Contig 011728:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP002A11Sequence557011728 (4)ref|XP_010090326.1|1e-84Actin-depolymerizing factor 5 [Morus notabilis] gb|EXB39296.1| Actin-depolymeriz
JMFN028E02Sequence578011728 (4)ref|XP_010090326.1|8e-86Actin-depolymerizing factor 5 [Morus notabilis] gb|EXB39296.1| Actin-depolymeriz
JMFN041I12Sequence629011728 (4)ref|XP_010090326.1|2e-85Actin-depolymerizing factor 5 [Morus notabilis] gb|EXB39296.1| Actin-depolymeriz
JMFN046B17Sequence647011728 (4)ref|XP_010090326.1|3e-85Actin-depolymerizing factor 5 [Morus notabilis] gb|EXB39296.1| Actin-depolymeriz

Alignment

This contig is upended


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rJMCP002A11+                                       TCTTACAAGAGAATGAAGAAGGAtcatccgG
JMFN046B17+                                                GAGAATGAAGAAGGAAGTAGGCG
                      ____________________________________________________________
consensus                                          TCTTACAAGAGAATGAAGAAGGAAGTAGGCG
 
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rJMCP002A11+          TCACAGatgAGatcggttgttttaatttGAAGAACGAACATTGACACTTAGTGGAGTTAT
JMFN028E02+               AGTACAGTAGCCAACAAANTTAAAGAAGAACGAACATTGACACTTAGTGGAGTTAT
JMFN046B17+           TCACAGTACAGTAGCCAACAAAATTAAAGAAGAACGAACATTGACACTTAGTGGAGTTAT
JMFN041I12+                                          GAACGAACATTGACACTTAGTGGAGTTAT
                      ____________________________________________________________
consensus             TCACAGTACAGTAGCCAACAAAATTAAAGAAGAACGAACATTGACACTTAGTGGAGTTAT
 
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rJMCP002A11+          TATTATTATCGTATATATATAGTGCTTAAAAAAGATGATTTTGACAGCTCTCCTTCATCA
JMFN028E02+           TATTATTATCGTATATATATAGTGCTTAAAAAAGATGATTTTGACAGCTCTCCTTCATCA
JMFN046B17+           TATTATTATCGTATATATATAGTGCTTAAAAAAGATGATTTTGACAGCTCTCCTTCATCA
JMFN041I12+           TATTATTATCGTATATATATAGTGCTTAAAAAAGATGATTTTGACAGCTCTCCTTCATCA
                      ____________________________________________________________
consensus             TATTATTATCGTATATATATAGTGCTTAAAAAAGATGATTTTGACAGCTCTCCTTCATCA
 
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rJMCP002A11+          TTCATCTATTTCACCCTCTCCTGAATCACATCCATCCCCATCTCCGTCGGGTCGGTCGCC
JMFN028E02+           TTCATCTATTTCACCCTCTCCTGAATCACATCCATCCCCATCTCCGTCGGGTCGGTCGCC
JMFN046B17+           TTCATCTATTTCACCCTCTCCTGAATCACATCCATCCCCATCTCCGTCGGGTCGGTCGCC
JMFN041I12+           TTCATCTATTTCACCCTCTCCTGAATCACATCCATCCCCATCTCCGTCGGGTCGGTCGCC
                      ____________________________________________________________
consensus             TTCATCTATTTCACCCTCTCCTGAATCACATCCATCCCCATCTCCGTCGGGTCGGTCGCC
 
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rJMCP002A11+          TGAACTTCGTAGTGAATCCCGTCCAGTGCTCTCCTCAGCCCGTCTTTgcACGTCGCATAC
JMFN028E02+           TGAACTTCGTAGTGAATCCCGTCCAGTGCTCTCCTCAGCCCGTCTTTCGACGTCGCATAC
JMFN046B17+           TGAACTTCGTAGTGAATCCCGTCCAGTGCTCTCCTCAGCCCGTCTTTCGACGTCGCATAC
JMFN041I12+           TGAACTTCGTAGTGAATCCCGTCCAGTGCTCTCCTCAGCCCGTCTTTCGACGTCGCATAC
                      ____________________________________________________________
consensus             TGAACTTCGTAGTGAATCCCGTCCAGTGCTCTCCTCAGCCCGTCTTTCGACGTCGCATAC
 
