Contig 011712:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035I07Sequence335011712 (2)ref|XP_006410284.1|2e-34hypothetical protein EUTSA_v10017500mg [Eutrema salsugineum] gb|ESQ51737.1| hypo
JMFN034A10Sequence427011712 (2)ref|XP_006410284.1|5e-34hypothetical protein EUTSA_v10017500mg [Eutrema salsugineum] gb|ESQ51737.1| hypo

Alignment

This contig is upended


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rJMFF035I07+                                                             GTTTAGAAG
JMFN034A10-                                                                   GAAG
                      ____________________________________________________________
consensus                                                                GTTTAGAAG
 
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rJMFF035I07+          AAGAAATAGAGAAAAATGGGTGGAGGAATGGAAGCTAACAAGAACAAGTGGATCGAGGAT
JMFN034A10-           AAGAAATAGAGAAAAATGGGTGGAGGAATGGAAGCTAACAAGAACAAGTGGATCGAGGAT
                      ____________________________________________________________
consensus             AAGAAATAGAGAAAAATGGGTGGAGGAATGGAAGCTAACAAGAACAAGTGGATCGAGGAT
 
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rJMFF035I07+          TGGGGGGCGGCTAGGGAGAATCTGGAGCACAACTTCAGGTGGAACCGCCGCAACTTCGCC
JMFN034A10-           TGGGGGGCGGCTAGGGAGAATCTGGAGCACAACTTCAGGTGGAACCGCCGCAACTTCGCC
                      ____________________________________________________________
consensus             TGGGGGGCGGCTAGGGAGAATCTGGAGCACAACTTCAGGTGGAACCGCCGCAACTTCGCC
 
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rJMFF035I07+          CTCGTTGGCCTCTTCGGAGTCGCCCTACCTATCTTGATCTACAAGGGCATCGTCAAAGAA
JMFN034A10-           CTCGTTGGCCTCTTCGGAGTCGCCCTACCTATCTTGATCTACAAGGGCATCGTCAAAGAA
                      ____________________________________________________________
consensus             CTCGTTGGCCTCTTCGGAGTCGCCCTACCTATCTTGATCTACAAGGGCATCGTCAAAGAA
 
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rJMFF035I07+          TTCCATATGCAAGATGAAGATTGGGGCAGACCACACAGGAAATTCTTGTGAGTCTCTCTG
JMFN034A10-           TTCCATATGCAAGATGAAGATTGGGGCAGACCACACAGGAAATTCTTGTGAGTCTCTCTG
                      ____________________________________________________________
consensus             TTCCATATGCAAGATGAAGATTGGGGCAGACCACACAGGAAATTCTTGTGAGTCTCTCTG
 
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rJMFF035I07+          TCCGGAGCATTATGTAATAATTTTGGGAGAACTGGAAGTGATTTTATTTCAGATCCTATC
JMFN034A10-           TCCGGAGCATTATGTAATAATTTTGGGAGAACTGGAAGTGATTTTATTTCAGATCCTATC
                      ____________________________________________________________
consensus             TCCGGAGCATTATGTAATAATTTTGGGAGAACTGGAAGTGATTTTATTTCAGATCCTATC
 
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rJMFF035I07+          AACTGGTTGAATTTTGAGTTTATTAA                                  
JMFN034A10-           AACTGGTTGAATTTTGAGTTTATTAACTTTTAATAATCTTAACTTGGTTTCAAAGCCTGG
                      ____________________________________________________________
consensus             AACTGGTTGAATTTTGAGTTTATTAACTTTTAATAATCTTAACTTGGTTTCAAAGCCTGG
 
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JMFN034A10-           CTGTGCTTGACTATCTTAGCTTCAATTCTTTTATATTACAAGTACACTGTATTTAAACTT
                      ____________________________________________________________
consensus             CTGTGCTTGACTATCTTAGCTTCAATTCTTTTATATTACAAGTACACTGTATTTAAACTT