Contig 011709:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002A22Sequence479011709 (11)gb|ADV02778.1|3e-94actin depolymerizing factor 1 [Ipomoea batatas]716011709 (11)gb|ADV02778.1|2e-92actin depolymerizing factor 1 [Ipomoea batatas]
JMFN025K08Sequence624011709 (11)gb|ADV02778.1|5e-95actin depolymerizing factor 1 [Ipomoea batatas]
JMFN033G02Sequence588011709 (11)ref|XP_010528350.1|3e-20PREDICTED: actin-depolymerizing factor 1-like [Tarenaya hassleriana]
JMFN033I02Sequence588011709 (11)ref|XP_010528350.1|3e-20PREDICTED: actin-depolymerizing factor 1-like [Tarenaya hassleriana]
JMSF001B12Sequence176011709 (11)emb|CDX88731.1|8e-17BnaA03g09180D [Brassica napus]729011709 (11)gb|ADV02778.1|2e-94actin depolymerizing factor 1 [Ipomoea batatas]
JMSF034K11Sequence686011709 (11)gb|ADV02778.1|1e-94actin depolymerizing factor 1 [Ipomoea batatas]746011709 (11)gb|ADV02778.1|1e-76actin depolymerizing factor 1 [Ipomoea batatas]
JMSF052K18Sequence690011709 (11)gb|ADV02778.1|1e-94actin depolymerizing factor 1 [Ipomoea batatas]681011709 (11)gb|ADV02778.1|9e-95actin depolymerizing factor 1 [Ipomoea batatas]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF002A22+ TC
                      ____________________________________________________________
consensus TC
 
. : . : . : . : . : . :
JMFN025K08- TTTCCTTCTCTGGTTGGCAAAGT
JMSF034K11- GAAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
JMSF001B12- GAAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
rJMSF052K18+ GAAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
JMSF052K18- GAAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
JMFF002A22- AAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
rJMFF002A22+ ATCGCAGTCTGGAACAGCGATAACTCGAGGAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
                      ____________________________________________________________
consensus ATCGCAGTCTGGAACAGCGATAACTCGAGAAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
 
. : . : . : . : . : . :
JMFN025K08- CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
JMSF034K11- CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
JMSF001B12- CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
rJMSF052K18+ CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
JMSF052K18- CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
JMFF002A22- CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
rJMFF002A22+ CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
rJMSF001B12+ GTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
                      ____________________________________________________________
consensus CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
 
. : . : . : . : . : . :
JMFN025K08- GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
JMSF034K11- GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
JMSF001B12- GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
rJMSF052K18+ GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
JMSF052K18- GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
JMFF002A22- GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAGAGCGAAAAGAACGCACCGTTTTAT
rJMFF002A22+ GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAGAGCGAAAAGAACGCACCGTTTTAT
rJMSF001B12+ GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
rJMSF034K11+ TGAAAGCGAAAAGAACGCACCGTTTTAT
                      ____________________________________________________________
consensus GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
 
. : . : . : . : . : . :
JMFN025K08- TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
JMSF034K11- TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
JMSF001B12- TGTTTTCAAGATCGAGGAGA
rJMSF052K18+ TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
JMSF052K18- TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
JMFF002A22- TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
rJMFF002A22+ TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
rJMSF001B12+ TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
rJMSF034K11+ TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
                      ____________________________________________________________
consensus TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
 
. : . : . : . : . : . :
JMFN025K08- GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
JMSF034K11- GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
rJMSF052K18+ GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
JMSF052K18- GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
JMFF002A22- GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
rJMFF002A22+ GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
rJMSF001B12+ GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
rJMSF034K11+ GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
                      ____________________________________________________________
consensus GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
 
. : . : . : . : . : . :
JMFN025K08- TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
JMSF034K11- TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
rJMSF052K18+ TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
JMSF052K18- TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
JMFF002A22- TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
rJMFF002A22+ TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
rJMSF001B12+ TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
rJMSF034K11+ TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
                      ____________________________________________________________
consensus TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
 
. : . : . : . : . : . :
JMFN025K08- GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
JMSF034K11- GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
rJMSF052K18+ GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
JMSF052K18- GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
JMFF002A22- GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
rJMFF002A22+ GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
rJMSF001B12+ GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
rJMSF034K11+ GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
JMFN033G02+ ATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
JMFN033I02+ ATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
                      ____________________________________________________________
consensus GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
 
