| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP003H08 | Sequence | 609 | 014141 (5) | ref|XP_009602392.1| | 7e-54 | PREDICTED: uncharacterized protein LOC104097528 isoform X1 [Nicotiana tomentosi | 217 | 011725 (10) | |||
| JMFF002N15 | Sequence | 706 | 011725 (10) | ref|XP_009772525.1| | 5e-32 | PREDICTED: ethylene-responsive transcription factor 4 [Nicotiana sylvestris] sp | |||||
| JMFF013A21 | Sequence | 413 | 011725 (10) | ref|XP_009614490.1| | 6e-35 | PREDICTED: ethylene-responsive transcription factor 4-like [Nicotiana tomentosi | 638 | 011725 (10) | ref|XP_009772525.1| | 9e-28 | PREDICTED: ethylene-responsive transcription factor 4 [Nicotiana sylvestris] sp |
| JMFF016F09 | Sequence | 556 | 011725 (10) | ref|XP_006351942.1| | 2e-15 | PREDICTED: ethylene-responsive transcription factor 4-like [Solanum tuberosum] | |||||
| JMFF027J03 | Sequence | 544 | 011725 (10) | dbj|BAJ72664.1| | 2e-54 | ethylene response factor 3 [Nicotiana benthamiana] | 708 | 011725 (10) | ref|XP_009772525.1| | 3e-45 | PREDICTED: ethylene-responsive transcription factor 4 [Nicotiana sylvestris] sp |
| JMFF041L06 | Sequence | 657 | 011725 (10) | dbj|BAJ72664.1| | 5e-55 | ethylene response factor 3 [Nicotiana benthamiana] | 622 | 011725 (10) | ref|XP_009772525.1| | 5e-25 | PREDICTED: ethylene-responsive transcription factor 4 [Nicotiana sylvestris] sp |
| JMFN039E06 | Sequence | 601 | 011725 (10) | ref|XP_009772525.1| | 3e-21 | PREDICTED: ethylene-responsive transcription factor 4 [Nicotiana sylvestris] sp | |||||
This contig is upended
. : . : . : . : . : . :
JMFF041L06- ATCCACCATCACCACATTTTATCTGTATCACTATCAGTGATTGCG
____________________________________________________________
consensus ATCCACCATCACCACATTTTATCTGTATCACTATCAGTGATTGCG
. : . : . : . : . : . :
JMFF041L06- TTAATGGCTGTGAAAGGTGTCGGAGTTAAGGATGGAAGCAGCAGCAGGCACGTGACCGGT
____________________________________________________________
consensus TTAATGGCTGTGAAAGGTGTCGGAGTTAAGGATGGAAGCAGCAGCAGGCACGTGACCGGT
. : . : . : . : . : . :
JMFF027J03- TTAAGGAGGTGCACTTTAGGGGAGTGAGGAAGCGGCCGTGGGGTCGTTACGCCGCCGAA
JMFF013A21- TTAAGGAGGTGCACTTTAGGGGAGTGAGGAAGCGGCCGTGGGGTCGTTACGCCGCCGAA
