| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN004L24 | Sequence | 543 | 011718 (7) | ref|NP_001117356.1| | 5e-43 | protein SPIRAL1-like1 [Arabidopsis thaliana] sp|B3H4F1.1|SP1L1_ARATH RecName: Fu | |||||
| JMFN008L09 | Sequence | 566 | 011718 (7) | ref|NP_001117356.1| | 3e-43 | protein SPIRAL1-like1 [Arabidopsis thaliana] sp|B3H4F1.1|SP1L1_ARATH RecName: Fu | |||||
| JMFN019J05 | Sequence | 538 | 011718 (7) | ref|NP_001117356.1| | 1e-43 | protein SPIRAL1-like1 [Arabidopsis thaliana] sp|B3H4F1.1|SP1L1_ARATH RecName: Fu | |||||
| JMFN028N21 | Sequence | 546 | 011718 (7) | ref|NP_001117356.1| | 2e-43 | protein SPIRAL1-like1 [Arabidopsis thaliana] sp|B3H4F1.1|SP1L1_ARATH RecName: Fu | |||||
| JMFN035J10 | Sequence | 501 | 011718 (7) | ref|NP_001117356.1| | 2e-43 | protein SPIRAL1-like1 [Arabidopsis thaliana] sp|B3H4F1.1|SP1L1_ARATH RecName: Fu | |||||
| JMFN042A08 | Sequence | 545 | 011718 (7) | ref|NP_001117356.1| | 2e-43 | protein SPIRAL1-like1 [Arabidopsis thaliana] sp|B3H4F1.1|SP1L1_ARATH RecName: Fu | |||||
| JMFN043I24 | Sequence | 550 | 011718 (7) | ref|NP_001117356.1| | 2e-43 | protein SPIRAL1-like1 [Arabidopsis thaliana] sp|B3H4F1.1|SP1L1_ARATH RecName: Fu | |||||
This contig is upended
. : . : . : . : . : . :
JMFN019J05+ AAGAGATATGCAAATATTATATATGGAAAGATCAT
JMFN004L24+ AAGAGATATGCAAATATTATATATGGAAAGATCAT
JMFN028N21+ GAGATATGCAAATATTATATATGGAAAGATCAT
JMFN042A08+ AAGAGATATGCAAATATTATATATGGAAAGATCAT
JMFN008L09+ AAGAGATATGCAAATATTATATATGGAAAGATCAT
JMFN043I24+ ATGGAAAGATCAT
____________________________________________________________
consensus AAGAGATATGCAAATATTATATATGGAAAGATCAT
. : . : . : . : . : . :
JMFN019J05+ CAACAATTTGTCGATTTACAACAGGAAATTCACACTGCCAAACCAAGAATCAAGTTATTG
JMFN004L24+ CAACAATTTGTCGATTTACAACAGGAAATTCACACTGCCAAACCAAGAATCAAGTTATTG
JMFN028N21+ CAACAATTTGTCGATTTACAACAGGAAATTCACACTGCCAAACCAAGAATCAAGTTATTG
JMFN042A08+ CAACAATTTGTCGATTTACAACAGGAAATTCACACTGCCAAACCAAGAATCAAGTTATTG
JMFN008L09+ CAACAATTTGTCGATTTACAACAGGAAATTCACACTGCCAAACCAAGAATCAAGTTATTG
JMFN043I24+ CAACAATTTGTCGATTTACAACAGGAAATTCACACTGCCAAACCAAGAATCAAGTTATTG
JMFN035J10+ AAACCAAGAATCAAGTTATTG
____________________________________________________________
consensus CAACAATTTGTCGATTTACAACAGGAAATTCACACTGCCAAACCAAGAATCAAGTTATTG
. : . : . : . : . : . :
JMFN019J05+ ACAATT-CAAATTTTGGATTGTCTAAAGTACAAATAGGTAGAAATTGGCATCTTAGAAAT
JMFN004L24+ ACAATT-CAAATTTTGGATTGTCTAAAGTACAAATAGGTAGAAATTGGCATCTTAGAAAT
JMFN028N21+ ACAATT-CAAATTTTGGATTGTCTAAAGTACAAATAGGTAGAAATTGGCATCTTAGAAAT
JMFN042A08+ ACAATT-CAAATTTTGGATTGTCTAAAGTACAAATAGGTAGAAATTGGCATCTTAGAAAT
JMFN008L09+ ACAATT-CAAATTTTGGATTGTCTAAAGTACAAATAGGTAGAAATTGGCATCTTAGAAAT
JMFN043I24+ ACAATT-CAAATTTTGGATTGTCTAAAGTACAAATAGGTAGAAATTGGCATCTTAGAAAT
JMFN035J10+ ACAATTGCAAATTTTGGATTGTCTAAAGTACAAATAGGTAGAAATTGGCATGTTAGAAAT
____________________________________________________________
consensus ACAATT-CAAATTTTGGATTGTCTAAAGTACAAATAGGTAGAAATTGGCATCTTAGAAAT
. : . : . : . : . : . :
JMFN019J05+ GAACTAGGCACTACTTGCTGCTGCCACTACCTCCAAACAGGTAATCCAGGGAGGACCCTC
JMFN004L24+ GAACTAGGCACTACTTGCTGCTGCCAATACCTCCAAACAGGTAATCCAGGGAGGACCCTC
JMFN028N21+ GAACTAGGCACTACTTGCTGCTGCCACTACCTCCAAACAGGTAATCCAGGGAGGACCCTC
JMFN042A08+ GAACTAGGCACTACTTGCTGCTGCCACTACCTCCAAACAGGTAATCCAGGGAGGACCCTC
JMFN008L09+ GAACTAGGCACTACTTGCTGCTGCCACTACCTCCAAACAGGTAATCCAGGGAGGACCCTC
JMFN043I24+ GAACTAGGCACTACTTGCTGCTGCCACTACCTCCAAACAGGTAATCCAGGGAGGACCCTC
JMFN035J10+ GAACTAGGCACTACTTGCTGCTGCCACTACCTCCAAACAGGTAATCCAGGGAGGACCCTC
____________________________________________________________
consensus GAACTAGGCACTACTTGCTGCTGCCACTACCTCCAAACAGGTAATCCAGGGAGGACCCTC
. : . : . : . : . : . :
JMFN019J05+ CACCTGGTGCAGCATGGACCTTGGTTGAAGGACGATCCGTAAGGAAGTTCCCACAGTTCT
JMFN004L24+ CACCTGGTGCAGCATGGACCTTGGTTGAAGGACGATCCGTAAGGAAGTTCCCACAGTTCT
JMFN028N21+ CACCTGGTGCAGCATGGACCTTGGTTGAAGGACGATCCGTAAGGAAGTTCCCACAGTTCT
JMFN042A08+ CACCTGGTGCAGCATGGACCTTGGTTGAAGGACGATCCGTAAGGAAGTTCCCACAGTTCT
JMFN008L09+ CACCTGGTGCAGCATGGACCTTGGTTGAAGGACGATCCGTAAGGAAGTTCCCACAGTTCT
JMFN043I24+ CACCTGGTGCAGCATGGACCTTGGTTGAAGGACGATCCGTAAGGAAGTTCCCACAGTTCT
JMFN035J10+ CACCTGGTGCAGCATGGACCTTGGTTGAAGGACGATCCGTAAGGAAGTTCCCACAGTTCT
____________________________________________________________
consensus CACCTGGTGCAGCATGGACCTTGGTTGAAGGACGATCCGTAAGGAAGTTCCCACAGTTCT
. : . : . : . : . : . :
JMFN019J05+ GACCATCAGCGCGGAAGTAGTTATTTATTTTGCTCCCGGGTACCCCAGCTGGTATCTGTT
JMFN004L24+ GACCATCAGCGCGGAAGTAGTTATTTATTTTGCTCCCGGGTACCCCAGCTGGTATCTGTT
JMFN028N21+ GACCATCAGCGCGGAAGTAGTTATTTATTTTGCTCCCGGGTACCCCAGCTGGTATCTGTT
JMFN042A08+ GACCATCAGCGCGGAAGTAGTTATTTATTTTGCTCCCGGGTACCCCAGCTGGTATCTGTT
JMFN008L09+ GACCATCAGCGCGGAAGTAGTTATTTATTTTGCTCCCGGGTACCCCAGCTGGTATCTGTT
JMFN043I24+ GACCATCAGCGCGGAAGTAGTTATTTATTTTGCTCCCGGGTACCCCAGCTGGTATCTGTT
JMFN035J10+ GACCATCAGCGCGGAAGTAGTTATTTATTTTGCTCCCGGGTACCCCAGCTGGTATCTGTT
____________________________________________________________
consensus GACCATCAGCGCGGAAGTAGTTATTTATTTTGCTCCCGGGTACCCCAGCTGGTATCTGTT
. : . : . : . : . : . :
