Contig 011691:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026K20Sequence498011691 (4)ref|XP_009601289.1|3e-50PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana tomentosifo
JMFN014L19Sequence609011691 (4)ref|XP_009601289.1|2e-56PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana tomentosifo
JMSF052L18Sequence570011691 (4)ref|XP_009601289.1|3e-53PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana tomentosifo744011691 (4)ref|XP_009601289.1|2e-55PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana tomentosifo

Alignment

This contig is upended


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JMSF052L18-                    GGGAGTAGTCGCTACTTCCCCTCTGCCCCTTTCTCTCTCGCGATTCCCTTC
rJMSF052L18+                   GGGAGTAGTCGCTACTTCCCCTCTGCCCCTTTCTCTCTCGCGATTCCCTTC
                      ____________________________________________________________
consensus                      GGGAGTAGTCGCTACTTCCCCTCTGCCCCTTTCTCTCTCGCGATTCCCTTC
 
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JMSF052L18-           TCTTCTCCATTCTTTGTCTCTCAGATCTCACTCATCTCAGTATATCACCCATCACTCTCT
rJMSF052L18+          TCTTCTCCATTCTTTGTCTCTCAGATCTCACTCATCTCAGTATATCACCCATCACTCTCT
                      ____________________________________________________________
consensus             TCTTCTCCATTCTTTGTCTCTCAGATCTCACTCATCTCAGTATATCACCCATCACTCTCT
 
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JMSF052L18-           CGCCTTCTCCAATCTCCGCCTCTCACCTCTCGCACTCTCTCCGCGGCTCCGCCTCTCCGC
rJMSF052L18+          CGCCTTCTCCAATCTCCGCCTCTCACCTCTCGCACTCTCTCCGCGGCTCCGCCTCTCCGC
                      ____________________________________________________________
consensus             CGCCTTCTCCAATCTCCGCCTCTCACCTCTCGCACTCTCTCCGCGGCTCCGCCTCTCCGC
 
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JMSF052L18-           CGGAATACGACTCTGACTCCGGTCCTCTTGAGTCTCGCCTTCGCTCAGGGCTCTCGGCCA
rJMSF052L18+          CGGAATACGACTCTGACTCCGGTCCTCTTGAGTCTCGCCTTCGCTCAGGGCTCTCGGCCA
                      ____________________________________________________________
consensus             CGGAATACGACTCTGACTCCGGTCCTCTTGAGTCTCGCCTTCGCTCAGGGCTCTCGGCCA
 
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JMSF052L18-           CTCGAAATGGTTATTCCTCCACCAGTTAGACCAGAAAGAGTCACAAAGTTCCTCAAACCT
rJMFF026K20+           TCGAAATGGTTATTCCTCCACCAGTTAGACCAGAAAGAGTCACAAAGTTCCTCAAACCT
rJMSF052L18+          CTCGAAATGGTTATTCCTCCACCAGTTAGACCAGAAAGAGTCACAAAGTTCCTCAAACCT
JMFN014L19-              GAAATGGTTATTCCTCCACCAGTTAGACCAGAAAGAGTCACAAAGTTCCTCAAACCT
                      ____________________________________________________________
consensus             CTCGAAATGGTTATTCCTCCACCAGTTAGACCAGAAAGAGTCACAAAGTTCCTCAAACCT
 
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JMSF052L18-           TATGTCTTGAGGATGCACTTCACGAACAAGTATGTGAATGCTCAAGTAGTCCACACACCA
rJMFF026K20+          TATGTCTTGAGGATGCACTTCACGAACAAGTATGTGAATGCTCAAGTAGTCCNCACACCA
rJMSF052L18+          TATGTCTTGAGGATGCACTTCACGAACAAGTATGTGAATGCTCAAGTAGTCCACACACCA
JMFN014L19-           TATGTCTTGAGGATGCACTTCACGAACAAGTATGTGAATGCTCAAGTAGTCCACACACCA
                      ____________________________________________________________
consensus             TATGTCTTGAGGATGCACTTCACGAACAAGTATGTGAATGCTCAAGTAGTCCACACACCA
 
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JMSF052L18-           AGTGCAACAGTTGCCACAGCTGCCAGCACACAAGAGAAGAGCTTGAGGTTGGGGATGATA
rJMFF026K20+          AGTGCAACAGTTGCCACAGCTGCCAGCACACAAGAGAAGAGCTTGAGGTTGGGGATGATA
rJMSF052L18+          AGTGCAACAGTTGCCACAGCTGCCAGCACACAAGAGAAGAGCTTGAGGTTGGGGATGATA
JMFN014L19-           AGTGCAACAGTTGCCACAGCTGCCAGCACACAAGAGAAGAGCTTGAGGTTGGGGATGATA
                      ____________________________________________________________
consensus             AGTGCAACAGTTGCCACAGCTGCCAGCACACAAGAGAAGAGCTTGAGGTTGGGGATGATA
 
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JMSF052L18-           GAAGCGAAAGAAAACACCCGGGATGTTGCTGCTGCTGCAAAAATAGGCAAGCTGCTGGGG
rJMFF026K20+          GAAGCGAAAGAAAACACCCGGGATGTTGCTGNTGCTGCAAAAATAGGCAAGCTGCTGGGG
rJMSF052L18+          GAAGCGAAAGAAAACACCCGGGATGTTGCTGCTGCTGCAAAAATAGGCAAGCTGCTGGGG
JMFN014L19-           GAAGCGAAAGAAAACACCCGGGATGTTGCTGCTGCTGCAAAAATAGGCAAGCTGCTGGGG
                      ____________________________________________________________
consensus             GAAGCGAAAGAAAACACCCGGGATGTTGCTGCTGCTGCAAAAATAGGCAAGCTGCTGGGG
 
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JMSF052L18-           GAGCGACTGCGGGTCAAAGGCATTCCTGCTGTTTCTGTTTTCTTCAAAAAGGATCAGAGA
rJMFF026K20+          GAGNGANTGCGGGTCAAAGGCATTCCTGCTGTTTNTGTNTTCTTCAAAAAGGATCAGAGA
rJMSF052L18+          GAGCGACTGCGGGTCAAAGGCATTCCTGCTGTTTCTGTTTTCTTCAAAAAGGATCAGAGA
JMFN014L19-           GAGCGACTGCGGGTCAAAGGCATTCCTGCTGTTTCTGTTTTCTTCAAAAAGGATCAGAGA
                      ____________________________________________________________
consensus             GAGCGACTGCGGGTCAAAGGCATTCCTGCTGTTTCTGTTTTCTTCAAAAAGGATCAGAGA
 
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JMSF052L18-           TATCATGGAAAGGTCAAAGCTGTGATTGATTCCATCAGG                     
rJMFF026K20+          TATCATGGAAAGGTCAAAGCTGTGATTGATTCCATCAGGGGAGAAGGAATTGAATTGGTT
rJMSF052L18+          TATCATGGAAAGGTCAAAGCTGTGATTGATTCCATCAGGGGAGAAGGAATTGAATTGGTT
JMFN014L19-           TATCATGGAAAGGTCAAAGCTGTGATTGATTCCATCAGGGGAGAAGGAATTGAATTGGTT
                      ____________________________________________________________
consensus             TATCATGGAAAGGTCAAAGCTGTGATTGATTCCATCAGGGGAGAAGGAATTGAATTGGTT
 
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rJMFF026K20+          TGAATTTGGATTCTGAT                                           
rJMSF052L18+          TGAATTTGGATTCTGAT                                           
JMFN014L19-           TGAATTTGGATTCTGATGAATAATTCCCAGTTTATTTCTTGAACAATTTATGCTAAAAAA
                      ____________________________________________________________
consensus             TGAATTTGGATTCTGATGAATAATTCCCAGTTTATTTCTTGAACAATTTATGCTAAAAAA
 
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JMFN014L19-           CTTGGGTTATTTGATTCAAATGCATCGGGGGGAAGGGAAACTGGAAATGTAATATTTTTT
                      ____________________________________________________________
consensus             CTTGGGTTATTTGATTCAAATGCATCGGGGGGAAGGGAAACTGGAAATGTAATATTTTTT