JMFF041L06- GTTAAGGAGGTGCACTTTAGGGGAGTGAGGAAGCGGCCGTGGGGTCGTTACGCCGCCGAA
rJMFF027J03+ GAA
____________________________________________________________
consensus GTTAAGGAGGTGCACTTTAGGGGAGTGAGGAAGCGGCCGTGGGGTCGTTACGCCGCCGAA
. : . : . : . : . : . :
JMFF027J03- ATCCGCGACCCGGGGAAGAAGAGCCGGGTGTGGTTGGGCACATTTGACACTGCGGAGGAG
JMFF013A21- ATCCGCGACCCGGGGAAGAAGAGCCGGGTGTGGTTGGGCACATTTGACACTGCGGAGGAG
JMFF041L06- ATCCGCGACCCGGGGAAGAAGAGCCGGGTGTGGTTGGGCACATTTGACACTGCGGAGGAG
rJMFF027J03+ ATCCGCGACCCGGGGAAGAAGAGCCGGGTGTGGTTGGGCACATTTGACACTGCGGAGGAG
rJMFF002N15+ CGACCCGGGGAAGAAGAGCCGGGTGTGGTTGGGCACATTTGACACTGCGGAGGAG
____________________________________________________________
consensus ATCCGCGACCCGGGGAAGAAGAGCCGGGTGTGGTTGGGCACATTTGACACTGCGGAGGAG
. : . : . : . : . : . :
JMFF027J03- GCGGCGAGGGCTTATGATGCCGCGGCCAGGCAGTTCCGGGGGCCTAAAGCCAAGACTAAC
JMFF013A21- GCGGCGAGGGCTTATGATGCCGCGGCCAGGCAGTTCCGGGGGCCTAAAGCCAAGACTAAC
JMFF041L06- GCGGCGAGGGCTTATGATGCCGCGGCCAGGCAGTTCCGGGGGCCTAAAGCCAAGACTAAC
rJMFF027J03+ GCGGCGAGGGCTTATGATGCCGCGGCCAGGCAGTTCCGGGGGCCTAAAGCCAAGACTAAC
rJMFF013A21+ AGGGCTTATGATGCCGCGNCCAGGCAGTTCCGGGGGCCTAAAGCCAAGACTAAC
rJMFF002N15+ GCGGCGAGGGCTTATGATGCCGCGGCCAGGCAGTTCCGGGGGCNTAAAGCCAAGACTAAC
rJMFF041L06+ CTAAC
____________________________________________________________
consensus GCGGCGAGGGCTTATGATGCCGCGGCCAGGCAGTTCCGGGGGCCTAAAGCCAAGACTAAC
. : . : . : . : . : . :
JMFF027J03- TTCCCCTTGCCGTCGGAGAATCACAGCCCCAGTCACAGCAGCACCGTGGAGAGCTCCGGA
JMFF013A21- TTCCCCTTGCCGTCGGAGAATCACAGCCCCAGTCACANCANCACCGTGGAGANCTCCNGA
JMFF041L06- TTCCCCTTGCCGTCGGAGAATCACAGCCCCAGTCACAGCAGCACCGTGGAGAGCTCCGGA
rJMFF016F09+ AATCACAGCCCCAGTCACAGCAGCACCGTGGAGAGCTCCGGA
rJMFF027J03+ TTCCCCTTGCCGTCGGAGAATCACAGCCCCAGTCACAGCAGCACCGTGGAGAGCTCCGGA
rJMFF013A21+ TTCCCCTTGCCGTCGGAGAATCACAGCCCCAGTCACAGCAGCACCGTGGAGAGCTCCGGA
rJMFF002N15+ TTCCCCTTGCCGTCGGAGAATCACAGCCCCAGTCACAGCAGCACCGTGGAGAGCTCCGGA
rJMFF041L06+ TTCCCCTGCCCGTCGGAGAATCACAGCCCCAGTCACAGCAGCACCGTGGAGAGCTCCGGA
____________________________________________________________
consensus TTCCCCTTGCCGTCGGAGAATCACAGCCCCAGTCACAGCAGCACCGTGGAGAGCTCCGGA
. : . : . : . : . : . :
JMFF027J03- AGTGAGGCCGGAGCTCACGCGCCCC--AAGCTCCCCGCGAGCTTGATCTCACGCGCCGCC
JMFF013A21- AGTGAGGCCNGANCTCACNCNCCCC--AANCTCCCCNCNANCTTGATCTCAC
JMFF041L06- AGTGAGGCCGGAGCTCACGCGCCCC--AAGCTCCCCGCGAGCTTGATCTCACGCGCCGCC
rJMFF016F09+ AGTGAGGCCGGAGCTCACNCGCCCC--AAGCTCCCCGCGAGCTTGATCTCACGCGCCGCC
rJMFF027J03+ AGTGAGGCCGGAGCTCACGCGCCCC--AAGCTCCCCGCGAGCTTGATCTCACGCGCCGCC
rJMFF013A21+ AGTGAGGCCGGAGCTCACGCGCCCCCAAAGCTCCCCGCGAGCTTGATCTCACGCGCCGCC
rJMFF002N15+ AGTGAGGCCGGAGCTCACGCG-CCCCAAAGCTCCCCGCGAGCTTGATCTCACGCGCCGCC
rJMFF041L06+ AGTGAGGCCGGAGCTCACGCG-CCCC-AAGCTCCCCGCGAGCTTGATCTCACGCGCCGCC
JMFN039E06+ CACGCG-CCCC-AAGCTCCCCGCGAGCTTGATCTCACGCGCCGCC
____________________________________________________________
consensus AGTGAGGCCGGAGCTCACGCGCCCC--AAGCTCCCCGCGAGCTTGATCTCACGCGCCGCC
. : . : . : . : . : . :
JMFF027J03- TCGGTGTCGGTGGGAAGGTCGAGGTTGGATCTGTCAATAACGGGCTTCCGTTTGCCCATA
JMFF041L06- TCGGTGTCGGTGGGAAGGTCGAGGTTGGATCTGTCAATAACGGGCTTCCGTTTGCCCATA
rJMFF016F09+ TCGGTGTCGGTGGGAAGGTCGAGGTTGGATCTGTCAATAACGGGCTTCCGTTTGCCCATA
rJMFF027J03+ TCGGTGTCGGTGGGAAGGTCGAGGTTGGATCTGTCAATAACGGGCTTCCGTTTGCCCATA
rJMFF013A21+ TCGGTGTCGGTGGGAAGGTCGAGGTTGGATCTGTCAATAACAGGCTTCCGTTTGCCCATA
rJMFF002N15+ TCGGTGTCGGTGGGAAGGTCGAGGTTGGATCTGTCAATAACGGGCTTCCGTTTGCCCATA
rJMFF041L06+ TCGGTGTCGGTGGGAAGGTCGAGGTTGGATCTGTCAATAACGGGCTTCCGTTTGCCCATA
JMFN039E06+ TCGGTGTCGGTGGGAAGGTCGAGGTTGGATCTGTCAATAACGGGCTTCCGTTTGCCCATA
____________________________________________________________
consensus TCGGTGTCGGTGGGAAGGTCGAGGTTGGATCTGTCAATAACGGGCTTCCGTTTGCCCATA
. : . : . : . : . : . :
JMFF027J03- AGCAGCCGGCGGTGGCGATTCTGCCAAACGGCCAACCGGTCTTGCTGTTTGACACCGTGT
JMFF041L06- AGCAGCCGGCGGTGGCGATTCTGCCAAACGGCCAACCGGTCTTGCTGTTTGACACCGTGT
rJMFF016F09+ AGCAGCCGGCGGTGGCGATTNTGCCAAACGGCCAACCGGTCTTGCTGTTTGACACCGTGT
rJMFF027J03+ AGCAGCCGGCGGTGGCGATTCTGCCAAACGGCCAACCGGTCTTGCTGTTTGACACCGTGT
rJMFF013A21+ AGCAGCCGGCGGTGGCGATTCTGCCAAACGGCCAACCGGTCTTGCTGTTTGACACCGTGT
rJMFF002N15+ AGCAGCCGGCGGTGGCGATTCTGCCAAACGGCCAACCGGTCTTGCTGTTTGACACCGTGT
rJMFF041L06+ AGCAGCCGGCGGTGGCGATTCTGCCAAACGGCCAACCGGTCTTGCTGTTTGACACCGTGT
JMFN039E06+ AGCAGCCGGCGGTGGCGATTCTGCCAAACGGCCAACCGGTCTTGCTGTTTGACACCGTGT
____________________________________________________________
consensus AGCAGCCGGCGGTGGCGATTCTGCCAAACGGCCAACCGGTCTTGCTGTTTGACACCGTGT
. : . : . : . : . : . :
JMFF027J03- GGCGGCCTGGCATGGTGAACC
JMFF041L06- GGCGGCCTGGCATGGTGAACCAGCAACAGGCGTACCGGTTTGAACCGGTGGCGGTTCTG-
rJMFF016F09+ GNCGNCCTGGCATGGTGAACCAGCAACAGGCGTACCGGTTTGAACCGGTGGCGGTTCTGC
rJMFF027J03+ GGCGGCCTGGCATGGTGAACCAGCAACAGGCGTACCGGTTTGAACCGGTGGCGGTTCTGC
rJMFF013A21+ GGCGGCCTGGCATGGTGAACCAGCAACAGGCGTACCGGTTTGAACCGGTGGCGGTTCTGC
rJMFF002N15+ GGCGGCCTGGCATGGTGAACCAGCAACAGGCGTACCGGTTTGAACCGGTGGCGGTTCTGC
rJMFF041L06+ GGCGGCCTGGCATGGTGAACCAGCAACAGGCGTACCGGTTTGAACCGGTGGCGGTTCTGC
JMFN039E06+ GGCGGCCTGGCATGGTGAACCAGCAACAGGCGTACCGGTTTGAACCGGTGGCGGTTCTGC
____________________________________________________________
consensus GGCGGCCTGGCATGGTGAACCAGCAACAGGCGTACCGGTTTGAACCGGTGGCGGTTCTGC
. : . : . : . : . : . :
JMFF041L06- CCAAATGCGCCGCAGGCGGCGGCGGCGGCGCCCACAGCGACTCCGACTCATCCTCCGTGG
rJMFF016F09+ CCAAATGCGCCGCAGGCGGCGGCGGCGGCGCCCACAGCGACTCNGACTCATCCTCCGTGG
rJMFF027J03+ CCAAATGCGCCGCAGGCGGCGGCGGCGGCGCCCACAGCGACTCCGACTCATCCTCCGTGG
rJMFF013A21+ CCAAATGCGCCGCAGGCGGCGGCGGCGGCGCCCACAGCGACTCCGACTCATCCTCCGTGG
rJMFF002N15+ CCAAATGCGCCGCAGGCGGCGGCGGCGGCGCCCACAGCGACTCCGACTCATCCTCCGTGG
rJMFF041L06+ CCAAATGCGCCGCAGGCGGCGGCGGCGGCGCCCACAGCGACTCCGACTCATCCTCCGTGG
JMFN039E06+ CCAAATGCGCCGCAGGCGGCGGCGGCGGCGCCCACAGCGACTCCGACTCATCCTCCGTGG
____________________________________________________________
consensus CCAAATGCGCCGCAGGCGGCGGCGGCGGCGCCCACAGCGACTCCGACTCATCCTCCGTGG
. : . : . : . : . : . :
JMFF041L06- TGGACGAGAGCCATT
rJMFF016F09+ TGGACGAGANCCATTTCGATCGGCGGGCTTGCCAAGAAAGGCCTGAATCTCGATCTTAAC
rJMFF027J03+ TGGACGAGAGCCATTTCGA-CGGCGGGCTTGCCAAGAAAGGCCTGAATCTCGATCTTAAC
rJMFF013A21+ TGGACGAGAGCCATTTCGA-CGGCGGGCTTGCCAAGAAAGGCCTGAATCTCGATCTTAAC
rJMCP003H08- TCGA-CGGCGGGCTTGCCAAGAAAGGCCTGAATCTCGATCTTAAC
rJMFF002N15+ TGGACGAGAGCCATTTCGA-CGGCGGGCTTGCCAAGAAAGGCCTGAATCTCGATCTTAAC
rJMFF041L06+ TGGACGAGAGCCATTTCGA-CGGCGGGCTTGCCAAGAAAGGCCTGAATCTCGATCTTAAC
JMFN039E06+ TGGACGAGAGCCATTTCGA-CGGCGGGCTTGCCAAGAAAGGCCTGAATCTCGATCTTAAC
____________________________________________________________
consensus TGGACGAGAGCCATTTCGA-CGGCGGGCTTGCCAAGAAAGGCCTGAATCTCGATCTTAAC
. : . : . : . : . : . :
rJMFF016F09+ CTGGCTCCACCCATGGAATCTTAACGAAGAAAAATTGATTTTTGTGAAACTAATTACTTA
rJMFF027J03+ CTGGCTCCACCCATGGAATCTTAACGAAGAAAAATTGATTTTTGTGAAACTAATTACTTA
rJMFF013A21+ CTGGCTCCACCCATGGAATCTTAACGAAGAAAAATTGATTTTTGTGAAACTAATTACTTA
rJMCP003H08- CTGGCTCCACCCATGGAATCTTAACGAAGAAAAATTGATTTTTGTGAAACTAATTACTTA
rJMFF002N15+ CTGGCTCCACCCATGGAATCTTAACGAAGAAAAATTGATTTTTGTGAAACTAATTACTTA
rJMFF041L06+ CTGGCTCCACCCATGGAATCTTAACGAAGAAAAATTGATTTTTGTGAAACTAATTACTTA
JMFN039E06+ CTGGCTCCACCCATGGAATCTTAACGAAGAAAAATTGATTTTTGTGAAACTAATTACTTA
____________________________________________________________
consensus CTGGCTCCACCCATGGAATCTTAACGAAGAAAAATTGATTTTTGTGAAACTAATTACTTA
. : . : . : . : . : . :
rJMFF016F09+ TTTTCCTGTATATAAATCTAGATTCGGATGACTGTTCTTTTTCATGGCTCAGTTATGAGA
rJMFF027J03+ TTTTCCTGTATATAAATCTAGATTCGGATGACTGTTCTTTTTCATGGCTCAGTTATGAGA
rJMFF013A21+ TTTTCCTGTATATAAATCTAGATTCGGATGACTGTTCTTTTTCATGGCTCAGTTATGAGA
rJMCP003H08- TTTTCCTGTATATAAATCTAGATTCGGATGACTGTTCTTTTTCATGGCTCAGTTATGAGA
rJMFF002N15+ TTTTCCTGTATATAAATCTAGATTCGGATGACTGTTCTTTTTCATGGCTCAGTTATGAGA
rJMFF041L06+ TTTTCCTGTATATAAATCTAGATTCGGATGACTGTTCTTTTTCATGGCTCAGTTATGAGA
JMFN039E06+ TTTTCCTGTATATAAATCTAGATTCGGATGACTGTTCTTTTTCATGGCTCAGTTATGAGA
____________________________________________________________
consensus TTTTCCTGTATATAAATCTAGATTCGGATGACTGTTCTTTTTCATGGCTCAGTTATGAGA
. : . : . : . : . : . :
rJMFF016F09+ AATGTNCGCAGCTTTCTCTCGCTGTTTCGCGTTGTA
rJMFF027J03+ AATGT-CGCAGCTTTCTCTCGCTGTTTCGCGTTGTAACTCTTAGGATTT
rJMFF013A21+ AATGT-CGCAGCTTTCTCTCGCTGTTTCGCGTTGTAACTCTTAGGA
rJMCP003H08- AATGT-CGCAGCTTTCTCTCGCTGTTTCGCGTTGTAACTCTTAGGATTTTCTTG
rJMFF002N15+ AATGT-CGCAGCTTTCTCTCGCTGTTTCGCGTTGTAACTCTTAGGATTTTCTTG
rJMFF041L06+ AATGT-CGCAGCTTTCTCTCGCTGTTTCGCGTTGTAACTCTTAGGATTTTCTTGATTCAA
JMFN039E06+ AATGT-CGCAGCTTTCTCTCGCTGTTTCGCGTTGTAACTCTTAGGATTTTCTTGATTCAA
____________________________________________________________
consensus AATGT-CGCAGCTTTCTCTCGCTGTTTCGCGTTGTAACTCTTAGGATTTTCTTGATTCAA
. : . : . : . : . : . :
rJMFF041L06+ TGAAACTGAAAATCTTTTC
JMFN039E06+ TGAAACTGAAAATCTTTTCTCCXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTCTCTC
____________________________________________________________
consensus TGAAACTGAAAATCTTTTCTCCNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTCTCTC