Contig 011717:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN007O19Sequence556011717 (2)ref|XP_009795763.1|5e-18PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Nicotian
JMFN035G24Sequence621011717 (2)ref|XP_009795763.1|3e-44PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Nicotian

Alignment

This contig is upended


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JMFN007O19+                                                                 AACTAA
                      ____________________________________________________________
consensus                                                                   AACTAA
 
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JMFN007O19+           GAACAAAGTATATCTCATTCCAATTCAAAACCTGAGACACCAAAGGGACCAGCAAACACT
                      ____________________________________________________________
consensus             GAACAAAGTATATCTCATTCCAATTCAAAACCTGAGACACCAAAGGGACCAGCAAACACT
 
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JMFN007O19+           GCTTTCTACTGTCATAACAACAATAATGATAACAACAACAATAATAATAATCATTAATCA
                      ____________________________________________________________
consensus             GCTTTCTACTGTCATAACAACAATAATGATAACAACAACAATAATAATAATCATTAATCA
 
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JMFN007O19+           ACACAAACAGGAAATACACCCCACAGCTACTACACTACTATAACATCATAACAACTCTTG
                      ____________________________________________________________
consensus             ACACAAACAGGAAATACACCCCACAGCTACTACACTACTATAACATCATAACAACTCTTG
 
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JMFN007O19+           CCCCGCATGCTGACCCCTCTTCATCTCAAGAATCACCACATCAATACAATGAGCAGCATA
JMFN035G24+                                                  ATCAATACAATGAGCAGCATA
                      ____________________________________________________________
consensus             CCCCGCATGCTGACCCCTCTTCATCTCAAGAATCACCACATCAATACAATGAGCAGCATA
 
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JMFN007O19+           AACGCCAAGGATCCAACGGGGGCGAGCCCAGAAGAACCCGAGCTTCCTGGAGACAGTGCC
JMFN035G24+           AACGCCAAGGATCCAACGGGGGCGAGCCCAGAAGAACCCGAGCTTCCTGGAGACAGTGCC
                      ____________________________________________________________
consensus             AACGCCAAGGATCCAACGGGGGCGAGCCCAGAAGAACCCGAGCTTCCTGGAGACAGTGCC
 
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JMFN007O19+           GGGCTGGTTTCCTTAGCTCCTACAGCCGTACTAGGAGCGCCTGCAACCCCAATAGGAGCA
JMFN035G24+           GGGCTGGTTTCCTTAGCTCCTACAGCCGTACTAGGAGCGCCTGCAACCCCAATAGGAGCA
                      ____________________________________________________________
consensus             GGGCTGGTTTCCTTAGCTCCTACAGCCGTACTAGGAGCGCCTGCAACCCCAATAGGAGCA
 
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JMFN007O19+           TCTGCGGTTTTGCTCGGTGGTGAAGCCGAGGGGGAGTGAGCGGGAGAAGAAATGGTTCCA
JMFN035G24+           TCTGCGGTTTTGCTCGGTGGTGAAGCCGAGGGGGAGTGAGCGGGAGAAGAAATGGTTCCA
                      ____________________________________________________________
consensus             TCTGCGGTTTTGCTCGGTGGTGAAGCCGAGGGGGAGTGAGCGGGAGAAGAAATGGTTCCA
 
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JMFN007O19+           CTGCTCAGGCCGCAGTTGCTGACGGAGGGGGCGGAGACATGGCAGGCGGCGGGGAGAGAC
JMFN035G24+           CTGCTCAGGCCGCAGTTGCTGACGGAGGGGGCGGAGACATGGCAGGCGGCGGGGAGAGAC
                      ____________________________________________________________
consensus             CTGCTCAGGCCGCAGTTGCTGACGGAGGGGGCGGAGACATGGCAGGCGGCGGGGAGAGAC
 
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JMFN007O19+           AAGGCCTTGGTGACATTGAGGACAACTCCCAACTGGGCGCTGTTCTTGAAGCCTTCGCAG
JMFN035G24+           AAGGCCTTGGTGACATTGAGGACAACTCCCAACTGGGCGCTGTTCTTGAAGCCTACGCAG
                      ____________________________________________________________
consensus             AAGGCCTTGGTGACATTGAGGACAACTCCCAACTGGGCGCTGTTCTTGAAGCCTTCGCAG
 
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JMFN007O19+           AGACACTCGG                                                  
JMFN035G24+           AGACACTCGGCGTTGGATTTCAGCACCATTTTCAGCCCGGAGCAGCAGGTGCCTTCCGGC
                      ____________________________________________________________
consensus             AGACACTCGGCGTTGGATTTCAGCACCATTTTCAGCCCGGAGCAGCAGGTGCCTTCCGGC
 
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JMFN035G24+           TTCTTCGTCGTGCTCCCGTTGGTCACGAAGGAGAGGCAGTCCGCCAGGTTCAGAACTACG
                      ____________________________________________________________
consensus             TTCTTCGTCGTGCTCCCGTTGGTCACGAAGGAGAGGCAGTCCGCCAGGTTCAGAACTACG
 
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JMFN035G24+           CTGTTGCAGTCCACCGCCGGCGCCGGCGCGGAATGGTGGGCGGAATCCGCGGTGACAGCC
                      ____________________________________________________________
consensus             CTGTTGCAGTCCACCGCCGGCGCCGGCGCGGAATGGTGGGCGGAATCCGCGGTGACAGCC
 
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JMFN035G24+           CAGAGGGCAAGCAATCCCAGCACTACGGGCCCAAATGCGTTCAAGCCCATAGCCATTTTT
                      ____________________________________________________________
consensus             CAGAGGGCAAGCAATCCCAGCACTACGGGCCCAAATGCGTTCAAGCCCATAGCCATTTTT
 
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JMFN035G24+           GATCGGAAAGGAGAGATTTTGTCGTCGGAATTATAGGCGGAAACAAGTTGGCGTAAGAAA
                      ____________________________________________________________
consensus             GATCGGAAAGGAGAGATTTTGTCGTCGGAATTATAGGCGGAAACAAGTTGGCGTAAGAAA