Contig 011685:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003F05Sequence561011685 (7)
JMFN011J10Sequence544011685 (7)
JMFN013E12Sequence541011685 (7)
JMFN019C17Sequence520011685 (7)
JMFN033F14Sequence526011685 (7)
JMFN040L11Sequence474011685 (7)
JMFN042L02Sequence532011685 (7)

Alignment

This contig is upended


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JMFN003F05+                              GAAGCAAAGCAGGGGACGAAATTATCACAAGAATAACGGAT
                      ____________________________________________________________
consensus                                GAAGCAAAGCAGGGGACGAAATTATCACAAGAATAACGGAT
 
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JMFN003F05+           TACATACATAGCTCAAAAAATTGAGTATCACCAACGTGAATATGTTCAAACGTACAATCA
                      ____________________________________________________________
consensus             TACATACATAGCTCAAAAAATTGAGTATCACCAACGTGAATATGTTCAAACGTACAATCA
 
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JMFN003F05+           TAATAATATCAAAGAATTAAAACAGXXXXXXXXXXXXXXXXXXXXXXGGAGAAAATACAG
JMFN042L02+                                                          GGAGAAAATACAG
JMFN033F14+                                                          GGAGAAAATACAG
JMFN040L11+                                                          GGAGAAAATACAG
JMFN013E12+                                                          GGAGAAAATACAG
JMFN019C17+                                                          GGAGAAAATACAG
JMFN011J10+                                                          GGAGAAAATACAG
                      ____________________________________________________________
consensus             TAATAATATCAAAGAATTAAAACAGNNNNNNNNNNNNNNNNNNNNNNGGAGAAAATACAG
 
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JMFN003F05+           AATCCGAAATGAATCGAATCGAATCTCCTTTCTAAAAGCAAATGAAAATGACCTAAACAT
JMFN042L02+           AATCCGAAATGAATCGAATCGAATCTCCTTTCTAAAAGCAAATGAAAATGACCTAAACAT
JMFN033F14+           AATCCGAAATGAATCGAATCGAATCTCCTTTCTAAAAGCAAATGAAAATGACCTAAACAT
JMFN040L11+           AATCCGAAATGAATCGAATCGAATCTCCTTTCTAAAAGCAAATGAAAATGACCTAAACAT
JMFN013E12+           AATCCGAAATGAATCGAATCGAATCTCCTTTCTAAAAGCAAATGAAAATGACCTAAACAT
JMFN019C17+           AATCCGAAATGAATCGAATCGAATCTCCTTTCTAAAAGCAAATGAAAATGACCTAAACAT
JMFN011J10+           AATCCGAAATGAATCGAATCGAATCTCCTTTCTAAAAGCAAATGAAAATGACCTAAACAT
                      ____________________________________________________________
consensus             AATCCGAAATGAATCGAATCGAATCTCCTTTCTAAAAGCAAATGAAAATGACCTAAACAT
 
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JMFN003F05+           GATGCACGAGTCATGACGCACCAAAGGCTAGTCAGATCGGAAACTAAAATCCAGGAGAAG
JMFN042L02+           GATGCACGAGTCATGACGCACCAAAGGCTAGTCAGATCGGAAACTAAAATCCAGGAGAAG
JMFN033F14+           GATGCACGAGTCATGACGCACCAAAGGCTAGTCAGATCGGAAACTAAAATCCAGGAGAAG
JMFN040L11+           GATGCACGAGTCATGACGCACCAAAGGCTAGTCAGATCGGAAACTAAAATCCAGGAGAAG
JMFN013E12+           GATGCACGAGTCATGACGCACCAAAGGCTAGTCAGATCGGAAACTAAAATCCAGGAGAAG
JMFN019C17+           GATGCACGAGTCATGACGCACCAAAGGCTAGTCAGATCGGAAACTAAAATCCAGGAGAAG
JMFN011J10+           GATGCACGAGTCATGACGCACCAAAGGCTAGTCAGATCGGAAACTAAAATCCAGGAGAAG
                      ____________________________________________________________
consensus             GATGCACGAGTCATGACGCACCAAAGGCTAGTCAGATCGGAAACTAAAATCCAGGAGAAG
 
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JMFN003F05+           AAGCTCGGCCACATCTCCTCCCATCTCGGAAACGAGTTTAGAAGAGAAATCCGAATGCGA
JMFN042L02+           AAGCTCGGCCACATCTCCTCCCATCTCGGAAACGAGTTTAGAAGAGAAATCCGAATGCGA
JMFN033F14+           AAGCTCGGCCACATCTCCTCCCATCTCGGAAACGAGTTTAGAAGAGAAATCCGAATGCGA
JMFN040L11+           AAGCTCGGCCACATCTCCTCCCATCTCGGAAACGAGTTTAGAAGAGAAATCCGAATGCGA
JMFN013E12+           AAGCTCGGCCACATCTCCTCCCATCTCGGAAACGAGTTTAGAAGAGAAATCCGAATGCGA
JMFN019C17+           AAGCTCGGCCACATCTCCTCCCATCTCGGAAACGAGTTTAGAAGAGAAATCCGAATGCGA
JMFN011J10+           AAGCTCGGCCACATCTCCTCCCATCTCGGAAACGAGTTTAGAAGAGAAATCCGAATGCGA
                      ____________________________________________________________
consensus             AAGCTCGGCCACATCTCCTCCCATCTCGGAAACGAGTTTAGAAGAGAAATCCGAATGCGA
 
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JMFN003F05+           GAGCGGCGAAGGAGGCAACGGCGGCGGGGACGAAGGCGGCGGCGTCGGAGGCCGGGCCGG
JMFN042L02+           GAGCGGCGAAGGAGGCAACGGCGGCGGGGACGAAGGCGGCGGCGTCGGAGGCCGGGCCGG
JMFN033F14+           GAGCGGCGAAGGAGGCAACGGCGGCGGGGACGAAGGCGGCGGCGTCGGAGGCCGGGCCGG
JMFN040L11+           GAGCGGCGAAGGAGGCAACGGCGGCGGGGACGAAGGCGGCGGCGTCGGAGGCCGGGCCGG
JMFN013E12+           GAGCGGCGAAGGAGGCAACGGCGGCGGGGACGAAGGCGGCGGCGTCGGAGGCCGGGCCGG
JMFN019C17+           GAGCGGCGAAGGAGGCAACGGAGGCGGGGACGAAGGCGGCGGCGTCGGAGGCCGGGCCGG
JMFN011J10+           GAGCGGCGAAGGAGGCAACGGCGGCGGGGACGAAGGCGGCGGCGTCGGAGGCCGGGCCGG
                      ____________________________________________________________
consensus             GAGCGGCGAAGGAGGCAACGGCGGCGGGGACGAAGGCGGCGGCGTCGGAGGCCGGGCCGG
 
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JMFN003F05+           GAGCGGGAGCAGGGACATCCGCCGCCGAGGCGATCTGGACGGCGGAGAGCGCCACCAGAG
JMFN042L02+           GAGCGGGAGCAGGGACATCGGCCGCCGAGGCGATCTGGACGGCGGAGAGCGCCACCAGAG
JMFN033F14+           GAGCGGGAGCAGGGACATCGGCCGCCGAGGCGATCTGGACGGCGGAGAGCGCCACCAGAG
JMFN040L11+           GAGCGGGAGCAGGGACATCGGCCGCCGAGGCGATCTGGACGGCGGAGAGCGCCACCAGAG
JMFN013E12+           GAGCGGGAGCAGGGACATCGGCCGCCGAGGCGATCTGGACGGCGGAGAGCGCCACCAGAG
JMFN019C17+           GAGCGGGAGCAGGGACATCGGCCGCCGAGGCGATCTGGACGGCGGAGAGCGCCACCAGAG
JMFN011J10+           GAGCGGGAGCAGGGACATCGGCCGCCGAGGCGATCTGGACGGCGGAGAGCGCCACCAGAG
                      ____________________________________________________________
consensus             GAGCGGGAGCAGGGACATCGGCCGCCGAGGCGATCTGGACGGCGGAGAGCGCCACCAGAG
 
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JMFN003F05+           CCACCAGAAGAGCGGCGAAGAGGACGTTGATCTTCCTTGCCTCCATTTCTGAATCGCGAG
JMFN042L02+           CCACCAGAAGAGCGGCGAAGAGGACGTTGATCTTCCTTGCCTCCATTTCTGAATCGCGAG
JMFN033F14+           CCACCAGAAGAGCGGCGAAGAGGACGTTGATCTTCCTTGCCTCCATTTCTGAATCGCGAG
JMFN040L11+           CCACCAGAAGAGCGGCGAAGAGGACGTTGATCTTCCTTGCCTCCATTTCTGAATCGCGAG
JMFN013E12+           CCACCAGAAGAGCGGCGAAGAGGACGTTGATCTTCCTTGCCTCCATTTCTGAATCGCGAG
JMFN019C17+           CCACCAGAAGAGCGGCGAAGAGGACGTTGATCTTCCTTGCCTCCATTTCTGAATCGCGAG
JMFN011J10+           CCACCAGAAGAGCGGCGAAGAGGACGTTGATCTTCCTTGCCTCCATTTCTGAATCGCGAG
                      ____________________________________________________________
consensus             CCACCAGAAGAGCGGCGAAGAGGACGTTGATCTTCCTTGCCTCCATTTCTGAATCGCGAG
 
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JMFN003F05+           CGAAATGCAGAATTCTGAGAGGGATTTCTCGGAGGCTTAG                    
JMFN042L02+           CGAAATGCAGAATTCTGAGAGGGATTTCTCGGAGGCTTAGAAGAGAGAAAA         
JMFN033F14+           CGAAATGCAGAATTCTGAGAGGGATTTCTCGGAGACTTAGAAGAGAGAAAA         
JMFN040L11+           CGAAATGCAGAATTCTGAGAGG                                      
JMFN013E12+           CGAAATGCAGAATTCTGAGAGGGATTTCTCGGAGGCTTAGAAGAGAGAAAA         
JMFN019C17+           CGAAATGCAGAATTCTGAGAGGGATTTCTCGGAGGCTTAGAAGAGAGAAAA         
JMFN011J10+           CGAAATGCAGAATTCTGAGAGGGATTTCTCGGAGGCTTAGAAGAGAGAAAAGGGAAGGAA
                      ____________________________________________________________
consensus             CGAAATGCAGAATTCTGAGAGGGATTTCTCGGAGGCTTAGAAGAGAGAAAAGGGAAGGAA