Contig 011702:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN004J04Sequence516011702 (12)ref|XP_009607031.1|4e-49PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif
JMFN007A02Sequence536011702 (12)ref|XP_009607031.1|4e-49PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif
JMFN013B13Sequence522011702 (12)ref|XP_009607031.1|4e-49PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif
JMFN028F08Sequence556011702 (12)ref|XP_009607031.1|4e-49PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif
JMFN029P15Sequence531011702 (12)ref|XP_009607031.1|3e-49PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif
JMFN036G04Sequence526011702 (12)ref|XP_009607031.1|3e-49PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif
JMFN043M19Sequence533011702 (12)ref|XP_009607031.1|4e-49PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif
JMFN045E13Sequence520011702 (12)ref|XP_009607031.1|3e-49PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif
JMFN046C14Sequence534011702 (12)ref|XP_009607031.1|3e-49PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif
JMSF025L21Sequence558011702 (12)ref|XP_009607031.1|4e-49PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif507011702 (12)ref|XP_009607031.1|2e-49PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif
JMSF029P06Sequence632016812ref|XP_010091880.1|9e-07hypothetical protein L484_009496 [Morus notabilis] gb|EXB46347.1| hypothetical p464011702 (12)ref|XP_009607031.1|5e-30PREDICTED: macrophage migration inhibitory factor homolog [Nicotiana tomentosif

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN029P15+ AAATAGCCAAGCCAATGCATATT
JMFN036G04+ AGCCAAGCCAATGCATATT
JMFN007A02+ GCCAAGCCAATGCATATT
JMFN013B13+ AGCCAAGCCAATGCATATT
JMFN004J04+ AGCCAAGCCAATGCATATT
JMFN043M19+ AGCCAAGCCAATGCATATT
JMFN046C14+ GCCAAGCCAATGCATATT
JMFN045E13+ GCCAAGCCAATGCATATT
JMSF025L21+ GCCAAGCCAATGCATATT
JMFN028F08+ CAAGCCAATGCATATT
                      ____________________________________________________________
consensus AAATAGCCAAGCCAATGCATATT
 
. : . : . : . : . : . :
JMFN029P15+ CATTTTACTGCATCAAGGGTACAACATTACAATCATCAAACTAAGACCTTATTATGCTTG
JMFN036G04+ CATTTTACTGCATCAAGGGTACAACATTACAATCATCAAACTAAGACCTTATTATGCTTG
JMFN007A02+ CATTTTACTGCATCAAGGGTACAACATTACAATCATCAAACTAAGACCTTATTATGCTTG
JMFN013B13+ CATTTTACTGCATCAAGGGTACAACATTACAATCATCAAACTAAGACCTTATTATGCTTG
JMFN004J04+ CATTTTACTGCATCAAGGGTACAACATTACAATCATCAAACTAAGACCTTATTATGCTTG
rJMSF029P06- ACATTACAATCATCAAACTAAGACCTTATTATGCTTG
JMFN043M19+ CATTTTACTGCATCAAGGGTACAACATTACAATCATCAAACTAAGACCTTATTATGCTTG
JMFN046C14+ CATTTTACTGCATCAAGGGTACAACATTACAATCATCAAACTAAGACCTTATTATGCTTG
JMFN045E13+ CATTTTACTGCATCAAGGGTACAACATTACAATCATCAAACTAAGACCTTATTATGCTTG
rJMSF025L21- ACATTACAATCATCAAACTAAGACCTTATTATGCTTG
JMSF025L21+ CATTTTACTGCATCAAGGGTACAACATTACAATCATCAAACTAAGACCTTATTATGCTTG
JMFN028F08+ CATTTTACTGCATCAAGGGTACAACATTACAATCATCAAACTAAGACCTTATTATGCTTG
                      ____________________________________________________________
consensus CATTTTACTGCATCAAGGGTACAACATTACAATCATCAAACTAAGACCTTATTATGCTTG
 
. : . : . : . : . : . :
JMFN029P15+ TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
JMFN036G04+ TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
JMFN007A02+ TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
JMFN013B13+ TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
JMFN004J04+ TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
rJMSF029P06- TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
JMFN043M19+ TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
JMFN046C14+ TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
JMFN045E13+ TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
rJMSF025L21- TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
JMSF025L21+ TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
JMFN028F08+ TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
                      ____________________________________________________________
consensus TTGAACACAGATCAAATGACTTTTGACTACATTTTGGACAATCTTTTTGCCAGTGTGGTA
 
. : . : . : . : . : . :
JMFN029P15+ TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
JMFN036G04+ TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
JMFN007A02+ TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
JMFN013B13+ TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
JMFN004J04+ TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
rJMSF029P06- TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
JMFN043M19+ TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
JMFN046C14+ TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
JMFN045E13+ TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
rJMSF025L21- TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
JMSF025L21+ TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
JMFN028F08+ TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
                      ____________________________________________________________
consensus TCGTAGACCTTGAGGACGAAGCGAGCTCTGGGAATGGAGAGTTTGTTCTCCAGAATTGTG
 
. : . : . : . : . : . :
JMFN029P15+ CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
JMFN036G04+ CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
JMFN007A02+ CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
JMFN013B13+ CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
JMFN004J04+ CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
rJMSF029P06- CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
JMFN043M19+ CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
JMFN046C14+ CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
JMFN045E13+ CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
rJMSF025L21- CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
JMSF025L21+ CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
JMFN028F08+ CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
                      ____________________________________________________________
consensus CCAATGGTAGAGATGAGCTCCCTCTTAACTTGAGTGGTGATGCCTCCCATGGACACAATC
 
. : . : . : . : . : . :
JMFN029P15+ TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
JMFN036G04+ TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
JMFN007A02+ TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
JMFN013B13+ TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
JMFN004J04+ TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
rJMSF029P06- TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
JMFN043M19+ TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
JMFN046C14+ TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
JMFN045E13+ TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
rJMSF025L21- TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
JMSF025L21+ TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
JMFN028F08+ TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
                      ____________________________________________________________
consensus TCTGCCAGAGCTGCTGCCTCTTTGCTGCCTCCAAAGGTTATGTTTGCAGATCCTTTCAGG
 
. : . : . : . : . : . :
JMFN029P15+ ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
JMFN036G04+ ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
JMFN007A02+ ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
JMFN013B13+ ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
JMFN004J04+ ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
rJMSF029P06- ATGATCATCACAAACTGT
JMFN043M19+ ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
JMFN046C14+ ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
JMFN045E13+ ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
rJMSF025L21- ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
JMSF025L21+ ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
JMFN028F08+ ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
                      ____________________________________________________________
consensus ATGATCATCACAAACTGTTCGGGTTTTCCGATGATGGTGGCGACGGCGGTGGTGGCTTCC
 
. : . : . : . : . : . :
JMFN029P15+ CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
JMFN036G04+ CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
JMFN007A02+ CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
JMFN013B13+ CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
JMFN004J04+ CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
JMFN043M19+ CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
JMFN046C14+ CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
JMFN045E13+ CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
rJMSF025L21- CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
JMSF025L21+ CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
JMFN028F08+ CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
                      ____________________________________________________________
consensus CGGGAAAAGGATTCCACGTCTACGTCTTCAAGCTTCACATTGGTTGATATATCTAAGCAA
 
. : . : . : . : . : . :
JMFN029P15+ GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
JMFN036G04+ GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
JMFN007A02+ GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
JMFN013B13+ GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
JMFN004J04+ GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
JMFN043M19+ GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
JMFN046C14+ GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
JMFN045E13+ GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
rJMSF025L21- GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
JMSF025L21+ GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
JMFN028F08+ GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
                      ____________________________________________________________
consensus GGCATCTTTTTACTTTTTCTTAAATATATATATGTATATATATATAATGTCACTGTATAT
 
. : . : . : . : . : . :
JMFN029P15+ ATATATGATGAAGGGAGTTGAATTGATA
JMFN036G04+ ATATATGATGAAGGGAGTTGAATTGAT
JMFN007A02+ ATATATGATGAAGGGAGTTGAATTGA
JMFN013B13+ ATATATGATGAAGGGAGTTGAAT
JMFN004J04+ ATATATGATGAAGGGAG
JMFN043M19+ ATATATGATGAAGGGAGTTGAATTGATAGATCGA
JMFN046C14+ ATATATGATGAAGGGAGTTGAATTGATAGATCGATC
JMFN045E13+ ATATATGATGAA
rJMSF025L21- ATATATGATGAAGGGAGTTGAATTGATAGATCGATCGAGCTTAATTGT
JMSF025L21+ ATATATGATGAAGGGAGTTGAATTGATAGATCGATCGAGCTTAATTGT
JMFN028F08+ ATATATGATGAAGGGAGTTGAATTGATAGATCGATCGAGCTTAATTGTTACGATGCATGC
                      ____________________________________________________________
consensus ATATATGATGAAGGGAGTTGAATTGATAGATCGATCGAGCTTAATTGTTACGATGCATGC