| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010A10 | Sequence | 501 | 011677 (8) | emb|CDO97835.1| | 6e-32 | unnamed protein product [Coffea canephora] | 479 | 011677 (8) | emb|CDO97835.1| | 5e-32 | unnamed protein product [Coffea canephora] |
| JMFF010A22 | Sequence | 501 | 011677 (8) | emb|CDO97835.1| | 4e-31 | unnamed protein product [Coffea canephora] | 464 | 011677 (8) | emb|CDO97835.1| | 4e-32 | unnamed protein product [Coffea canephora] |
| JMFF031B04 | Sequence | 479 | 011677 (8) | emb|CDO97835.1| | 5e-32 | unnamed protein product [Coffea canephora] | 448 | 011677 (8) | emb|CDO97835.1| | 3e-32 | unnamed protein product [Coffea canephora] |
| JMFN008D05 | Sequence | 470 | 011677 (8) | emb|CDO97835.1| | 3e-31 | unnamed protein product [Coffea canephora] | |||||
| JMSF021G07 | Sequence | 620 | 005069 (9) | ref|XP_004236894.1| | 1e-68 | PREDICTED: outer envelope pore protein 37, chloroplastic [Solanum lycopersicum] | 431 | 011677 (8) | emb|CDO97835.1| | 2e-32 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF010A22+ GTGTCGATCACTTCTCAGTCTCCTACATTG
JMFF010A10- GTGTCGATCACTTCTCAGTCTCCTACATTG
JMFF010A22- GTGTCGATCACTTCTCAGTCTCCTACATTG
rJMSF021G07+ GTCGATCACTTCTCAGTCTCCTACATTG
rJMFF010A10+ GTGTCGATCACTTCTCAGTCTCCTACATTG
rJMFF031B04+ GTCGTTCACTTCTCAGTCTCCTACATTG
JMFF031B04- GTCGTTCACTTCTCAGTCTCCTACATTG
____________________________________________________________
consensus GTGTCGATCACTTCTCAGTCTCCTACATTG
. : . : . : . : . : . :
rJMFF010A22+ ATCGAAAGCTACGCAGTAACGCAGAGCAGAAGAGCATGGGTCACTCCAACATCTGGAACG
JMFF010A10- ATCGAAAGCTACGCAGTAACGCAGAGCAGAAGAGCATGGGTCACTCCAACATCTGGAACG
JMFF010A22- ATCGAAAGCTACGCAGTAACGCAGAGCAGAAGAGCATGGGTCACTCCAACATCTGGAACG
rJMSF021G07+ ATCGAAAGCTACGCAGTAACGCAGAGCAGAAGAGCATGGGTCACTCCAACATCTGGAACG
rJMFF010A10+ ATCGAAAGCTACGCAGTAACGCAGAGCAGAAGAGCATGGGTCACTCCAACATCTGGAACG
rJMFF031B04+ ATCGAAAGCTACGCAGTAACGCAGAGCAGAAGAGCATGGGTCACTCCAACATCTGGAACG
JMFF031B04- ATCGAAAGCTACGCAGTAACGCAGAGCAGAAGAGCATGGGTCACTCCAACATCTGGAACG
JMFN008D05- TACGCAGTAACGCAGAGCAGAAGAGCATGGGTCACTCCAACATCTGGAACG
____________________________________________________________
consensus ATCGAAAGCTACGCAGTAACGCAGAGCAGAAGAGCATGGGTCACTCCAACATCTGGAACG
. : . : . : . : . : . :
rJMFF010A22+ CACACCCCAAGAACTATGGTCCTGGTTCACGGGCTTGCCGCGTGTGCGGGAATTCGCATG
JMFF010A10- CACACCCCAAGAACTATGGTCCTGGTTCACGGGCTTGCCGCGTGTGCGGGAATTCGCATG
