Contig 011714:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN006A24Sequence616011714 (5)emb|CDP03683.1|3e-67unnamed protein product [Coffea canephora]
JMFN034I23Sequence613011714 (5)ref|XP_009601152.1|6e-72PREDICTED: probable histone H2A variant 1 [Nicotiana tomentosiformis] ref|XP_009
JMSF011L18Sequence376011714 (5)emb|CDP03683.1|7e-33unnamed protein product [Coffea canephora]701011714 (5)emb|CDP03683.1|7e-67unnamed protein product [Coffea canephora]
JMSF044C01Sequence505003330 (7)gb|EPS65822.1|8e-47hypothetical protein M569_08957 [Genlisea aurea]709011714 (5)emb|CDP03683.1|8e-66unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF044C01+                                                                 CATCA
                      ____________________________________________________________
consensus                                                                    CATCA
 
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rJMSF011L18+               TCTCAGATAGTCAGACAATTACCTAGTTACCGCTTTCTCATTCCTCGGCTCCTCG
JMSF011L18-                TCTCAGATAGTCAGACAATTACCTAGTTACCGCTTTCTCATTCCTCGGCTCCTCG
rJMSF044C01+          CGAGGTCTCAGATAGTCAGACAATTACCTAGTTACCGCTTTCTCATTCCTCGGCTCCTCG
JMFN006A24-                                                 TTTCTCATTCCTCGGCTCCTCG
                      ____________________________________________________________
consensus             CGAGGTCTCAGATAGTCAGACAATTACCTAGTTACCGCTTTCTCATTCCTCGGCTCCTCG
 
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rJMSF011L18+          CTCTCCGCTTCTATTCGTTGTCTGCTTCCTATACTATAAGAATGGCTGGAAAGGGTGGAA
JMSF011L18-           CTCTCCGCTTCTATTCGTTGTCTGCTTCCTATACTATAAGAATGGCTGGAAAGGGTGGAA
rJMSF044C01+          CTCTCCGCTTCTATTCGTTGTCTGCTTCCTATACTATAAGAATGGCTGGAAAGGGTGGAA
JMFN006A24-           CTCTCCGCTTCTATTCGTTGTCTGCTTCCTATACTATAAGAATGGCTGGAAAGGGTGGAA
                      ____________________________________________________________
consensus             CTCTCCGCTTCTATTCGTTGTCTGCTTCCTATACTATAAGAATGGCTGGAAAGGGTGGAA
 
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rJMSF011L18+          AGGGGCTTTTGGCGGGAAAGACCACAGCTGCGGCGGCGGCGGCGGCGAACAAGGACAAGG
JMSF011L18-           AGGGGCTTTTGGCGGGAAAGACCACAGCTGCGGCGGCGGCGGCGGCGAACAAGGACAAGG
rJMSF044C01+          AGGGGCTTTTGGCGGGAAAGACCACAGCTGCGGCGGCGGCGGCGGCGAACAAGGACAAGG
JMFN006A24-           AGGGGCTTTTGGCGGGAAAGACCACAGCTGCGGCGGCGGCGGCGGCGAACAAGGACAAGG
JMFN034I23+                                                         GAACAAGGACAAGG
                      ____________________________________________________________
consensus             AGGGGCTTTTGGCGGGAAAGACCACAGCTGCGGCGGCGGCGGCGGCGAACAAGGACAAGG
 
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rJMSF011L18+          ACAAGAAAAGGCCAGTTTCTCGATCTTCTCGCGCAGGTCTCCAGTTTCCAGTTGGGCGAA
JMSF011L18-           ACAAGAAAAGGCCAGTTTCTCGATCTTCTCGCGCAGGTCTCCAGTTTCCAGTTGGGCGAA
rJMSF044C01+          ACAAGAAAAGGCCAGTTTCTCGATCTTCTCGCGCAGGTCTCCAGTTTCCAGTTGGGCGAA
JMFN006A24-           ACAAGAAAAGGCCAGTTTCTCGATCTTCTCGCGCAGGTCTCCAGTTTCCAGTTGGGCGAA
JMFN034I23+           ACAAGAAAAGGCCAGTTTCTCGATCTTCTCGCGCAGGTCTCCAGTTTCCAGTTGGGCGAA
                      ____________________________________________________________
consensus             ACAAGAAAAGGCCAGTTTCTCGATCTTCTCGCGCAGGTCTCCAGTTTCCAGTTGGGCGAA
 
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rJMSF011L18+          TTCACCGTCAGCTGAAGACCCGAACCTCAGCTCATGGCAGGGTTGGAGCAACAGCCGCGG
JMSF011L18-           TTCACCGTCAGCTGAAGACCCGAACCTCAGCTCATGGCAGGGTTGGAGCAACAGCCGCGG
rJMSF044C01+          TTCACCGTCAGCTGAAGACCCGAACCTCAGCTCATGGCAGGGTTGGAGCAACAGCCGCGG
JMFN006A24-           TTCACCGTCAGCTGAAGACCCGAACCTCAGCTCATGGCAGGGTTGGAGCAACAGCCGCGG
JMFN034I23+           TTCACCGTCAGCTGAAGACCCGAACCTCAGCTCATGGCAGGGTTGGAGCAACAGCCGCGG
                      ____________________________________________________________
consensus             TTCACCGTCAGCTGAAGACCCGAACCTCAGCTCATGGCAGGGTTGGAGCAACAGCCGCGG
 