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rJMCP002A11+          AGAATTTTTGCCCTAATTCTTGATTCCGCCGGTGACCAGGCAATAAAGAAGATCTTGCTT
JMFN028E02+           AGAATTTTTGCCCTAATTCTTGATTCCGCCGGTGACCAGGCAATAAAGAAGATCTTGCTT
JMFN046B17+           AGAATTTTTGCCCTAATTCTTGATTCCGCCGGTGACCAGGCAATAAAGAAGATCTTGCTT
JMFN041I12+           AGAATTTTTGCCCTAATTCTTGATTCCGCCGGTGACCAGGCAATAAAGAAGATCTTGCTT
                      ____________________________________________________________
consensus             AGAATTTTTGCCCTAATTCTTGATTCCGCCGGTGACCAGGCAATAAAGAAGATCTTGCTT
 
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rJMCP002A11+          TTCCGGCAATTATCAACGGTGACGAAGTCGAAATCGAACACCGCGTATCGGCAATCGTCT
JMFN028E02+           TTCCGGCAATTATCAACGGTGACGAAGTCGAAATCGAACACCGCGTATCGGCAATCGTCT
JMFN046B17+           TTCCGGCAATTATCAACGGTGACGAAGTCGAAATCGAACACCGCGTATCGGCAATCGTCT
JMFN041I12+           TTCCGGCAATTATCAACGGTGACGAAGTCGAAATCGAACACCGCGTATCGGCAATCGTCT
                      ____________________________________________________________
consensus             TTCCGGCAATTATCAACGGTGACGAAGTCGAAATCGAACACCGCGTATCGGCAATCGTCT
 
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rJMCP002A11+          TTGGGGAGGGAAGCGGCGAGATCGTCGTAACTTTCTCCGGCACCGCCGACCTTGTCGACG
JMFN028E02+           TTGGGGAGGGAAGCGGCGAGATCGTCGTAACTTTCTCCGGCACCGCCGACCTTGTCGACG
JMFN046B17+           TTGGGGAGGGAAGCGGCGAGATCGTCGTAACTTTCTCCGGCACCGCCGACCTTGTCGACG
JMFN041I12+           TTGGGGAGGGAAGCGGCGAGATCGTCGTAACTTTCTCCGGCACCGCCGACCTTGTCGACG
                      ____________________________________________________________
consensus             TTGGGGAGGGAAGCGGCGAGATCGTCGTAACTTTCTCCGGCACCGCCGACCTTGTCGACG
 
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rJMCP002A11+          GTGACCAGCCTGGACTTCTCGTCAATCTTGAAAACTATGTACCTGTGCACCTTCTTCCAC
JMFN028E02+           GTGACCAGCCTGGACTTCTCGTCAATCTTGAAAACTATGTACCTGTGCACCTTCTTCCAC
JMFN046B17+           GTGACCAGCCTGGACTTCTCGTCAATCTTGAAAACTATGTACCTGTGCACCTTCTTCCAC
JMFN041I12+           GTGACCAGCCTGGACTTCTCGTCAATCTTGAAAACTATGTACCTGTGCACCTTCTTCCAC
                      ____________________________________________________________
consensus             GTGACCAGCCTGGACTTCTCGTCAATCTTGAAAACTATGTACCTGTGCACCTTCTTCCAC
 
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rJMCP002A11+          TTCATCTCCATGAACGAGTTCTTGCATTCATCAGTTACCCACATCC              
JMFN028E02+           TTCATCTCCATGAACGAGTTCTTGCATTCATCAGTTACCCACATCCCCGTAGTCGCCATC
JMFN046B17+           TTCATCTCCATGAACGAGTTCTTGCATTCATCAGTTACCCACATCCCCGTAGTCGCCATC
JMFN041I12+           TTCATCTCCATGAACGAGTTCTTGCATTCATCAGTTACCCACATCCCCGTAGTCGCCATC
                      ____________________________________________________________
consensus             TTCATCTCCATGAACGAGTTCTTGCATTCATCAGTTACCCACATCCCCGTAGTCGCCATC
 
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JMFN028E02+           TTGAAAGCCATAGCCATGGTGGTTGTTGAGTTTTGGGAAGAT                  
JMFN046B17+           TTGAAAGCCATAGCCATGGTGGTTGTTGAGTTTTGGGAAGATAGAAAGGGGACTAATATT
JMFN041I12+           TTGAAAGCCATAGCCATGGTGGTTGTTGAGTTTTGGGAAGATAGAAAGGGGACTAATATT
                      ____________________________________________________________
consensus             TTGAAAGCCATAGCCATGGTGGTTGTTGAGTTTTGGGAAGATAGAAAGGGGACTAATATT
 
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JMFN046B17+           GGCTTGTTTTGAA                                               
JMFN041I12+           GGCTTGTTTTGAAAGATATAAAGAAAAGAAGTGGTGAAATTGAACTCTACTTGCTAAGGA
                      ____________________________________________________________
consensus             GGCTTGTTTTGAAAGATATAAAGAAAAGAAGTGGTGAAATTGAACTCTACTTGCTAAGGA