JMFF010A22- CACACCCCAAGAACTATGGTCCTGGTTCACGGGCTTGCCGCGTGTGCGNGAATTCGCATG
rJMSF021G07+ CACACCCCAAGAACTATGGTCCTGGTTCACGGGCTTGCCGCGTGTGCGGGAATTCGCATG
rJMFF010A10+ CACACCCCAAGAACTATGGTCCTGGTTCACGGGCTTGCCGCGTGTGCGGGAATTCGCATG
rJMFF031B04+ CACACCCCAAGAACTATGGTCCTGGTTCACGGGCTTGCCGCGTGTGCGGGAATTCGCATG
JMFF031B04- CACACCCCAAGAACTATGGTCCTGGTTCACGGGCTTGCCGCGTGTGCGGGAATTCGCATG
JMFN008D05- CACAGCCCAAGAACTATGGTCCTGGTTCACGGGCTTGCCGCGTGTGCGGGAATTCGCATG
____________________________________________________________
consensus CACACCCCAAGAACTATGGTCCTGGTTCACGGGCTTGCCGCGTGTGCGGGAATTCGCATG
. : . : . : . : . : . :
rJMFF010A22+ GGATAATTAGGAAGTATGGATTGATGTGCTGCAGACAATGCTTCCGCAGTAATGCTAAGG
JMFF010A10- GGATAATTAGGAAGTATGGATTGATGTGCTGCAGACAATGCTTCCGCAGTAATGCTAAGG
JMFF010A22- GGATAATTAGGAAGTATGGATTGATGTGCTGCAGACAATGCTTCCGCAGTAATGCTAAGG
rJMSF021G07+ GGATAATTAGGAAGTATGGATTGATGTGCTGCAGACAATGCTTCCGCAGTAATGCTAAGG
rJMFF010A10+ GGATAATTAGGAAGTATGGATTGATGTGCTGCAGACAATGCTTCCGCAGTAATGCTAAGG
rJMFF031B04+ GGATAATTAGGAAGTATGGATTGATGTGCTGCAGACAATGCTTCCGCAGTAATGCTAAGG
JMFF031B04- GGATAATTAGGAAGTATGGATTGATGTGCTGCAGACAATGCTTCCGCAGTAATGCTAAGG
JMFN008D05- GGATAATTAGGAAGTATGGATTGATGTGCTGCAGACAATGCTTCCGCAGTAATGCTAAGG
____________________________________________________________
consensus GGATAATTAGGAAGTATGGATTGATGTGCTGCAGACAATGCTTCCGCAGTAATGCTAAGG
. : . : . : . : . : . :
rJMFF010A22+ AGATTGGATTTATCAAGTATCGTTAAGGGCAGGATCATTTGTGGTCACTATTGCAATGGA
JMFF010A10- AGATTGGATTTATCAAGTATCGTTAAGGGCAGGATCATTTGTGGTCACTATTGCAATGGA
JMFF010A22- AGATTGGATTTATCAAGTATCGTTAAGGGCAGGATCATTTGTGGTCACTATTGCAATGGA
rJMSF021G07+ AGATTGGATTTATCAAGTATCGTTAAGGGCAGGATCATTTGTGGTCACTATTGCAATGGA
rJMFF010A10+ AGATTGGATTTATCAAGTATCGTTAAGGGCAGGATCATTTGTGGTCACTATTGCAATGGA
rJMFF031B04+ AGATTGGATTTATCAAGTATCGTTAAGGGCAGGATCATTTGTGGTCACTATTGCAATGGA
JMFF031B04- AGATTGGATTTATCAAGTATCGTTAAGGGCAGGATCATTTGTGGTCACTATTGCAATGGA
JMFN008D05- AGATTGGATTTATCAAGTATCGTTAAGGGCAGGATCATTTGTGGTCACTATTGCAATGGA
____________________________________________________________
consensus AGATTGGATTTATCAAGTATCGTTAAGGGCAGGATCATTTGTGGTCACTATTGCAATGGA
. : . : . : . : . : . :
rJMFF010A22+ GGTGAAATTGGATGGCGAAGGAATTGGGGTAGATTTTCATGTAGTAATGCTCTAGTTGTA
JMFF010A10- GGTGAAATTGGATGGCGAAGGAATTGGGGTAGATTTTCATGTAGTAATGCTCTAGTTGTA
JMFF010A22- GGTGAAATTGGATGGCGAAGGAATTGGGGTAGATTTTCATGTAGTAATGCTCTAGTTGTA
rJMSF021G07+ GGTGAAATTGGATGGCGAAGGAATTGGGGTAGATTTTCATGTAGTAATGCTCTAGTTGTA
rJMFF010A10+ GGTGAAATTGGATGGCGAAGGAATTGGGGTAGATTTTCATGTAGTAATGCTCTAGTTGTA
rJMFF031B04+ GGTGAAATTGGATGGCGAAGGAATTGGGGTAGATTTTCATGTAGTAATGCTCTAGTTGTA
JMFF031B04- GGTGAAATTGGATGGCGAAGGAATTGGGGTAGATTTTCATGTAGTAATGCTCTAGTTGTA
JMFN008D05- GGTGAAATTGGATGGCGAAGGAATTGGGGTAGATTTTCATGTAGTAATGCTCTAGTTGTA
____________________________________________________________
consensus GGTGAAATTGGATGGCGAAGGAATTGGGGTAGATTTTCATGTAGTAATGCTCTAGTTGTA
. : . : . : . : . : . :
rJMFF010A22+ AACTAGTAATTTTCACTGGTTACCTTTTATTTAGTGAAATTTTACAGACTCAGTTTAAAC
JMFF010A10- AACTAGTAATTTTCACTGGTTACCTTTTATTTAGTGAAATTTTACAGACTCAGTTTAAAC
JMFF010A22- AACTAGTAATTTTCACTGGTTACCTTTTATTTAGTGAAATTTTACAGACTCAGTTTAAAC
rJMSF021G07+ AACTAGTAATTTTCACTGGTTACCTTTTATTTAGTGAAATTTTACAGACTCAGTTTAAAC
rJMFF010A10+ AACTAGTAATTTTCACTGGTTACCTTTTATTTAGTGAAATTTTACAGACTCAGTTTAAAC
rJMFF031B04+ AACTAGTAATTTTCACTGGTTACCTTTTATTTAGTGAAATTTTACAGACTCAGTTTAAAC
JMFF031B04- AACTAGTAATTTTCACTGGTTACCTTTTATTTAGTGAAATTTTACAGACTCAGTTTAAAC
JMFN008D05- AACTAGTAATTTTCACTGGTTACCTTTTATTTAGTGAAATTTTACAGACTCAGTTTAAAC
____________________________________________________________
consensus AACTAGTAATTTTCACTGGTTACCTTTTATTTAGTGAAATTTTACAGACTCAGTTTAAAC
. : . : . : . : . : . :
rJMFF010A22+ ATGTGAAAAGA-CTGTTTGTTTCTTTAAACAATATAACTTGTTGATTTTATGATTTTACT
JMFF010A10- ATGTGAAAAGA-CTGTTTGTTTCTTTAAACAATATAACTTGTTGATTTTATGATTT
JMFF010A22- ATGTGAAAAGA-CTGTTTGTTTCTTTAAACAATATAACTTGTTGATTTTATGATTT
rJMSF021G07+ ATGTGAAAAGACCTGTTTGTTTCTTTAAACAATAT
rJMFF010A10+ ATGTGAAAAGA-CTGTTTGTTTCTTTAAACAATATAACTTGTTGATTTTATGATTTTACT
rJMFF031B04+ ATGTGAAAAGA-CTGTTTGTTTCTTTAAACAATATAACTTGTTGATTTTATGATTTTACT
JMFF031B04- ATGTGAAAAGA-CTGTTTGTTTCTTTAAACAATATAACTTGTTGATTTTATGATTTTACT
JMFN008D05- ATGTGAAAAGA-CTGTTTGTTTCTTTAAACAATATAACTTGTTGATTTTATGATTTXXXX
____________________________________________________________
consensus ATGTGAAAAGA-CTGTTTGTTTCTTTAAACAATATAACTTGTTGATTTTATGATTTTACT
. : . : . : . : . : . :
rJMFF010A22+ TTATATGTGAGAAT
rJMFF010A10+ TTATATGTGAGAATTTAGTCCTATAAAAAA
rJMFF031B04+ T
JMFF031B04- TTATATGTGAGAATTTAGTCCTAAAAAAAA
JMFN008D05- XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCG
____________________________________________________________
consensus TTATATGTGAGAATTTAGTCCTATAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNCCTCG