Contig 011669:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN005J15Sequence627011669 (4)
JMFN006O22Sequence588011669 (4)
JMFN036M09Sequence557011669 (4)
JMFN037K04Sequence497011669 (4)

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN005J15+                                            TTATTGAGCTGATAATTTAATAACAAA
                      ____________________________________________________________
consensus                                              TTATTGAGCTGATAATTTAATAACAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006O22-                                                     AAATAAAAATAGATATAG
JMFN036M09+                                                     AAATAAAAATAGATATAG
JMFN037K04+                                                     AAATAAAAATAGATATAG
JMFN005J15+           AAANCAATCCAATATTAAACAATATTAATAAAGCATAATAATAAATAAAAATAGATATAG
                      ____________________________________________________________
consensus             AAANCAATCCAATATTAAACAATATTAATAAAGCATAATAATAAATAAAAATAGATATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006O22-           AATTAATTAACTTTTGCAATTTAACTACAAAAAGATTATTAAAAATAATAATAAAAATAA
JMFN036M09+           AATTAATTAACTTTTGCAATTTAACTACAAAAAGATTATTAAAAATAATAATAAAAATAA
JMFN037K04+           AATTAATTAACTTTTGCAATTTAACTACAAAAAGATTATTAAAAATAATAATAAAAATAA
JMFN005J15+           AATTAATTAACTTNTGCAATTTAACTACAAAAAGATTATTAAAAATAATAATAAAAATAA
                      ____________________________________________________________
consensus             AATTAATTAACTTTTGCAATTTAACTACAAAAAGATTATTAAAAATAATAATAAAAATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006O22-           TGTTTATTAGTAGGCCGACAAGCTCCTCCGTCGTGGGTTTCCTCTTTCGGTGATGGGTAC
JMFN036M09+           TGTTTATTAGTAGGCCGACAAGCTCCTCCGTCGTGGGTTTCCTCTTTCGGTGATGGGTAC
JMFN037K04+           TGTTTATTAGTAGGCCGACAAGCTCCTCCGTCGTGGGTTTCCTCTTTCGGTGATGGGTAC
JMFN005J15+           TGTTTATTAGTAGGCCGACAAGCTCCTCCGTCGTGGGTTTCCTCTTTCGGTGATGGGTAC
                      ____________________________________________________________
consensus             TGTTTATTAGTAGGCCGACAAGCTCCTCCGTCGTGGGTTTCCTCTTTCGGTGATGGGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006O22-           TAGTGTGATGCGGTGGTGCGTGGTTCTAGAAGGCTTCGACGACGACGACGGGACGTGTTG
JMFN036M09+           TAGTGTGATGCGGTGGTGCGTGGTTCTAGAAGGCTTCGACGACGACGACGGGACGTGTTG
JMFN037K04+           TAGTGTGATGCGGTGGTGCGTGGTTCTAGAAGGCTTCGACGACGACGACGGGACGTGTTG
JMFN005J15+           TAGTGTGATGCGGTGGTGCGTGGTTCTAGAAGGCTTCGACGACAACGACGGGACGTGTTG
                      ____________________________________________________________
consensus             TAGTGTGATGCGGTGGTGCGTGGTTCTAGAAGGCTTCGACGACGACGACGGGACGTGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006O22-           TGACAGCTTGTGAGGTAGCGGCGGAGCTCGACGGCGCAGCGGCGGAGCTTGGTGAGCAGC
JMFN036M09+           TGACAGCTTGTGAGGTAGCGGCGGAGCTCGACGGCGCAGCGGCGGAGCTTGGTGAGCAGC
JMFN037K04+           TGACAGCTTGTGAGGTAGCGGCGGAGCTCGACGGCGCAGCGGCGGAGCTTGGTGAGCAGC
JMFN005J15+           TGACAGCTTGTGAGGTAGCGGCGGAGCTCGACGGCGCAGCGGCGGAGCTTGGTGAGCAGC
                      ____________________________________________________________
consensus             TGACAGCTTGTGAGGTAGCGGCGGAGCTCGACGGCGCAGCGGCGGAGCTTGGTGAGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006O22-           GGTGTCCCTCCTTAGTGGGCATGTGGTGCCTGCTGTCTGGTGCCGCAAGTCGTGGAACGG
JMFN036M09+           GGTGTCCCTCCTTAGTGGGCATGTGGTGCCTGCTGTCTGGTGCCGCAAGTCGTGGAACGG
JMFN037K04+           GGTGTCCCTCCTTAGTGGGCATGTGGTGCCTGCTGTCTGGTGCCGCAAGTCGTGGAACGG
JMFN005J15+           GGTGTCCCTCCTTAGTGGGCATGTGGTGCCTGCTGTCTGGTGCCGCAAGTCGTGGAACGG
                      ____________________________________________________________
consensus             GGTGTCCCTCCTTAGTGGGCATGTGGTGCCTGCTGTCTGGTGCCGCAAGTCGTGGAACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006O22-           GTGAGTTCGGCAGGTGCGACGTCTCCGTGAAGCAGGCCCGTATGCCTTCATCTCGAAGTA
JMFN036M09+           GTGAGTTCGGCAGGTGCGACGTCTCCGTGAAGCAGGCCCGTATGCCTTCATCTCGAAGTA
JMFN037K04+           GTGAGTTCGGCAGGTGCGACGTCTCCGTGAAGCAGGCCCGTATGCCTTCATCTCGAAGTA
JMFN005J15+           GTGAGTTCGGCAGGTGCGACGTCTCCGTGAAGCAGGCCCGTATGCCTTCATCTCGAAGTA
                      ____________________________________________________________
consensus             GTGAGTTCGGCAGGTGCGACGTCTCCGTGAAGCAGGCCCGTATGCCTTCATCTCGAAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006O22-           GGGCAGCAGCAACGGGCTATGTAGGCGGGCCATCTCCTCCTCTATTTTCTGAAAAGAAGG
JMFN036M09+           GGGCAGCAGCAACGGGCTATGTAGGCGGGCCATCTCCTCCTCTATTTTCTGAAAAGAAGG
JMFN037K04+           GGGCAGCAGCAACGGGCTATGTAGGCGGGCCATCTCCTCCTCTATTTTCTGAAAAGAAGG
JMFN005J15+           GGGCAGCAGCAACGGGCTATGTAGGCGGGCCATCTCCTCCTCTATTTTCTGAAAAGAAGG
                      ____________________________________________________________
consensus             GGGCAGCAGCAACGGGCTATGTAGGCGGGCCATCTCCTCCTCTATTTTCTGAAAAGAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006O22-           AGCAGCAGGTTTCCGATGAAGCAACAACGGAGGTGACCGGACGGCAGTGGCTGGTTGCTC
JMFN036M09+           AGCAGCAGGTTTCCGATGAAGCAACAACGGAGGTGACCGGACGGCAGTGGCTGGTTGCTC
JMFN037K04+           AGCAGCAGGTTTCCGATGAAGCAACAACGGAGGTGACCGGACGGC               
JMFN005J15+           AGCAGCAGGTTTCCGATGAAGCAACAACGGAGGTGACCGGACGGCAGTGGCTGGTTGCTC
                      ____________________________________________________________
consensus             AGCAGCAGGTTTCCGATGAAGCAACAACGGAGGTGACCGGACGGCAGTGGCTGGTTGCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN006O22-           CAAGGAATCCGGCCGCTATCGCCGAACACCAAGAACGGCCGCCGCCTCCGGAATTGGTC 
JMFN036M09+           CAAGGAATCCGGCCGCTATCGCCGAACACCAAGAACGGCCGCCGCCTCCGGAATTGGTC 
JMFN005J15+           CAAGGAATCCGGCCGCTATCGCCGAACACCAAGAACGGCCGCCGCCTCCGGAATTGGTCC
                      ____________________________________________________________
consensus             CAAGGAATCCGGCCGCTATCGCCGAACACCAAGAACGGCCGCCGCCTCCGGAATTGGTCC