Contig 011661:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001I08Sequence485011661 (4)emb|CBI32808.3|2e-89unnamed protein product [Vitis vinifera]670009596 (2)gb|ACF83522.1|1e-99unknown [Zea mays]
JMFN002F08Sequence573011661 (4)emb|CBI32808.3|3e-116unnamed protein product [Vitis vinifera]
JMFN019O11Sequence619011661 (4)emb|CBI32808.3|1e-116unnamed protein product [Vitis vinifera]
JMSF028K20Sequence459011661 (4)emb|CBI32808.3|1e-80unnamed protein product [Vitis vinifera]703009596 (2)gb|ACF83522.1|2e-116unknown [Zea mays]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN019O11+                                      TCAACCACGGTATCCGACACCTTTGGTGATGGG
JMFN002F08+                                      TCAACCACGGTATCCGACACCTTTGGTGATGGG
                      ____________________________________________________________
consensus                                        TCAACCACGGTATCCGACACCTTTGGTGATGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN019O11+           AACACAGAGAACGTGAGCATCATTCTATCAGGGTATTCCTCTCTGATCTTCGAGATCAGC
JMFN002F08+           AACACAGAGAACGTGAGCATCATTCTATCAGGGTATTCCTCTCTGATCTTCGAGATCAGC
                      ____________________________________________________________
consensus             AACACAGAGAACGTGAGCATCATTCTATCAGGGTATTCCTCTCTGATCTTCGAGATCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN019O11+           AGGGTACCCATACCCGAACCTGTTCCACCACCGAGGGAGTGGCAAACCTGGAAACCTTGA
JMFN002F08+           AGGGTACCCATACCCGAACCTGTTCCACCACCGAGGGAGTGGCAAACCTGGAAACCTTGA
                      ____________________________________________________________
consensus             AGGGTACCCATACCCGAACCTGTTCCACCACCGAGGGAGTGGCAAACCTGGAAACCTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN019O11+           AGGCAGTCAGAGTTCTCAGCTTCCTTCCTCACAACATCAAGAACCGAGTCAATAAGCTCT
JMFF001I08+           AGGCAGTCAGAGTTCTCAGCTTCCTTCCTCACAACATCAAGAACCGAGTCAATAAGCTCT
JMSF028K20+                                       TCACAACATCAAGANCCGAGTCAATAAGCTNT
JMFN002F08+           AGGCAGTCAGAGTTCTCAGCTTCCTTCCTCACAACATCAAGAACCGAGTCAATAAGCTCT
                      ____________________________________________________________
consensus             AGGCAGTCAGAGTTCTCAGCTTCCTTCCTCACAACATCAAGAACCGAGTCAATAAGCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN019O11+           GCACCTTCGGTATAGTGCCCTTTGGCCCAGTTGTTTCCAGCACCAGACTGACCAAACACA
JMFF001I08+           GCACCTTCGGTATAGTGCCCTTTGGCCCAGTTGTTTCCAGCACCAGACTGACCAAACACA
JMSF028K20+           GCACCTTCGGTATAGTGCCCTTTGGCCCAGTTGTTTCCAGCACCAGACTGACCAAACACA
JMFN002F08+           GCACCTTCGGTATAGTGCCCTTTGGCCCAGTTGTTTCCAGCACCAGACTGACCAAACACA
                      ____________________________________________________________
consensus             GCACCTTCGGTATAGTGCCCTTTGGCCCAGTTGTTTCCAGCACCAGACTGACCAAACACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN019O11+           AAGTTATCAGGCCTAAAGATCTGGCCATAAGGACCCGTCCTAACGCTGTCCATCGTGCCG
JMFF001I08+           AAGTTATCAGGCCTAAAGATCTGGCCATAAGGACCCGTCCTAACGCTGTCCATCGTGCCG
JMSF028K20+           AAGTTATCAGGCCTAAAGATCTGGCCATAAGGACCCGTCCTAACGCTGTCCATCGTGCCG
JMFN002F08+           AAGTTATCAGGCCTAAAGATCTGGCCATAAGGACCCGTCCTAACGCTGTCCATCGTGCCG
                      ____________________________________________________________
consensus             AAGTTATCAGGCCTAAAGATCTGGCCATAAGGACCCGTCCTAACGCTGTCCATCGTGCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN019O11+           GGCTCAAGATCCATGAGCACAGCACGAGGAACAAATCGTCCACAGGATGCCTCATTGTAA
JMFF001I08+           GGCTCAAGATCCATGAGCACAGCACGAGGAACAAATCGTCCACAGGATGCCTCATTGTAA
JMSF028K20+           GGCTCAAGATCCATGAGCACAGCACGAGGAACAAATCGTCCACAGGATGCCTCATTGTAA
JMFN002F08+           GGCTCAAGATCCATGAGCACAGCACGAGGAACAAATCGTCCACAGGATGCCTCATTGTAA
                      ____________________________________________________________
consensus             GGCTCAAGATCCATGAGCACAGCACGAGGAACAAATCGTCCACAGGATGCCTCATTGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN019O11+           TACACATTCACACGCTCCAATTGCAAATCAGAGGTTCCAACATATCGCCCAGTCGGATCT
JMFF001I08+           TACACATTCACACGCTCCAATTGCAAATCAGAGGTTCCAACATATCGCCCAGTCGGATCT
JMSF028K20+           TACACATTCACACGCTCCAATTGCAAATCAGAGGTTCCAACATATCGCCCAGTCGGATCT
JMFN002F08+           TACACATTCACACGCTCCAATTGCAAATCAGAGGTTCCAACATATCGCCCAGTCGGATCT
                      ____________________________________________________________
consensus             TACACATTCACACGCTCCAATTGCAAATCAGAGGTTCCAACATATCGCCCAGTCGGATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN019O11+           ATGCCGTGCTCATCACAGACAACTTCCCAGAACTTGGATCCAATCTGATTTCCACACTGT
JMFF001I08+           ATGCCGTGCTCATCACAGACAACTTCCCAGAACTTGGATCCAATCTGATTTCCACACTGT
JMSF028K20+           ATGCCGTGCTCATCACAGACAACTTCCCAGAACTTGGATCCAATCTGATTTCCACACTGT
JMFN002F08+           ATGCCGTGCTCATCACAGACAACTTCCCAGAACTTGGATCCAATCTGATTTCCACACTGT
                      ____________________________________________________________
consensus             ATGCCGTGCTCATCACAGACAACTTCCCAGAACTTGGATCCAATCTGATTTCCACACTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN019O11+           CCACCTTGAACGTGAAGGATTTCTCTCAT                               
JMFF001I08+           CCACCTTGAACGTGAAGGATTTCTCTCAT                               
JMSF028K20+           CCACCTTGAACGTGAAGGATTTCTCTCAT                               
JMFN002F08+           CCACCTTGAACGTGAAGGATTTCTCTCATGATTCCTCTTCAGAAAATAGGAAGCAATCTG
                      ____________________________________________________________
consensus             CCACCTTGAACGTGAAGGATTTCTCTCATGATTCCTCTTCAGAAAATAGGAAGCAATCTG