Contig 011704:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027H15Sequence556011704 (4)ref|XP_009773000.1|3e-77PREDICTED: secoisolariciresinol dehydrogenase-like [Nicotiana sylvestris]697014861ref|XP_002523859.1|4e-84short chain alcohol dehydrogenase, putative [Ricinus communis] gb|EEF38585.1| sh
JMFF049J01Sequence644011704 (4)ref|XP_009773000.1|1e-97PREDICTED: secoisolariciresinol dehydrogenase-like [Nicotiana sylvestris]
JMFN031F19Sequence141011704 (4)gb|KDP34634.1|9e-13hypothetical protein JCGZ_11952 [Jatropha curcas]
JMFN031H17Sequence519011704 (4)ref|XP_009773000.1|3e-49PREDICTED: secoisolariciresinol dehydrogenase-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF049J01+                                                 GACACGCAGTTGACTCGAACTC
                      ____________________________________________________________
consensus                                                   GACACGCAGTTGACTCGAACTC
 
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JMFF049J01+           CGTACCGCCCCAGGTCAATCGCCGTGTTCCTCGTAAGCCCCAGCACGCCGTGCTTCGAGC
                      ____________________________________________________________
consensus             CGTACCGCCCCAGGTCAATCGCCGTGTTCCTCGTAAGCCCCAGCACGCCGTGCTTCGAGC
 
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JMFF027H15+                 ACGCGTGCGACGCCACGCCGCCGGTCACGGCGCACACGCTCGCTGTGGTAATTA
JMFF049J01+           TCGTGTACGCGTGCGACGCCACGCCGCCGGTCACGGCGCACACGCTCGCTGTGGTAATTA
                      ____________________________________________________________
consensus             TCGTGTACGCGTGCGACGCCACGCCGCCGGTCACGGCGCACACGCTCGCTGTGGTAATTA
 
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JMFF027H15+           TGCTGCCGCGTCGGTTCGGGACCATCACGCGCGCGGCGTGTTTGGTTCCCAGAAACGCGC
JMFF049J01+           TGCTGCCGCGTCGGTTCGGGACCATCACGCGCGCGGCGTGTTTGGTTCCCAGAAACGCGC
                      ____________________________________________________________
consensus             TGCTGCCGCGTCGGTTCGGGACCATCACGCGCGCGGCGTGTTTGGTTCCCAGAAACGCGC
 
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JMFF027H15+           CGACGAGGTTTACGCCGACGACGCGCTCGAAGTTGGATTTCTCGTCGCCCAGGATGCTGG
JMFN031F19-                                CGCGCTCGAAGTTGGATTTCTCGTCGCCCAGGATGCTGG
JMFF049J01+           CGACGAGGTTTACGCCGACGACGCGCTCGAAGTTGGATTTCTCGTCGCCCAGGATGCTGG
JMFN031H17-                                CGCGCTCGAAGTTGGATTTCTCGTCGCCCAGGATGCTGG
                      ____________________________________________________________
consensus             CGACGAGGTTTACGCCGACGACGCGCTCGAAGTTGGATTTCTCGTCGCCCAGGATGCTGG
 
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JMFF027H15+           GTCGGTTCAGTCCCGTGATTCCGGCGTTGTTGTACATGATGTCGAGCTTGCCGAATTTTG
JMFN031F19-           GTCGGTTCAGTCCCGTGATTCCGGCGTTGTTGTACATGATGTCGAGCTTGCCGAATTTTG
JMFF049J01+           GTCGGTTCAGTCCCGTGATTCCGGCGTTGTTGTACATGATGTCGAGCTTGCCGAATTTTG
JMFN031H17-           GTCGGTTCAGTCCCGTGATTCCGGCGTTGTTGTACATGATGTCGAGCTTGCCGAATTTTG
                      ____________________________________________________________
consensus             GTCGGTTCAGTCCCGTGATTCCGGCGTTGTTGTACATGATGTCGAGCTTGCCGAATTTTG
 
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JMFF027H15+           AAACGGCGGCGTTGACGGCGTTCTCAACGTCGGATTCCTTCGTCACGTCGCAGCGGACAA
JMFN031F19-           AAACGGCGGCGTTGACGGCGTTTTCAACGTCGGATTCCTTCG                  
JMFF049J01+           AAACGGCGGCGTTGACGGCGTTTTCAACGTCGGATTCCTTCGTCACGTCGCAGCGGACAA
JMFN031H17-           AAACGGCGGCGTTGACGGCGTTTTCAACGTCGGATTCCTTCGTCACGTCGCAGCGGACAA
                      ____________________________________________________________
consensus             AAACGGCGGCGTTGACGGCGTTTTCAACGTCGGATTCCTTCGTCACGTCGCAGCGGACAA
 
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JMFF027H15+           AGGTGGCCGACGACGCGGTGTCCAATTCGTCGCAAACTTTTTGCGCTAAATCATCTTGAA
JMFF049J01+           AGGTGGCCGACGACGCGGTGTCCAATTCGTCGCAAACTTTTTGCGCTAAATCATCTTGAA
JMFN031H17-           AGGTGGCCGACGACGCGGTGTCCAATTCGTCGCAAACTTTTTGCGCTAAATCATCTTGAA
                      ____________________________________________________________
consensus             AGGTGGCCGACGACGCGGTGTCCAATTCGTCGCAAACTTTTTGCGCTAAATCATCTTGAA
 
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JMFF027H15+           TGTCCGCTATCACCACCTTAGCTCCATGCCGGGAAAACAGCCTCGCTGCCTTCTCGCCGA
JMFF049J01+           TGTCCGCTATCACCACCTTAGCTCCATGCCGGGAAAACAGCCTCGCTGCCTTCTCGCCGA
JMFN031H17-           TGTCCGCTATCACCACCTTAGCTCCATGCCGGGAAAACAGCCTCGCTGCCTTCTCGCCGA
                      ____________________________________________________________
consensus             TGTCCGCTATCACCACCTTAGCTCCATGCCGGGAAAACAGCCTCGCTGCCTTCTCGCCGA
 
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JMFF027H15+           TGCCGCTGGCGGCGCCGGTGATGAGCGCAACCTTTCCTTCTAGCCT              
JMFF049J01+           TGCCGCTGGCGGCGCCGGTGATGAGCGCAACCTTTCCTTCTAGCCT              
JMFN031H17-           TGCCGCTGGCGGCGCCGGTGATGAGCGCAACCTTTCCTTCTAGCCTAAATAGGAAATAAT
                      ____________________________________________________________
consensus             TGCCGCTGGCGGCGCCGGTGATGAGCGCAACCTTTCCTTCTAGCCTAAATAGGAAATAAT
 
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JMFN031H17-           GTATCGATATATATATATATATATATATATATATATATATATATATGAATTTCACAAATC
                      ____________________________________________________________
consensus             GTATCGATATATATATATATATATATATATATATATATATATATATGAATTTCACAAATC
 
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JMFN031H17-           AAATTTAGAACAATATTATTAAGGCTCAATCTCATCGTGACATCATGAGTTTATTCCACT
                      ____________________________________________________________
consensus             AAATTTAGAACAATATTATTAAGGCTCAATCTCATCGTGACATCATGAGTTTATTCCACT
 
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JMFN031H17-           TTTTATCCTATCATCCTGAGATTATTTTCACATTTGGTCTCACGATGTTAAAACTTTGTC
                      ____________________________________________________________
consensus             TTTTATCCTATCATCCTGAGATTATTTTCACATTTGGTCTCACGATGTTAAAACTTTGTC