Contig 011723:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF040D21-                                   CAGAAAACACAGGAGACCATATAGCAGTACCAGGN
                      ____________________________________________________________
consensus                                      CAGAAAACACAGGAGACCATATAGCAGTACCAGGN
 
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rJMSF040D21-          TTGGGAAATTAAAATGCAACAACACATCCTTCTACTGAACAACAAACAACTAATCTCTAA
                      ____________________________________________________________
consensus             TTGGGAAATTAAAATGCAACAACACATCCTTCTACTGAACAACAAACAACTAATCTCTAA
 
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rJMSF040D21-          AGAGGTTTAAGATTACATGACTAACTAAACCGTTTATCCAGACCAGATTGATTATATGCA
                      ____________________________________________________________
consensus             AGAGGTTTAAGATTACATGACTAACTAAACCGTTTATCCAGACCAGATTGATTATATGCA
 
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rJMSF040D21-          TGTCCAGGATGGAGTCAACTCAAAACCACAAGGCTGGCTACAGCACTGTCATAGTACAAG
                      ____________________________________________________________
consensus             TGTCCAGGATGGAGTCAACTCAAAACCACAAGGCTGGCTACAGCACTGTCATAGTACAAG
 
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rJMSF040D21-          AAAGGAGCACGGGGCGTCATTGCCTTCTTTCTATGGATGGAGGACATGGACTAAACAGAA
                      ____________________________________________________________
consensus             AAAGGAGCACGGGGCGTCATTGCCTTCTTTCTATGGATGGAGGACATGGACTAAACAGAA
 
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rJMSF040D21-          TGAGGAAAGGAGACGAATATTGACCTACAGATCGAAATGGTCAGGGTCCCATCCAAGATG
                      ____________________________________________________________
consensus             TGAGGAAAGGAGACGAATATTGACCTACAGATCGAAATGGTCAGGGTCCCATCCAAGATG
 
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rJMSF040D21-          AGTTTACCGCTTGGATGGTCTCTCATCATCCTCTCCCCCGTCATCATCAGAATCATCTTT
                      ____________________________________________________________
consensus             AGTTTACCGCTTGGATGGTCTCTCATCATCCTCTCCCCCGTCATCATCAGAATCATCTTT
 
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rJMSF040D21-          GCCCGACCTTTTCCTCTTCGGTGGGGCCTCAACTTTCCCACCAGCATCATCGTCGTCATC
                      ____________________________________________________________
consensus             GCCCGACCTTTTCCTCTTCGGTGGGGCCTCAACTTTCCCACCAGCATCATCGTCGTCATC
 
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rJMSF040D21-          CTCTTCCTCCTCTCCTTCAACGTCATCTTCCTCGCCATTCTCTTCAGGCTCAAAATCACT
                      ____________________________________________________________
consensus             CTCTTCCTCCTCTCCTTCAACGTCATCTTCCTCGCCATTCTCTTCAGGCTCAAAATCACT
 
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rJMSF040D21-          CGTATCTTCCTCATCCTCAGCAGTAGCACATGGCCTGACAAGGTACTCCGTTCCCAGATC
                      ____________________________________________________________
consensus             CGTATCTTCCTCATCCTCAGCAGTAGCACATGGCCTGACAAGGTACTCCGTTCCCAGATC
 
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rJMSF040D21-          CTCCTCCTCTTCTACGCCTTCCTCATCCTCGTCGTCTTCATCGTCGTCATCGTCATCATC
JMFN038L20+             CCTCCTCTTTTACGCCTTCCTCATCCTCGTCGTCTTCATCGTCGTCATCGTCATCATC
                      ____________________________________________________________
consensus             CTCCTCCTCTTTTACGCCTTCCTCATCCTCGTCGTCTTCATCGTCGTCATCGTCATCATC
 
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rJMSF040D21-          GTCGTCGCCTTCATCGTCCTCCTCACCGTCGTCGCCGTCACCATCCTCATCGTCGTCGTC
JMFN038L20+           GTCGTCGCCTTCATCGTCCTCCTCACCGTCGTCGCCGTCACCATCCTCATCGTCGTCGTC
                      ____________________________________________________________
consensus             GTCGTCGCCTTCATCGTCCTCCTCACCGTCGTCGCCGTCACCATCCTCATCGTCGTCGTC
 
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rJMSF040D21-          NTCGTCTACAGTGTGAACCTCCGGAG                                  
JMFN038L20+           GTCGTCTACAGTGTGAACCTCCGGAGCAGCGGAGTTCGGCGGAGCTTCTTGCTCATCCTC
                      ____________________________________________________________
consensus             GTCGTCTACAGTGTGAACCTCCGGAGCAGCGGAGTTCGGCGGAGCTTCTTGCTCATCCTC
 
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JMSF040D21+                                  CTTCGTCATCGTCTTCCCCGTCGTCGTCTTCGCCGCC
JMFN038L20+           ATCATCATCGACGTCGTCTTCGTCTTCGTCATCGTCTTCCCCGTCGTCGTCTTCGCCGCC
                      ____________________________________________________________
consensus             ATCATCATCGACGTCGTCTTCGTCTTCGTCATCGTCTTCCCCGTCGTCGTCTTCGCCGCC
 
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JMSF040D21+           TTCGACTTCCCCCTNGTNGTCCCCGTCGACGACTTCCTCAACTTCCTCCTCGCTCTCCAG
JMFN038L20+           TTCGACTTCCCCCTCGTCGTCCCCGTCGACGACTTCCTCAACTTCCTCCTCGCTCTCCAG
                      ____________________________________________________________
consensus             TTCGACTTCCCCCTCGTCGTCCCCGTCGACGACTTCCTCAACTTCCTCCTCGCTCTCCAG
 
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JMSF040D21+           CTCTTCCAAGCTCCTCTCTTTCTCATAAACAGCCATTTTTTCCAGGAATTTGCAAGGAAA
JMFN038L20+           CTCTTCCAAGCTCCTCTCTTTCTCATAAACAGCCATTTTTTCCAGGAATTTGCAAGGAAA
                      ____________________________________________________________
consensus             CTCTTCCAAGCTCCTCTCTTTCTCATAAACAGCCATTTTTTCCAGGAATTTGCAAGGAAA
 
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JMSF040D21+           AATTCAGGAAAATTTTNGCAGGAAAATTAAATTAAATTTC                    
JMFN038L20+           AATTCAGGAAAATTTTCGCAGGAAAATTAAATTAAATTTCAGAATTTTTCGAGGAAGAGA
                      ____________________________________________________________
consensus             AATTCAGGAAAATTTTCGCAGGAAAATTAAATTAAATTTCAGAATTTTTCGAGGAAGAGA
 
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JMFN038L20+           GAGGGGAATAGAGCAGCTTGTTCGTTCTTCAGAGTAGCAATGCAGGCCGATAGATCTCAG
                      ____________________________________________________________
consensus             GAGGGGAATAGAGCAGCTTGTTCGTTCTTCAGAGTAGCAATGCAGGCCGATAGATCTCAG
 
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JMFN038L20+           CCGTTGGAATTTCGGAATGAACCGGATCGATGACGTGGCGTATCATCGGACGGTGGAAGT
                      ____________________________________________________________
consensus             CCGTTGGAATTTCGGAATGAACCGGATCGATGACGTGGCGTATCATCGGACGGTGGAAGT