Contig 011734:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006C17Sequence576002027 (12)ref|XP_007024078.1|2e-134Coatomer, beta' subunit isoform 6 [Theobroma cacao] gb|EOY26700.1| Coatomer, bet773011734 (2)ref|XP_007024077.1|9e-43Coatomer, beta' subunit isoform 5 [Theobroma cacao] gb|EOY26699.1| Coatomer, bet
JMFS008F07Sequence614011734 (2)ref|XP_009608402.1|4e-93PREDICTED: coatomer subunit beta'-2-like [Nicotiana tomentosiformis] ref|XP_0096

Alignment

This contig is upended


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rJMFF006C17-                                  GGTTAAAATGATCCACCCTATCCGCACTTTTCATAT
                      ____________________________________________________________
consensus                                     GGTTAAAATGATCCACCCTATCCGCACTTTTCATAT
 
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rJMFF006C17-          AACATAATACTTCTACATTCACAATGGCATTTAAGAATTTCAAAGAATATCATACTGTAT
                      ____________________________________________________________
consensus             AACATAATACTTCTACATTCACAATGGCATTTAAGAATTTCAAAGAATATCATACTGTAT
 
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rJMFF006C17-          TAATTAAGACAACTATGGGGGGGCATCTAAGCTACACAGTATTTAATAACTGAAGCTCAA
                      ____________________________________________________________
consensus             TAATTAAGACAACTATGGGGGGGCATCTAAGCTACACAGTATTTAATAACTGAAGCTCAA
 
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rJMFF006C17-          ACAAATGTCGTCTACTGAATGTTGAAAAAACTCATTGCTACAAAATCACACCACAGCCAA
                      ____________________________________________________________
consensus             ACAAATGTCGTCTACTGAATGTTGAAAAAACTCATTGCTACAAAATCACACCACAGCCAA
 
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rJMFF006C17-          GCCAAGCAAACACCCGGTTCCTCTTCACCTTTACCTTTTCAAGACGATTGACGGAGAGTC
                      ____________________________________________________________
consensus             GCCAAGCAAACACCCGGTTCCTCTTCACCTTTACCTTTTCAAGACGATTGACGGAGAGTC
 
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rJMFF006C17-          TTAAGAATGAATTACATACAGCTGGAACCGATTGCATTGACTGGAATCAGGGATGTGTAA
                      ____________________________________________________________
consensus             TTAAGAATGAATTACATACAGCTGGAACCGATTGCATTGACTGGAATCAGGGATGTGTAA
 
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rJMFF006C17-          GCACAGCGACAAAACTACGATTTTCACACCAGCCCAACCAATTGCTTTTAAGCTGACTGT
                      ____________________________________________________________
consensus             GCACAGCGACAAAACTACGATTTTCACACCAGCCCAACCAATTGCTTTTAAGCTGACTGT
 
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rJMFF006C17-          TTTCCTTCATTATTCATACCCCACTCTTCATCAGCATCGTTTCCATTAACAAGCACACCA
                      ____________________________________________________________
consensus             TTTCCTTCATTATTCATACCCCACTCTTCATCAGCATCGTTTCCATTAACAAGCACACCA
 
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rJMFF006C17-          TCTGTTGATTCAGCATCCACCACAACAGCCTCTTCTTGGCCATCTTCATGCCCCTCTGGT
                      ____________________________________________________________
consensus             TCTGTTGATTCAGCATCCACCACAACAGCCTCTTCTTGGCCATCTTCATGCCCCTCTGGT
 
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rJMFF006C17-          TGAATATCATCTTGCTCCGGCTGCTGTCCCTCGCCTTCATTCTGTACTGCAGCCTCATGA
JMFS008F07+                                                               CCTCATGA
                      ____________________________________________________________
consensus             TGAATATCATCTTGCTCCGGCTGCTGTCCCTCGCCTTCATTCTGTACTGCAGCCTCATGA
 
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rJMFF006C17-          TCCAATTCTCCATTTTCAAGGGGTTCCTCTTCATCCATCCTCATATTCCTGAAAGCCTCC
JMFS008F07+           TCCAATTCTCCATTTTCAAGGGGTTCCTCTTCATCCATCCTCATATTCCTGAAAGCCTCC
                      ____________________________________________________________
consensus             TCCAATTCTCCATTTTCAAGGGGTTCCTCTTCATCCATCCTCATATTCCTGAAAGCCTCC
 
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rJMFF006C17-          ACAAGGTTGACTGCAGATCTATCAGCATGATTTAAATATTCGGCTGCTGGTGGGTAGATA
JMFS008F07+           ACAAGGTTGACTGCAGATCTATCAGCATGATTTAAATATTCGGCTGCTGGTGGGTAGATA
                      ____________________________________________________________
consensus             ACAAGGTTGACTGCAGATCTATCAGCATGATTTAAATATTCGGCTGCTGGTGGGTAGATA
 
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rJMFF006C17-          CCTCTGGTCTCTGCAACGCTAGATTCAACAGCAAGTGCAACTTGCCAATCCTCAAACAAG
JMFS008F07+           CCTCTGGTCTCTGCAACGCTAGATTCAACAGCAAGTGCAACTTGCCAATCCTCAAACAAG
                      ____________________________________________________________
consensus             CCTCTGGTCTCTGCAACGCTAGATTCAACAGCAAGTGCAACTTGCCAATCCTCAAACAAG
 
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rJMFF006C17-          TTCGGATATTCTTGA                                             
JMFS008F07+           TTCGGATATTCTTGAGGATCAGCCAAAGCCTCAGCAGCTTTCTGGTTGACCTTGTTAAGG
                      ____________________________________________________________
consensus             TTCGGATATTCTTGAGGATCAGCCAAAGCCTCAGCAGCTTTCTGGTTGACCTTGTTAAGG
 
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JMFS008F07+           TCCTTTCTCCAAATGGAAACTATTTCAGAGACTTTACTGGGTAAATATGATCGTGCCATA
                      ____________________________________________________________
consensus             TCCTTTCTCCAAATGGAAACTATTTCAGAGACTTTACTGGGTAAATATGATCGTGCCATA
 
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JMFS008F07+           AATGCTGCTTCAGGTATACGGCCACTGTCAATCAACAGCTGAATGCACTCATCCACTTTA
                      ____________________________________________________________
consensus             AATGCTGCTTCAGGTATACGGCCACTGTCAATCAACAGCTGAATGCACTCATCCACTTTA
 
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JMFS008F07+           CCCAGCAGAAATAGGCAAAGGAATGAAACATTATTCTTCCCATGCTCCTTGGCAATAGAA
                      ____________________________________________________________
consensus             CCCAGCAGAAATAGGCAAAGGAATGAAACATTATTCTTCCCATGCTCCTTGGCAATAGAA