFS016C05+ ATGCACACAGCGTCGCGAAGCTCGTTTGGAAGCTGCTGAATGACGAGAGCGAAGCTGCGA
____________________________________________________________
consensus ATGCACACAGCGTCGCGAAGCTCGTTTGGAAGCTGCTGAATGACGAGAGCGAAGCTGCGA
. : . : . : . : . : . :
JMSF053G19+ GAGACCTTGCGGAGCATGATGTAGCAGAATCCCCAGTGCGGCTGCGGGGGAATCTGCTTC
JMSF006N23+ GAGACCTTGCGGAGCATGATGTAGCAGAATCCCCAGTGCGGCTGCGGGGGAATCTGCTTC
JMSF039K01+ GAGACCTTGCGGAGCATGATGTAGCAGAATCCCCAGTGCGGCTGCGGGGGAATCTGCTTC
JMFS016C05+ GAGACCTTGCGGAGCATGATGTAGCAGAATCCCCAGTGCGGCTGCGGGGGAATCTGCTTC
____________________________________________________________
consensus GAGACCTTGCGGAGCATGATGTAGCAGAATCCCCAGTGCGGCTGCGGGGGAATCTGCTTC
. : . : . : . : . : . :
JMSF053G19+ TCCAGCTGCCTCGCCGCCATTTTCAGCTTTATCAGCGGATACACATCGTCCGGATGCTTC
JMSF006N23+ TCCAGCTGCCTCGCCGCCATTTTCAGCTTTATCAGCGGATACACATCGTCCGGATGCTTC
JMSF039K01+ TCCAGCTGCCTCGCCGCCATTTTCAGCTTTATCAGCGGATACACATCGTCCGGATGCTTC
JMFS016C05+ TCCAGCTGCCTCGCCGCCATTTTCAGCTTTATCAGCGGATACACATCGTCCGGATGCTTC
____________________________________________________________
consensus TCCAGCTGCCTCGCCGCCATTTTCAGCTTTATCAGCGGATACACATCGTCCGGATGCTTC
. : . : . : . : . : . :
JMSF053G19+ AACATCGCTCCCAAACTCCCCATT
JMSF006N23+ AACATCGCTCCCAAACTCCCCATT
JMSF039K01+ AACATCGCTCCCAAACTCCCCATT
JMFS016C05+ AACATCGCTCCCAAACTCCCCATTCCTCTTTGACCCGCTTCCTAGCAGAGAAACACGACG
____________________________________________________________
consensus AACATCGCTCCCAAACTCCCCATTCCTCTTTGACCCGCTTCCTAGCAGAGAAACACGACG