Contig 011701:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007G08Sequence514019495emb|CDP13650.1|3e-18unnamed protein product [Coffea canephora]709011701 (2)gb|KHN01498.1|1e-33KH domain-containing protein [Glycine soja]
JMFN020I20Sequence638011701 (2)gb|KDP36322.1|2e-78hypothetical protein JCGZ_09537 [Jatropha curcas]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-                                                   TTGCTGTACTTATACAGTG
                      ____________________________________________________________
consensus                                                      TTGCTGTACTTATACAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          TTAAATACAACCCACAGCCAGTTTCATGGTGGATGGATCATTTGCAGGTTTGCTCCTCAC
                      ____________________________________________________________
consensus             TTAAATACAACCCACAGCCAGTTTCATGGTGGATGGATCATTTGCAGGTTTGCTCCTCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          TCCCATACATAAACCATAACTCAATCAATACTCACAAGAATCTCCACAACATGAGAACTA
                      ____________________________________________________________
consensus             TCCCATACATAAACCATAACTCAATCAATACTCACAAGAATCTCCACAACATGAGAACTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          CTCCAAACCTTAAAAGTAAAAGATGAAGAAAAGACAAACATGGGGAAGATTGACCATATG
                      ____________________________________________________________
consensus             CTCCAAACCTTAAAAGTAAAAGATGAAGAAAAGACAAACATGGGGAAGATTGACCATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          CATTATCTGTAACACATTTTGCTGCTATGGTCTTCACACAAATACCTCCGCGAACAGAAC
                      ____________________________________________________________
consensus             CATTATCTGTAACACATTTTGCTGCTATGGTCTTCACACAAATACCTCCGCGAACAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          ATATCATACAGAAACGAGAGTTAACGAGATGTAGCCAATACCCCGATGGCACTTGAAGGC
                      ____________________________________________________________
consensus             ATATCATACAGAAACGAGAGTTAACGAGATGTAGCCAATACCCCGATGGCACTTGAAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          ATTGGCTGGGTAGCAACGGGTGTTGCATTGAAACTGCAGCGTAGTTGGCTTAGCAACTAT
                      ____________________________________________________________
consensus             ATTGGCTGGGTAGCAACGGGTGTTGCATTGAAACTGCAGCGTAGTTGGCTTAGCAACTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          GGTTGTTGCTTCGAAACTGCTGCTTAGTAGTCGCTTAGATGAGTGTATGAGCTTTGAAGC
                      ____________________________________________________________
consensus             GGTTGTTGCTTCGAAACTGCTGCTTAGTAGTCGCTTAGATGAGTGTATGAGCTTTGAAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          CCAACCACAACAGCCGCCAGATCACCCCTGGGTTTTGGCCCTCTTCATCCCGAGGTTGTT
JMFN020I20+                                             TTGGCCCTCTTCATCCCGAGGTTGTT
                      ____________________________________________________________
consensus             CCAACCACAACAGCCGCCAGATCACCCCTGGGTTTTGGCCCTCTTCATCCCGAGGTTGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          GTGAAAAGGCGACACAGAACCAGACATTTGAGACCCCTCTTCACGCAGGGTACCATTGAG
JMFN020I20+           GTGAAAAGGCGACACAGAACCAGACATTTGAGACCCCTCTTCACGCAGGGTACCATTGAG
                      ____________________________________________________________
consensus             GTGAAAAGGCGACACAGAACCAGACATTTGAGACCCCTCTTCACGCAGGGTACCATTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          CATTGCCAATTCTCTTAGCTGCTGTTTTTTGTAAAAATCTTGAGACTCATCCACAGGCTT
JMFN020I20+           CATTGCCAATTCTCTTAGCTGCTGTTTTTTGTAAAAATCTTGAGACTCATCCACAGGCTT
                      ____________________________________________________________
consensus             CATTGCCAATTCTCTTAGCTGCTGTTTTTTGTAAAAATCTTGAGACTCATCCACAGGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          GAGAAGATCTTCAAGGATCTCGCGTGCTTGCATTAATCGAGCATCAATTATCTCCAATGG
JMFN020I20+           GAGAAGATCTTCAAGGATCTCGCGTGCTTGCATTAATCGAGCATCAATTATCTCCAATGG
                      ____________________________________________________________
consensus             GAGAAGATCTTCAAGGATCTCGCGTGCTTGCATTAATCGAGCATCAATTATCTCCAATGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF007G08-          CAGTTCTGCCTC                                                
JMFN020I20+           CAGTTCTGCCTCTAAAATTAAATGAAGGGGCTCGTTTAGGTGCTCAAACCCAGGTTTACC
                      ____________________________________________________________
consensus             CAGTTCTGCCTCTAAAATTAAATGAAGGGGCTCGTTTAGGTGCTCAAACCCAGGTTTACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020I20+           TCTCATCATCTCTTCCTTTGTTGGATCTTTGATGCTTCCATGTCCTCTAATAAGAACACG
                      ____________________________________________________________
consensus             TCTCATCATCTCTTCCTTTGTTGGATCTTTGATGCTTCCATGTCCTCTAATAAGAACACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020I20+           GCAGTCAGTACTTGCTTCAACTCGCTTAAGAGAGTTCCCTCTAGGACCAAGGAGGCGACC
                      ____________________________________________________________
consensus             GCAGTCAGTACTTGCTTCAACTCGCTTAAGAGAGTTCCCTCTAGGACCAAGGAGGCGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020I20+           AACGAAATTGTAACTGGGAAACAGATCCACGGGAATATCAATTCTCATCGTTCGCCTAAC
                      ____________________________________________________________
consensus             AACGAAATTGTAACTGGGAAACAGATCCACGGGAATATCAATTCTCATCGTTCGCCTAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN020I20+           AATACGGCCAGACGAGCTACTTTGACTACTGCGCCAGTTTGACTAGACAAGGGCTCCGTA
                      ____________________________________________________________
consensus             AATACGGCCAGACGAGCTACTTTGACTACTGCGCCAGTTTGACTAGACAAGGGCTCCGTA