Contig 011687:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF005L16-                                                                AATGTC
                      ____________________________________________________________
consensus                                                                   AATGTC
 
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rJMSF005L16-          TTAAGATAATTAAAATACCCTAAATAACATTTTGAATATATTAGCTCCTAGAACATATAC
                      ____________________________________________________________
consensus             TTAAGATAATTAAAATACCCTAAATAACATTTTGAATATATTAGCTCCTAGAACATATAC
 
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rJMSF005L16-          ATCCATCAAAAACCCTATAATTCAGGTTCAATTTTCACTGGAAATTGGGCAGTCAATCCC
                      ____________________________________________________________
consensus             ATCCATCAAAAACCCTATAATTCAGGTTCAATTTTCACTGGAAATTGGGCAGTCAATCCC
 
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rJMSF005L16-          AGCCATGCCTTGTTCTCTTCTTCCTCATTCTTCCCCTTCTGGTATGGTGCTGCCTTGGAA
                      ____________________________________________________________
consensus             AGCCATGCCTTGTTCTCTTCTTCCTCATTCTTCCCCTTCTGGTATGGTGCTGCCTTGGAA
 
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rJMSF005L16-          GTAATCCTATCCTTTCTCTTCTCCAAGAACCTGGCAAGGGAACTCCTCCTAGCAATAGGC
JMFN043I12+                                         CTGGCAAGGGAACTCCTCCTAGCAATAGGC
JMFN012H01+                                                   AACTCCTCCTAGCAATAGGC
                      ____________________________________________________________
consensus             GTAATCCTATCCTTTCTCTTCTCCAAGAACCTGGCAAGGGAACTCCTCCTAGCAATAGGC
 
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rJMSF005L16-          AAGTCAGAATAGGCTCTTTGGTTCCCAAAACTGGGGACAACCTTAGAAACAGCTGGTC  
JMFN043I12+           AAGTCAGAATAGGCTCTTTGGTTCCCAAAACTGGGGACAACCTTAGAAACAGCTGGTCTT
JMFN012H01+           AAGTCAGAATAGGCTCTTTGGTTCCCAAAACTGGGGACAACCTTAGAAACAGCTGGTCTT
                      ____________________________________________________________
consensus             AAGTCAGAATAGGCTCTTTGGTTCCCAAAACTGGGGACAACCTTAGAAACAGCTGGTCTT
 
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JMFN043I12+           GGAACCACAGAATTGACATCAGCACAAGGTAAGATGTTGGGGGTTTGGGTGTTGGTAGCC
JMFN012H01+           GGAACCACAGAATTGACATCAGCACAAGGTAAGATGTTGGGGGTTTGGGTGTTGGTAGCC
                      ____________________________________________________________
consensus             GGAACCACAGAATTGACATCAGCACAAGGTAAGATGTTGGGGGTTTGGGTGTTGGTAGCC
 
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JMFN043I12+           ATAGCAATCAGCTCCTTAGCCTTCTCAACTGGAAACTCATTGAACATGATCATTTGACCA
JMFN012H01+           ATAGCAATCAGCTCCTTAGCCTTCTCAACTGGAAACTCATTGAACATGATCATTTGACCA
                      ____________________________________________________________
consensus             ATAGCAATCAGCTCCTTAGCCTTCTCAACTGGAAACTCATTGAACATGATCATTTGACCA
 
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JMFN043I12+           TTATAGAAGATTGTCATTGGTGCCCTTTCTGGATCTGCCTTTCCCAAACTGGAATCAATC
JMFN012H01+           TTATAGAAGATTGTCATTGGTGCCCTTTCTGGATCTGCCTTTCCCAAACTGGAATCAATC
                      ____________________________________________________________
consensus             TTATAGAAGATTGTCATTGGTGCCCTTTCTGGATCTGCCTTTCCCAAACTGGAATCAATC
 
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JMFN043I12+           TTGTTCTGGGTAGGAAACAAGTTCAGGGGTTTGAGATCCGAATTCTGGGCCGGTTTCTCA
JMFN012H01+           TTGTTCTGGGTAGGAAACAAGTTCAGGGGTTTGAGATCCGAATTCTGGGCCGGTTTCTCA
                      ____________________________________________________________
consensus             TTGTTCTGGGTAGGAAACAAGTTCAGGGGTTTGAGATCCGAATTCTGGGCCGGTTTCTCA
 
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JMSF005L16+                                         CCGAGGCTGAGATCTCCAAAAGAGCCCTTC
JMFN043I12+           AACGTTGGGAGCAGATTCATCGTGGGTGTCCCGAGGCTGAGATCTCCAAAAGAGCCCTTC
JMFN012H01+           AACGTTGGGAGCAGATTCATCGTGGGTGTCCCGAGGCTGAGATCTCCAAAAGAGCCCTTC
                      ____________________________________________________________
consensus             AACGTTGGGAGCAGATTCATCGTGGGTGTCCCGAGGCTGAGATCTCCAAAAGAGCCCTTC
 
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JMSF005L16+           TCCTTCAAGTACTGGCTCAAAAGCGCACACGTGTGGGAGAAGTTGGACCTCTGGCCGGAA
JMFN043I12+           TCCTTCAAGTACTGGCTCAAAAGCGCACACGTGTGGGAGAAGTTGGACCTCTGGCCGGAA
JMFN012H01+           TCCTTCAAGTACTGGCTCAAAAGCGCACACGTGTGGGAGAAGTTGGACCTCTGGCCGGAA
                      ____________________________________________________________
consensus             TCCTTCAAGTACTGGCTCAAAAGCGCACACGTGTGGGAGAAGTTGGACCTCTGGCCGGAA
 
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JMSF005L16+           AATCTCCCGGAATCCATAGTTTCCGATGAACCCATATCTTC                   
JMFN043I12+           AATCTCCCGGAATCCATAGTTTCCGATGAACCCATATCTTC                   
JMFN012H01+           AATCTCCCGGAATCCATAGTTTCCGATGAACCCATATCTTCAAACAAACAAAAAAAGCTG
                      ____________________________________________________________
consensus             AATCTCCCGGAATCCATAGTTTCCGATGAACCCATATCTTCAAACAAACAAAAAAAGCTG
 
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JMFN012H01+           TTTTTCCCAACTTTTAACCGGAAAATTCAGAACTTATCTGCAATAATGGCTTGTCTTCTT
                      ____________________________________________________________
consensus             TTTTTCCCAACTTTTAACCGGAAAATTCAGAACTTATCTGCAATAATGGCTTGTCTTCTT
 
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JMFN012H01+           CTTCTTCCTGAAGATGCTTTCTGGGTTTCTGGGTTTCTGCAGAGCAAATAAATATATGTG
                      ____________________________________________________________
consensus             CTTCTTCCTGAAGATGCTTTCTGGGTTTCTGGGTTTCTGCAGAGCAAATAAATATATGTG