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rJMSF011L18+          TTTACACAGCGGCAATCCTCGAGTATCTAACAGCAGAGGTGCTCGAATTGGCTGGGAACG
JMSF011L18-           TTTACACAGCGGCAATCCTCGAGTATCTAACAGCAGAGGTGCTCGAATTGGCTGGGAACG
rJMSF044C01+          TTTACACAGCGGCAATCCTCGAGTATCTAACAGCAGAGGTGCTCGAATTGGCTGGGAACG
JMFN006A24-           TTTACACAGCGGCAATCCTCGAGTATCTAACAGCAGAGGTGCTCGAATTGGCTGGGAACG
JMFN034I23+           TTTACACAGCGGCAATCCTCGAGTATCTAACAGCAGAGGTGCTCGAATTGGCTGGGAACG
                      ____________________________________________________________
consensus             TTTACACAGCGGCAATCCTCGAGTATCTAACAGCAGAGGTGCTCGAATTGGCTGGGAACG
 
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rJMSF011L18+          CCAGCAAGGATCTGAAAGTGAAGAGGATCACACCGAGGCACTTGCAGCTGGCCATTCGTG
JMSF011L18-           CCNGCAAGGATCTGAAA                                           
rJMSF044C01+          CCAGCAAGGATCTGAAAGTGAAGAGGATCACACCGAGGCACTTGCAGCTGGCCATTCGTG
JMFN006A24-           CCAGCAAGGATCTGAAAGTGAAGAGGATCACACCGAGGCACTTGCAGCTGGCCATTCGTG
JMFN034I23+           CCAGCAAGGATCTGAAAGTGAAGAGGATCACACCGAGGCACTTGCAGCTGGCCATTCGTG
                      ____________________________________________________________
consensus             CCAGCAAGGATCTGAAAGTGAAGAGGATCACACCGAGGCACTTGCAGCTGGCCATTCGTG
 
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rJMSF011L18+          GAGACGAGGAGCTTGACACCCTCATCAAGGGAACCATTGCTGGTGGTGGAGTCATCCCCC
rJMSF044C01+          GAGACGAGGAGCTTGACACCCTCATCAAGGGAACCATTGCTGGTCGTGGAGTCATCCCCC
JMFN006A24-           GAGACGAGGAGCTTGACACCCTCATCAAGGGAACCATTGCTGGTGGTGGAGTCATCCCCC
JMFN034I23+           GAGACGAGGAGCTTGACACCCTCATCAAGGGAACCATTGCTGGTGGTGGAGTCATCCCCC
                      ____________________________________________________________
consensus             GAGACGAGGAGCTTGACACCCTCATCAAGGGAACCATTGCTGGTGGTGGAGTCATCCCCC
 
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rJMSF011L18+          ACATTCACAAGTCCCTCATCAACAAAAC                                
rJMSF044C01+          ACATTCACAAGTCCCTCATCAACAAAAC                                
JMFN006A24-           ACATTCACAAGTCCCTCATCAACAAAACAAACCCCAAGGAATGAATGAATGAAAACCATA
JMFN034I23+           ACATTCACAAGTCCCTCATCAACAAAACAAACCCCAAGGAATGAATGAATGAAAACCATA
                      ____________________________________________________________
consensus             ACATTCACAAGTCCCTCATCAACAAAACAAACCCCAAGGAATGAATGAATGAAAACCATA
 
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JMFN006A24-           TGTTTAACTTTAGAAAAGGCTTCTGAGTAATTAAGACTCTTGTTGTTCTATCTTTTGCTT
JMFN034I23+           TCTTTAACTTTAGAAAAGGCTTCTGAGTAATTAAGACTCTTGTTGTTCTATC-TTTGCTT
                      ____________________________________________________________
consensus             TGTTTAACTTTAGAAAAGGCTTCTGAGTAATTAAGACTCTTGTTGTTCTATCTTTTGCTT
 
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JMFN006A24-           GTAATAAGCTGTTCTGTTAGGATGTTGTTTTGTTGGAATGGTACTTGTGCTGGT      
JMFN034I23+           GTAATAAGCTGTTCTGTTAGGATGTTGTTTTGTTGGAATGGTACTTGTGCTGGTAAAATA
                      ____________________________________________________________
consensus             GTAATAAGCTGTTCTGTTAGGATGTTGTTTTGTTGGAATGGTACTTGTGCTGGTAAAATA
 
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JMFN034I23+           CTTTTGGCTGGATAAGTTTGATTTATCTGTAATTTGTGTAGTCTTGGATGTATTAACAAT
                      ____________________________________________________________
consensus             CTTTTGGCTGGATAAGTTTGATTTATCTGTAATTTGTGTAGTCTTGGATGTATTAACAAT
 
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JMFN034I23+           TGTAACGGAAGCCCTGTTCAACAGTXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTC
                      ____________________________________________________________
consensus             TGTAACGGAAGCCCTGTTCAACAGTNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTC