Contig 011689:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013H19Sequence573011689 (6)gb|KGN49564.1|5e-64hypothetical protein Csa_5G002590 [Cucumis sativus]
JMSF006I06Sequence332012202 (5)emb|CAN77028.1|7e-32hypothetical protein VITISV_015339 [Vitis vinifera]549011689 (6)ref|XP_007041452.1|2e-83Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF010J06Sequence332012202 (5)emb|CAN77028.1|3e-16hypothetical protein VITISV_015339 [Vitis vinifera]769011689 (6)ref|XP_007041452.1|4e-135Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF033B18Sequence697012202 (5)ref|XP_006361853.1|6e-99PREDICTED: serine--tRNA ligase-like [Solanum tuberosum]755011689 (6)ref|XP_007041452.1|1e-115Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF036E22Sequence699012202 (5)ref|XP_009784692.1|2e-99PREDICTED: serine--tRNA ligase [Nicotiana sylvestris]687011689 (6)ref|XP_007041452.1|5e-99Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9
JMSF052G03Sequence642012202 (5)ref|XP_010255943.1|6e-67PREDICTED: serine--tRNA ligase-like [Nelumbo nucifera]936011689 (6)ref|XP_007041452.1|6e-174Seryl-tRNA synthetase / serine--tRNA ligase isoform 1 [Theobroma cacao] gb|EOX9

Alignment

This contig is upended


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rJMSF052G03+                                     AATCATGTTTGCCCTTGATTTTTTGAGAAAAAG
                      ____________________________________________________________
consensus                                        AATCATGTTTGCCCTTGATTTTTTGAGAAAAAG
 
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rJMSF052G03+          GGGATACTCTCGGTTGCAAACTCCTTTCTTCATGAGGCAAGATATCATGGGAAAATGTGC
                      ____________________________________________________________
consensus             GGGATACTCTCGGTTGCAAACTCCTTTCTTCATGAGGCAAGATATCATGGGAAAATGTGC
 
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rJMSF052G03+          TCAACTAGCACAATTTGATGAGGAACTCTACAAGGTAACTGGTGAGGGAGATGACAAATA
                      ____________________________________________________________
consensus             TCAACTAGCACAATTTGATGAGGAACTCTACAAGGTAACTGGTGAGGGAGATGACAAATA
 
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rJMSF052G03+          TCTAATTGCGACATCTGAACAGCCTCTGTGTGCTTATCATATGGATGATTGGATTCATCC
rJMSF010J06+                         TGAACAGCCTCTGTGTGCTTATCATATGGATGATTGGATTCATCC
                      ____________________________________________________________
consensus             TCTAATTGCGACATCTGAACAGCCTCTGTGTGCTTATCATATGGATGATTGGATTCATCC
 
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rJMSF052G03+          CTCAGAGCTACCATTAAGATATGCAGGATATTCGACTTGCTTTCGTAAAGAAGCTGGTTC
rJMSF010J06+          CTCAGAGCTACCATTAAGATATGCAGGATATTCGACTTGCTTTCGTAAAGAAGCTGGTTC
rJMSF036E22+                                                     CGTAAAGAAGCTGGTTC
rJMSF033B18+                            ATATGCAGGATNTTCGACTTGCTTTCGTAAAGAAGCTGGTTC
                      ____________________________________________________________
consensus             CTCAGAGCTACCATTAAGATATGCAGGATATTCGACTTGCTTTCGTAAAGAAGCTGGTTC
 
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rJMSF052G03+          TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
rJMSF010J06+          TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
rJMSF036E22+          TCATGGCCGTGACACTCTTGGGA-TTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
rJMSF033B18+          TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
                      ____________________________________________________________
consensus             TCATGGCCGTGACACTCTTGGGATTTTTCGTGTTCATCAATTTGAAAAAGTTGAGCAATT
 
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rJMSF052G03+          TTGTATAACTAGCCCAAATGGCAATGACTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF010J06+          TTGTATAACTAGCCCAAATGGCAATGACTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF036E22+          TTGTATAACTAGCCCAAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF006I06+                         AAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
rJMSF033B18+          TTGTATAACTAGCCCAAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
                      ____________________________________________________________
consensus             TTGTATAACTAGCCCAAATGGCAATGATTCCTGGGACATGCATGAGGAGATGTTCAAGAA
 
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rJMSF052G03+          CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF010J06+          CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF036E22+          CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF006I06+          CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
rJMSF033B18+          CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
JMFN013H19-                                      GATTCCCTATCATGTTGTTT-AATTGTTTCTGG
                      ____________________________________________________________
consensus             CTCTGAGGAATTCTTCCAGCAGCTAAAGATTCCCTATCATGTTGTTTCAATTGTTTCTGG
 
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rJMSF052G03+          TGCATTAAATGATGCTGCTGCAAAGAAGTACGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF010J06+          TGCATTAAATGATGCTGCTGCAAAGAAGTACGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF036E22+          TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF006I06+          TGCANTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
rJMSF033B18+          TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
JMFN013H19-           TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
                      ____________________________________________________________
consensus             TGCATTAAATGATGCTGCTGCAAAAAAGTATGATTTAGAAGGCTGGTTCCCTGCCTCTGC
 
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rJMSF052G03+          CACACACAGAGAACTTGTTTCATGCTCAAACTGCACCGATTACCAATCAAGAAGATTGGA
rJMSF010J06+          CACACACAGAGAACTTGTTTCATGCTCAAACTGCACCGATTACCAATCAAGAAGATTGGA
rJMSF036E22+          CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
rJMSF006I06+          CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTNCCAATCAAGAAGATTGGA
rJMSF033B18+          CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
JMFN013H19-           CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
                      ____________________________________________________________
consensus             CACACATAGAGAACTTGTTTCATGCTCAAACTGCACGGATTACCAATCAAGAAGATTGGA
 
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rJMSF052G03+          AATTCGGTATGGGCAGAAAAAGGGAAATGAGCAATCGGCGAAACAATATGTTCATTTATT
rJMSF010J06+          AATTCGGTATGGGCAGAAAAAGGGAAATGAGCAATCGGCGAAACAATATGTTCATTTATT
rJMSF036E22+          AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
rJMSF006I06+          AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
rJMSF033B18+          AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
JMFN013H19-           AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
                      ____________________________________________________________
consensus             AATTCGGTATGGGCAGAAAAAGGGAAATGACCAATCGGCGAAACAATATGTTCATTTATT
 
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rJMSF052G03+          GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF010J06+          GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF036E22+          GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF006I06+          GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
rJMSF033B18+          GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
JMFN013H19-           GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
                      ____________________________________________________________
consensus             GAACTCTACTTTGACGGCAACAGAGAGGACTCTCTGCTGTATCCTCGAGAATTACCAGAA
 
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rJMSF052G03+          GAAGGATGGGGTGGAGGTCCCCCAAGTATTGCAACCTTACATGGGTGGAGTCACATTCCT
rJMSF010J06+          GAAGGATGGGGTGGAGGTCCCCCAAGTATTGCAACCTTACATGGGTGGAGTCACATTCCT
rJMSF036E22+          GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
rJMSF006I06+          GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
rJMSF033B18+          GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
JMFN013H19-           GGAAGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
                      ____________________________________________________________
consensus             GGAGGATGGGGTGGAGGTCCCCGAAGTATTGCAACCTTACATGGGTGGAGTGACATTCCT
 
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rJMSF052G03+          TCCGTTCAAGACCGTCCCAACTGGTAAAGATAAAAAATCCAAATGACCATTTACTTACTT
rJMSF010J06+          TCCGTTCAAGACCGTCCCAACTGGTAAAGATAAAAAATCCAAATGACCATTTACTTACTT
rJMSF036E22+          CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
rJMSF006I06+          CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
rJMSF033B18+          CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
JMFN013H19-           CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
                      ____________________________________________________________
consensus             CCCGTTCAAGAGCGTCCCAACTGGTAAAGATAAAAAATCCAAATGAGCATTT----ACTT
 
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rJMSF052G03+          TCTAACGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAG          
rJMSF010J06+          TCTAACGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAG          
rJMSF036E22+          TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
rJMSF006I06+          TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
rJMSF033B18+          TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
JMFN013H19-           TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
                      ____________________________________________________________
consensus             TCTAATGCCTTCAAACTAGAAACAAGGCTTTAAGGAAACACTATGTCAAGCTGTAGCTCG
 
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rJMSF036E22+          GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
rJMSF006I06+          GTTTTAGAAGATATAACTTNAGAATGAT                                
rJMSF033B18+          GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
JMFN013H19-           GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
                      ____________________________________________________________
consensus             GTTTTAGAAGATATAACTTAAGAATGATTGTTTGTGATCCAAATATCCAATGCCCCTTGA
 
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rJMSF036E22+          GACTGATT                                                    
rJMSF033B18+          GACTGATTTGAGAAGCTGTCGTTGCACAGTAATGGCTTACTGCGGAAATATTTCAGA   
JMFN013H19-           GACTGATTTGAGAAGCTGTCGTTGCACAGTAATGGCTTACTGCGGAAATATTTCAGATAC
                      ____________________________________________________________
consensus             GACTGATTTGAGAAGCTGTCGTTGCACAGTAATGGCTTACTGCGGAAATATTTCAGATAC