JMFN019J05+ TGGTAGCATCTGCAGGTGCAACCGATTTCTGTGGAGTTCCAGCACTAACAGCTGGCCCCT
JMFN004L24+ TGGTAGCATCTGCAGGTGCAACCGATTTCTGTGGAGTTCCAGCACTAACAGCTGGCCCCT
JMFN028N21+ TGGTAGCATCTGCAGGTGCAACCGATTTCTGTGGAGTTCCAGCACTAACAGCTGGCCCCT
JMFN042A08+ TGGTAGCATCTGCAGGTGCAACCGATTTCTGTGGAGTTCCAGCACTAACAGCTGGCCCCT
JMFN008L09+ TGGTAGCATCTGCAGGTGCAACCGATTTCTGTGGAGTTCCAGCACTAACAGCTGGCCCCT
JMFN043I24+ TGGTAGCATCTGCAGGTGCAACCGATTTCTGTGGAGTTCCAGCACTAACAGCTGGCCCCT
JMFN035J10+ TGGTAGCATCTGCAGGTGCAACCGATTTCTGTGGAGTTCCAGCACTAACAGCTGGCCCCT
____________________________________________________________
consensus TGGTAGCATCTGCAGGTGCAACCGATTTCTGTGGAGTTCCAGCACTAACAGCTGGCCCCT
. : . : . : . : . : . :
JMFN019J05+ GATTCAGAGGAGCCTCAGCATTGTTAATAGTAGGCTTTGGAGGCTCACCACTACCAAAAA
JMFN004L24+ GATTCAGAGGAGCCTCAGCATTGTTAATAGTAGGCTTTGGAGGCTCACCACTACCAAAAA
JMFN028N21+ GATTCAGAGGAGCCTCAGCATTGTTAATAGTAGGCTTTGGAGGCTCACCACTACCAAAAA
JMFN042A08+ GATTCAGAGGAGCCTCAGCATTGTTAATAGTAGGCTTTGGAGGCTCACCACTACCAAAAA
JMFN008L09+ GATTCAGAGGAGCCTCAGCATTGTTAATAGTAGGCTTTGGAGGCTCACCACTACCAAAAA
JMFN043I24+ GATTCAGAGGAGCCTCAGCATTGTTAATAGTAGGCTTTGGAGGCTCACCACTACCAAAAA
JMFN035J10+ GATTCAGAGGAGCCTCAGCATTGTTAATAGTAGGCTTTGGAGGCTCACCACTACCAAAAA
____________________________________________________________
consensus GATTCAGAGGAGCCTCAGCATTGTTAATAGTAGGCTTTGGAGGCTCACCACTACCAAAAA
. : . : . : . : . : . :
JMFN019J05+ GATAGCCAAGAGAACTCTGCCCCCCACCAAAACTGACTCCACGACCCATGATCCCCTGGC
JMFN004L24+ GATAGCCAAGAGAACTCTGCCCCCCACCAAAACTGACTCCACGACCCATGATCCCCTGGC
JMFN028N21+ GATAGCCAAGAGAACTCTGCCCCCCACCAAAACTGACTCCACGACCCATGATCCCCTGGC
JMFN042A08+ GATAGCCAAGAGAACTCTGCCCCCCACCAAAACTGACTCCACGACCCATGATCCCCTGGC
JMFN008L09+ GATAGCCAAGAGAACTCTGCCCCCCACCAAAACTGACTCCACGACCCATGATCCCCTGGC
JMFN043I24+ GATAGCCAAGAGAACTCTGCCCCCCACCAAAACTGACTCCACGACCCATGATCCCCTGGC
JMFN035J10+ GATAGCCAAGAGAACTCTGCCCCCCACCAAAACTGACTCCACGACCCATGATCCCCTGGC
____________________________________________________________
consensus GATAGCCAAGAGAACTCTGCCCCCCACCAAAACTGACTCCACGACCCATGATCCCCTGGC
. : . : . : . : . : . :
JMFN019J05+ TTGAGT-GCAAACTTCTTTGTTTAA
JMFN004L24+ TTGAGT-GCAAACTTCTTTGTTTAAGATCT
JMFN028N21+ TTGAGT-GCAAACTTCTTTGTTTAAGATCTGTGGA
JMFN042A08+ TTGAGT-GCAAACTTCTTTGTTTAAGATCTGT
JMFN008L09+ TTGAGT-GCAAACTTCTTTGTTTAAGATCTGTGGAGAGTGGAAAGCGATAGGG
JMFN043I24+ TTGAGT-GCAAACTTCTTTGTTTAAGATCTGTGGAGAGTGGAAAGCGATAGGG
JMFN035J10+ TTGAGTGGTAAACTTCTTTGTTTAAGATCTGTGGAGAGTGGAAAGCGATAGGGAGATGGC
____________________________________________________________
consensus TTGAGT-GCAAACTTCTTTGTTTAAGATCTGTGGAGAGTGGAAAGCGATAGGGAGATGGC