| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002A22 | Sequence | 479 | 011709 (11) | gb|ADV02778.1| | 3e-94 | actin depolymerizing factor 1 [Ipomoea batatas] | 716 | 011709 (11) | gb|ADV02778.1| | 2e-92 | actin depolymerizing factor 1 [Ipomoea batatas] |
| JMFN025K08 | Sequence | 624 | 011709 (11) | gb|ADV02778.1| | 5e-95 | actin depolymerizing factor 1 [Ipomoea batatas] | |||||
| JMFN033G02 | Sequence | 588 | 011709 (11) | ref|XP_010528350.1| | 3e-20 | PREDICTED: actin-depolymerizing factor 1-like [Tarenaya hassleriana] | |||||
| JMFN033I02 | Sequence | 588 | 011709 (11) | ref|XP_010528350.1| | 3e-20 | PREDICTED: actin-depolymerizing factor 1-like [Tarenaya hassleriana] | |||||
| JMSF001B12 | Sequence | 176 | 011709 (11) | emb|CDX88731.1| | 8e-17 | BnaA03g09180D [Brassica napus] | 729 | 011709 (11) | gb|ADV02778.1| | 2e-94 | actin depolymerizing factor 1 [Ipomoea batatas] |
| JMSF034K11 | Sequence | 686 | 011709 (11) | gb|ADV02778.1| | 1e-94 | actin depolymerizing factor 1 [Ipomoea batatas] | 746 | 011709 (11) | gb|ADV02778.1| | 1e-76 | actin depolymerizing factor 1 [Ipomoea batatas] |
| JMSF052K18 | Sequence | 690 | 011709 (11) | gb|ADV02778.1| | 1e-94 | actin depolymerizing factor 1 [Ipomoea batatas] | 681 | 011709 (11) | gb|ADV02778.1| | 9e-95 | actin depolymerizing factor 1 [Ipomoea batatas] |
This contig is upended
. : . : . : . : . : . :
rJMFF002A22+ TC
____________________________________________________________
consensus TC
. : . : . : . : . : . :
JMFN025K08- TTTCCTTCTCTGGTTGGCAAAGT
JMSF034K11- GAAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
JMSF001B12- GAAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
rJMSF052K18+ GAAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
JMSF052K18- GAAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
JMFF002A22- AAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
rJMFF002A22+ ATCGCAGTCTGGAACAGCGATAACTCGAGGAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
____________________________________________________________
consensus ATCGCAGTCTGGAACAGCGATAACTCGAGAAAGTCGGTTTCCTTCTCTGGTTGGCAAAGT
. : . : . : . : . : . :
JMFN025K08- CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
JMSF034K11- CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
JMSF001B12- CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
rJMSF052K18+ CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
JMSF052K18- CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
JMFF002A22- CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
rJMFF002A22+ CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
rJMSF001B12+ GTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
____________________________________________________________
consensus CTCTCTTGGGTCCTAATTCAGTACAGCGAAAATGGCTAATGCAGCTTCTGGGATGGCAGT
. : . : . : . : . : . :
JMFN025K08- GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
JMSF034K11- GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
JMSF001B12- GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
rJMSF052K18+ GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
JMSF052K18- GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
JMFF002A22- GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAGAGCGAAAAGAACGCACCGTTTTAT
rJMFF002A22+ GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAGAGCGAAAAGAACGCACCGTTTTAT
rJMSF001B12+ GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
rJMSF034K11+ TGAAAGCGAAAAGAACGCACCGTTTTAT
____________________________________________________________
consensus GCACGATGACTGCAAGTTGAGGTTCTTGGAGCTGAAAGCGAAAAGAACGCACCGTTTTAT
. : . : . : . : . : . :
JMFN025K08- TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
JMSF034K11- TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
JMSF001B12- TGTTTTCAAGATCGAGGAGA
rJMSF052K18+ TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
JMSF052K18- TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
JMFF002A22- TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
rJMFF002A22+ TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
rJMSF001B12+ TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
rJMSF034K11+ TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
____________________________________________________________
consensus TGTTTTCAAGATCGAGGAGAAGCAGAAGCAGGTCATTGTCGAAAAGGTTGGTGAGCCAGC
. : . : . : . : . : . :
JMFN025K08- GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
JMSF034K11- GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
rJMSF052K18+ GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
JMSF052K18- GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
JMFF002A22- GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
rJMFF002A22+ GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
rJMSF001B12+ GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
rJMSF034K11+ GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
____________________________________________________________
consensus GCAAAGCTACGAGGATTTCACCGCTAGCCTTCCTGCTGATGAATGCCGATACGCAGTTTA
. : . : . : . : . : . :
JMFN025K08- TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
JMSF034K11- TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
rJMSF052K18+ TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
JMSF052K18- TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
JMFF002A22- TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
rJMFF002A22+ TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
rJMSF001B12+ TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
rJMSF034K11+ TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
____________________________________________________________
consensus TGATTTTGATTTCGTGACAGCGGAGAACTGCCAGAAAAGCAAGATTTTCTTCATCGCATG
. : . : . : . : . : . :
JMFN025K08- GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
JMSF034K11- GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
rJMSF052K18+ GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
JMSF052K18- GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
JMFF002A22- GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
rJMFF002A22+ GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
rJMSF001B12+ GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
rJMSF034K11+ GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
JMFN033G02+ ATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
JMFN033I02+ ATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
____________________________________________________________
consensus GTCCCCCGACACATCAAGGGTTAGGAGCAAGATGATATACGCGAGCTCCAAGGATAGATT
. : . : . : . : . : . :
JMFN025K08- CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
JMSF034K11- CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
rJMSF052K18+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
JMSF052K18- CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
JMFF002A22- CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGGAATGGG
rJMFF002A22+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGGAATGGG
rJMSF001B12+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
rJMSF034K11+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
JMFN033G02+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
JMFN033I02+ CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
____________________________________________________________
consensus CAAGAGGGAGCTCGATGGAATTCAGGTGGAACTCCAAGCGACCGACCCGACTGAAATGGG
. : . : . : . : . : . :
JMFN025K08- TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
JMSF034K11- TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
rJMSF052K18+ TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
JMSF052K18- TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
JMFF002A22- TATGGATGTGATTAGAAGCCGCGCTAAC
rJMFF002A22+ TATGGATCTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
rJMSF001B12+ TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
rJMSF034K11+ TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
JMFN033G02+ TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
JMFN033I02+ TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
____________________________________________________________
consensus TATGGATGTGATTAGAAGCCGCGCTAACTAGATGCAGCAGAGAGAGATGGATCGATAGAC
. : . : . : . : . : . :
JMFN025K08- TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
JMSF034K11- TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
rJMSF052K18+ TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
JMSF052K18- TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
rJMFF002A22+ TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
rJMSF001B12+ TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
rJMSF034K11+ TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
JMFN033G02+ TTTTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
JMFN033I02+ TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
____________________________________________________________
consensus TTCTGATAGACATTGTAAGGGAGAACTCACTGCAGTCTTCTTTACTCGGTCAAAATGTTT
. : . : . : . : . : . :
JMFN025K08- TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
JMSF034K11- TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
rJMSF052K18+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
JMSF052K18- TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
rJMFF002A22+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
rJMSF001B12+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
rJMSF034K11+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
JMFN033G02+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
JMFN033I02+ TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
____________________________________________________________
consensus TTATGGTTTGTGAAAGGGAAAAACTTGGCTACCGATAATATTTGATTGCCAAGGGCTACC
. : . : . : . : . : . :
JMFN025K08- A
JMSF034K11- ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTAT
rJMSF052K18+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTG
JMSF052K18- ATATGATCTTCNTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGT
rJMFF002A22+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATA
rJMSF001B12+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATATGAGTTG
rJMSF034K11+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATATGAGTTG
JMFN033G02+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATATGAGTTG
JMFN033I02+ ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATATGAGTTG
____________________________________________________________
consensus ATATGATCTTCTTCTTCTATTTATTTTGAACAAAATTTGTGGTGTCTGGTATATGAGTTG
. : . : . : . : . : . :
rJMSF001B12+ ATGATTTGTTGCCTCAAAAATTCATTGTGTGTGCCTCACTAATAGTTTGATGCCTATGAT
rJMSF034K11+ ATGATTTGTTGCCTCAAAAATTCATTGTGTGTGCCTCACTAATAGTTTGATGCCTATGAT
JMFN033G02+ ATGATTTGTTGCCTCAAAAATTCATTGTGTGTGCCTCACTAATAGTTTGATGCCTATGAT
JMFN033I02+ ATGATTTGTTGCCTCAAAAATTCATTGTGTGTGCCTCACTAATAGTTTGATGCCTATGAT
____________________________________________________________
consensus ATGATTTGTTGCCTCAAAAATTCATTGTGTGTGCCTCACTAATAGTTTGATGCCTATGAT
. : . : . : . : . : . :
rJMSF001B12+ CCATAATGT
rJMSF034K11+ CCATAATGTTAAAGAGCTTGCAAGGGGGATAGATGCTACTTTTAGTTTCCCTTTTTTTGC
JMFN033G02+ CCATAATGTTAAAGAGCTTGCAAGGGGGATAGATGCTACTTTTAGTTTCCCTTTTTTTGC
JMFN033I02+ CCATAATGTTAAAGAGCTTGCAAGGGGGATAGATGCTACTTTTAGTTTCCCTTTTTTTGC
____________________________________________________________
consensus CCATAATGTTAAAGAGCTTGCAAGGGGGATAGATGCTACTTTTAGTTTCCCTTTTTTTGC
. : . : . : . : . : . :
rJMSF034K11+ CTTTATAGTAGTTCATCTGATATTTCACCCTAGCTCTGTCTTGTGATCAGATCAGAAA
JMFN033G02+ CTTTATAGTAGTTCATCTGATATTTCACCCTAGCTCTGTCTTGTGATCAGATCAGAAATA
JMFN033I02+ CTTTATAGTAGTTCATCTGATATTTCACCCTAGCTCTGTCTTGTGATCAGATCAGAAATA
____________________________________________________________
consensus CTTTATAGTAGTTCATCTGATATTTCACCCTAGCTCTGTCTTGTGATCAGATCAGAAATA
. : . : . : . : . : . :
JMFN033G02+ TGAATATTTTGTTTTCTTC
JMFN033I02+ TGAATATTTTGTTTTCTTCXXXXXXXXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTC
____________________________________________________________
consensus TGAATATTTTGTTTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTC