Contig 011666:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN004N18Sequence623011666 (3)ref|XP_009790329.1|3e-21PREDICTED: transcription factor PAR2-like [Nicotiana sylvestris]
JMFN038K15Sequence604011666 (3)ref|XP_009790329.1|2e-21PREDICTED: transcription factor PAR2-like [Nicotiana sylvestris]
JMFN040O01Sequence611011666 (3)ref|XP_009790329.1|2e-21PREDICTED: transcription factor PAR2-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN004N18+                                                GTGATATATATAACTACTACTTT
                      ____________________________________________________________
consensus                                                  GTGATATATATAACTACTACTTT
 
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JMFN040O01+                TTGAAGAAAGATGGAGTAAAAACACTCATCTGCGCATTACATTGCTGGGAATTTA
JMFN038K15+                TTGAAGAAAGATGGAGTAAAAACACTCATCTGCGCATTACATTGCTGGGAATTTA
JMFN004N18+           CATCTTTGAAGAAAGATGGAGTAAAAACACTCATCTGCGCATTACATTGCTGGGAATTTA
                      ____________________________________________________________
consensus             CATCTTTGAAGAAAGATGGAGTAAAAACACTCATCTGCGCATTACATTGCTGGGAATTTA
 
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JMFN040O01+           GAGATAAGAAGCTAAGGAAAAAATAGGAAGAAGAAAAAGATGGCCTTTTTTTTTTGTTGT
JMFN038K15+           GAGATAAGAAGCTAAGGAAAAAATAGGAAGAAGAAAAAGATGGCCTTTTTTTTTTGTTGT
JMFN004N18+           GAGATAAGAAGCTAAGGAAAAAATAGGAAGAAGAAAAAGATGGCCTTTTTTTTTTGTTGT
                      ____________________________________________________________
consensus             GAGATAAGAAGCTAAGGAAAAAATAGGAAGAAGAAAAAGATGGCCTTTTTTTTTTGTTGT
 
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JMFN040O01+           TGTTGTTTTCACCTTTTCCGAACATTTTTGCATCTCAGGCGGCGGAGCTGAGTACTATAC
JMFN038K15+           TGTTGTTTTCACCTTTTCCGAACATTTTTGCATCTCAGGCGGCGGAGCTGAGTACTATAC
JMFN004N18+           TGTTGTTTTCACCTTTTCCGAACATTTTTGCATCTCAGGCGGCGGAGCTGAGTACTATAC
                      ____________________________________________________________
consensus             TGTTGTTTTCACCTTTTCCGAACATTTTTGCATCTCAGGCGGCGGAGCTGAGTACTATAC
 
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JMFN040O01+           ATCGTTTTGGCGATGCGGATTGGCGGCGTAAATGTCGATGAGTTTCTGCAAAATGGAGAC
JMFN038K15+           ATCGTTTTGGCGATGCGGATTGGCGGCGTAAATGTCGATGAGTTTCTGCAAAATGGAGAC
JMFN004N18+           ATCGTTTTGGCGATGCGGATTGGCGGCGTAAATGTCGATGAGTTTCTGCAAAATGGAGAC
                      ____________________________________________________________
consensus             ATCGTTTTGGCGATGCGGATTGGCGGCGTAAATGTCGATGAGTTTCTGCAAAATGGAGAC
 
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JMFN040O01+           TTGGGTTCGGAGGAGGACAATGTAGTCCGCGGTTTCTTGGAAGAGCTGGTCGCCTTTCCG
JMFN038K15+           TTGGGTTCGGAGGAGGACAATGTAGTCCGCGGTTTCTTGGAAGAGCTGGTCGCCTTTCCG
JMFN004N18+           TTGGGTTCGGAGGAGGACAATGTAGTCCGCGGTTTCTTGGAAGAGCTGGTCGCCTTTCCG
                      ____________________________________________________________
consensus             TTGGGTTCGGAGGAGGACAATGTAGTCCGCGGTTTCTTGGAAGAGCTGGTCGCCTTTCCG
 
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JMFN040O01+           TTCACCGTTGAGCGCAGGGATGAGCTGTTTGAGCGCCTCCAGCTTTTCCGACACGGAGGA
JMFN038K15+           TTCACCGTTGAGCGCAGGGATGAGCTGTTTGAGCGCCTCCAGCTTTTCCGACACGGAGGA
JMFN004N18+           TTCACCGTTGAGCGCAGGGATGAGCTGTTTGAGCGCCTCCAGCTTTTCCGACACGGAGGA
                      ____________________________________________________________
consensus             TTCACCGTTGAGCGCAGGGATGAGCTGTTTGAGCGCCTCCAGCTTTTCCGACACGGAGGA
 
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JMFN040O01+           GTAGGCCGGAGCGCCGTCGCCGGCGGCGGCGCCCTTGCAGGGGGTTCTCCGGCGGGTGGA
JMFN038K15+           GTAGGCCGGAGCGCCGTCGCCGGCGGCGGCGCCCTTGCAGGGGGTTCTCCGGCGGGTGGA
JMFN004N18+           GTAGGCCGGAGCGCCGTCGCCGGCGGCGGCGCCCTTGCAGGGGGTTCTCCGGCGGGTGGA
                      ____________________________________________________________
consensus             GTAGGCCGGAGCGCCGTCGCCGGCGGCGGCGCCCTTGCAGGGGGTTCTCCGGCGGGTGGA
 
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JMFN040O01+           TCTTCTTCTGGTCTTTCTCATTGCCAGGTCGCCGGAGCTCGGCGTCGGCCTCGACCCCAT
JMFN038K15+           TCTTCTTCTGGTCTTTCTCATTGCCAGGTCGCCGGAGCTCGGCGTCGGCCTCGACCCCAT
JMFN004N18+           TCTTCTTCTGGTCTTTCTCATTGCCAGGTCGCCGGAGCTCGGCGTCGGCCTCGACCCCAT
                      ____________________________________________________________
consensus             TCTTCTTCTGGTCTTTCTCATTGCCAGGTCGCCGGAGCTCGGCGTCGGCCTCGACCCCAT
 
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JMFN040O01+           CTTCTCGGTTTAATTTCTTCGATCGGCTCAGCAATGGCGGAATGGAATTCAGCAGAGAAG
JMFN038K15+           CTTCTCGGTTTAATTTCTTCGATCGGCTCAGCAATGGCGGAATGGAATTCAGCAGAGAAG
JMFN004N18+           CTTCTCGGTTTAATTTCTTCGATCGGCTCAGCAATGGCGGAATGGAATTCAGCAGAGAAG
                      ____________________________________________________________
consensus             CTTCTCGGTTTAATTTCTTCGATCGGCTCAGCAATGGCGGAATGGAATTCAGCAGAGAAG
 
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JMFN040O01+           AGAAGAA                                                     
JMFN038K15+           AGAAGAA                                                     
JMFN004N18+           AGAAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGAGAGAAGACGAAGAAGAAA
                      ____________________________________________________________
consensus             AGAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGAGAGAAGACGAAGAAGAAA