Contig 011727:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN041G06Sequence631011727 (2)ref|XP_009792156.1|4e-117PREDICTED: probable protein phosphatase 2C 42 isoform X5 [Nicotiana sylvestris]
JMFS155H10Sequence599011727 (2)ref|XP_009792156.1|1e-111PREDICTED: probable protein phosphatase 2C 42 isoform X5 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS155H10+                                                             TGATCAGCCG
                      ____________________________________________________________
consensus                                                               TGATCAGCCG
 
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JMFS155H10+           TTNTGCGCTTCCAGAGTGTGGATGGCTTTTCACAATATCCACGGCCATTTCATTGCTCAA
                      ____________________________________________________________
consensus             TTNTGCGCTTCCAGAGTGTGGATGGCTTTTCACAATATCCACGGCCATTTCATTGCTCAA
 
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JMFS155H10+           GTGCTCCCATAAACCATCAGAAGCGAATATGAGGAAAGAATCGTTAGGGTGTAGAGGATG
                      ____________________________________________________________
consensus             GTGCTCCCATAAACCATCAGAAGCGAATATGAGGAAAGAATCGTTAGGGTGTAGAGGATG
 
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JMFS155H10+           AGTTAAAATGGATGGGGTTGCAGACAAGATTGGCATGTCTATAGGTTCTTGAAGTCTGAA
                      ____________________________________________________________
consensus             AGTTAAAATGGATGGGGTTGCAGACAAGATTGGCATGTCTATAGGTTCTTGAAGTCTGAA
 
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JMFS155H10+           TTTTGCATTTATTGGCTCCCTGTTAAATTGCTGATGTTTCAAGTAAACATCACCAATGGA
JMFN041G06+                                        GCTGATGTTTCAAGTAAACATCACCAATGGA
                      ____________________________________________________________
consensus             TTTTGCATTTATTGGCTCCCTGTTAAATTGCTGATGTTTCAAGTAAACATCACCAATGGA
 
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JMFS155H10+           TCTTGAGATCTGAATTATGCCTTTCACTCTCCAAACCCCATGTTTGAGAACAACGATTTG
JMFN041G06+           TCCTGAGATCTGAATTATGCCTTTCACTCTCCAAACCCCATGTGTGAGAACAACGATTTG
                      ____________________________________________________________
consensus             TCTTGAGATCTGAATTATGCCTTTCACTCTCCAAACCCCATGTTTGAGAACAACGATTTG
 
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JMFS155H10+           GGGATCATTTGGATGTAATGCTTTGAGCTCCTGTCTAACAGCGGCAAGGTTAGCATTATG
JMFN041G06+           GGGATCATTTGGATGTAATGCTTTGAGCTCCTGTCTAACAGCGGCAAGGTTAGCATTATG
                      ____________________________________________________________
consensus             GGGATCATTTGGATGTAATGCTTTGAGCTCCTGTCTAACAGCGGCAAGGTTAGCATTATG
 
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JMFS155H10+           CTCCTCTGACAACGGTATAGCAGCGATTTCCCCGGTACTACCTACCTTCTTCCCCAGCAC
JMFN041G06+           CTCCTCTGACAACGGTATAGCAGCGATTTCCCCGGTACTACCTACCTTCTTCCCCAGCAC
                      ____________________________________________________________
consensus             CTCCTCTGACAACGGTATAGCAGCGATTTCCCCGGTACTACCTACCTTCTTCCCCAGCAC
 
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JMFS155H10+           AACCCGAGAATCTCCGAGACTGGCGATGAAGAGAGTCTGCTGTGATATTACCCCAACTAG
JMFN041G06+           AACCCGAGAATCTCCGAGACTGGCGATGAAGAGAGTCTGCTGTGATATTACCCCAACTAG
                      ____________________________________________________________
consensus             AACCCGAGAATCTCCGAGACTGGCGATGAAGAGAGTCTGCTGTGATATTACCCCAACTAG
 
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JMFS155H10+           GCAGCAGGTACCAACTGTTGCCAGATGAGGTTGAGAATTCCACTTGTCTGAAACAAGGTC
JMFN041G06+           GCAGCAGGTACCAACTGTTGCCAGATGAGGTTGAGAATTCCACTTGTCTGAAACAAGGTC
                      ____________________________________________________________
consensus             GCAGCAGGTACCAACTGTTGCCAGATGAGGTTGAGAATTCCACTTGTCTGAAACAAGGTC
 
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JMFS155H10+           AGTGAATCCCCTCTCAGTCTCCGAGAAAGCTCTTTGGATCATATCAGCA           
JMFN041G06+           AGTGAATCCCCTCTCAGTCTCCGAGAAAGCTCTTTGGATCATATCAGCAGTCACAACGCC
                      ____________________________________________________________
consensus             AGTGAATCCCCTCTCAGTCTCCGAGAAAGCTCTTTGGATCATATCAGCAGTCACAACGCC
 
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JMFN041G06+           GTTCTCTTCAGTTGCTGATATTGCTTGGAGATGTCGAAACAAATTATCGCAGACGTAGCG
                      ____________________________________________________________
consensus             GTTCTCTTCAGTTGCTGATATTGCTTGGAGATGTCGAAACAAATTATCGCAGACGTAGCG
 
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JMFN041G06+           AGCAGCATCAGGGCCACCATGGCCATCATAGACTCCAACGAAGGTCCCGAACCGACCCGA
                      ____________________________________________________________
consensus             AGCAGCATCAGGGCCACCATGGCCATCATAGACTCCAACGAAGGTCCCGAACCGACCCGA
 
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JMFN041G06+           CTCAATCCGGCTCTGATCCTCCAGCACCCGATTCGCCTGCACGACGGCCATCGAGAACTC
                      ____________________________________________________________
consensus             CTCAATCCGGCTCTGATCCTCCAGCACCCGATTCGCCTGCACGACGGCCATCGAGAACTC
 
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JMFN041G06+           CCCGCCCCCGTATCTCCCAACATCGTGATACCACAGCAGCCCGTCCCTCCCAAACGCGCC
                      ____________________________________________________________
consensus             CCCGCCCCCGTATCTCCCAACATCGTGATACCACAGCAGCCCGTCCCTCCCAAACGCGCC