. : . : . : . : . : . :
JMFN025K08- CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
JMSF034K11- CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
rJMSF052K18+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
JMSF052K18- CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
JMFF002A22- CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGGAATGGG
rJMFF002A22+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGGAATGGG
rJMSF001B12+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
rJMSF034K11+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
JMFN033G02+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
JMFN033I02+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
                      ____________________________________________________________
consensus CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
 
. : . : . : . : . : . :
JMFN025K08- TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
JMSF034K11- TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
rJMSF052K18+ TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
JMSF052K18- TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
JMFF002A22- TATGGATGTGATTAGAAGCCGCGCTAAC
rJMFF002A22+ TATGGATCTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
rJMSF001B12+ TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
rJMSF034K11+ TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
JMFN033G02+ TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
JMFN033I02+ TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
                      ____________________________________________________________
consensus TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
 
. : . : . : . : . : . :
JMFN025K08- TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
JMSF034K11- TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
rJMSF052K18+ TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
JMSF052K18- TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
rJMFF002A22+ TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
rJMSF001B12+ TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
rJMSF034K11+ TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
JMFN033G02+ TTTTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
JMFN033I02+ TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
                      ____________________________________________________________
consensus TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
 
. : . : . : . : . : . :
JMFN025K08- TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
JMSF034K11- TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
rJMSF052K18+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
JMSF052K18- TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
rJMFF002A22+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
rJMSF001B12+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
rJMSF034K11+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
JMFN033G02+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
JMFN033I02+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
                      ____________________________________________________________
consensus TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
 
. : . : . : . : . : . :
JMFN025K08- A
JMSF034K11- ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTAT
rJMSF052K18+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTG
JMSF052K18- ATATGATCTTCNTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGT
rJMFF002A22+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATA
rJMSF001B12+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATATGAGTTG
rJMSF034K11+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATATGAGTTG
JMFN033G02+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATATGAGTTG
JMFN033I02+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATATGAGTTG
                      ____________________________________________________________
consensus ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATATGAGTTG
 
. : . : . : . : . : . :
rJMSF001B12+ ATGATTTGTTGCCTCAAAAATTCATTGTGTGTGCCTCACTAATAGTTTGATGCCTATGAT
rJMSF034K11+ ATGATTTGTTGCCTCAAAAATTCATTGTGTGTGCCTCACTAATAGTTTGATGCCTATGAT
JMFN033G02+ ATGATTTGTTGCCTCAAAAATTCATTGTGTGTGCCTCACTAATAGTTTGATGCCTATGAT
JMFN033I02+ ATGATTTGTTGCCTCAAAAATTCATTGTGTGTGCCTCACTAATAGTTTGATGCCTATGAT
                      ____________________________________________________________
consensus ATGATTTGTTGCCTCAAAAATTCATTGTGTGTGCCTCACTAATAGTTTGATGCCTATGAT
 
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rJMSF001B12+ CCATAATGT
rJMSF034K11+ CCATAATGTTAAAGAGCTTGCAAGGGGGATAGATGCTACTTTTAGTTTCCCTTTTTTTGC
JMFN033G02+ CCATAATGTTAAAGAGCTTGCAAGGGGGATAGATGCTACTTTTAGTTTCCCTTTTTTTGC
JMFN033I02+ CCATAATGTTAAAGAGCTTGCAAGGGGGATAGATGCTACTTTTAGTTTCCCTTTTTTTGC
                      ____________________________________________________________
consensus CCATAATGTTAAAGAGCTTGCAAGGGGGATAGATGCTACTTTTAGTTTCCCTTTTTTTGC
 
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rJMSF034K11+ CTTTATAGTAGTTCATCTGATATTTCACCCTAGCTCTGTCTTGTGATCAGATCAGAAA
JMFN033G02+ CTTTATAGTAGTTCATCTGATATTTCACCCTAGCTCTGTCTTGTGATCAGATCAGAAATA
JMFN033I02+ CTTTATAGTAGTTCATCTGATATTTCACCCTAGCTCTGTCTTGTGATCAGATCAGAAATA
                      ____________________________________________________________
consensus CTTTATAGTAGTTCATCTGATATTTCACCCTAGCTCTGTCTTGTGATCAGATCAGAAATA
 
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JMFN033G02+ TGAATATTTTGTTTTCTTC
JMFN033I02+ TGAATATTTTGTTTTCTTCXXXXXXXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTC
                      ____________________________________________________________
consensus TGAATATTTTGTTTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTC