Contig 011655:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028N24Sequence558011655 (4)ref|XP_004239833.1|5e-112PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl
JMFF043A14Sequence646011655 (4)ref|XP_004239833.1|1e-126PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl355001348 (5)emb|CDP01683.1|7e-04unnamed protein product [Coffea canephora]
JMFF050M10Sequence561011655 (4)ref|XP_004239833.1|5e-102PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl289001348 (5)
JMSF020B16Sequence696011655 (4)ref|XP_004239833.1|6e-145PREDICTED: glutamate decarboxylase-like [Solanum lycopersicum] gb|AHI13795.1| gl728001348 (5)emb|CDP01683.1|5e-48unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF020B16+                                                              AGTGTGAGC
                      ____________________________________________________________
consensus                                                                AGTGTGAGC
 
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JMSF020B16+           CCAAGATGGCGGCGACGCAGATTGTGTTCTCGTCCACCATTTCCACGGCTTTCTCAGGGT
                      ____________________________________________________________
consensus             CCAAGATGGCGGCGACGCAGATTGTGTTCTCGTCCACCATTTCCACGGCTTTCTCAGGGT
 
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JMSF020B16+           CCATCACATAGTACCCATCGCTCAACTTCACCTCTTTCAGTTCAACTTCAAAGTATCTCG
JMFF043A14+                 CATAGTACCCATCGCTCAACTTCACCTCTTTCAGTTCAACTTCAAAGTATCTCG
                      ____________________________________________________________
consensus             CCATCACATAGTACCCATCGCTCAACTTCACCTCTTTCAGTTCAACTTCAAAGTATCTCG
 
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JMSF020B16+           CAAATTTCTCCCAACATACCTGGACATTGGCACCAGTAACAATGTTGGGCTTGTCATGTG
JMFF043A14+           CAAATTTCTCCCAACATACCTGGACATTGGCACCAGTAACAATGTTGGGCTTGTCATGTG
JMFF050M10+                                                  CAATGTTGGGCTTGTCATGTG
                      ____________________________________________________________
consensus             CAAATTTCTCCCAACATACCTGGACATTGGCACCAGTAACAATGTTGGGCTTGTCATGTG
 
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JMSF020B16+           GTTTGCCCTGGGCTTTCATCTTGTTTTGCCATTTTCTCTTGAACGCTAATCCGGCCAGCA
JMFF043A14+           GTTTGCCCTGGGCTTTCATCTTGTTTTGCCATTTTCTCTTGAACGCTAATCCGGCCAGCA
JMFF050M10+           GTTTGCCCTGGGCTTTCATCTTGTTTTGCCATTTTCTCTGGAACGCTAATCCGGCCAGCA
                      ____________________________________________________________
consensus             GTTTGCCCTGGGCTTTCATCTTGTTTTGCCATTTTCTCTTGAACGCTAATCCGGCCAGCA
 
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JMSF020B16+           TAATGGCTTCCGACGACCCAACCGTCCCGACGCCGACTGCCGCTTCGCCGTCTCCCAGCG
JMFF043A14+           TAATGGCTTCCGACGACCCAACCGTCCCGACGCCGACTGCCGCTTCGCCGTCTCCCAGCG
JMFF050M10+           TAATGGCTTCCGACGACCCAACCGTCCCGACGCCGACTGCCGCTTCGCCGTCTCCCAGCG
                      ____________________________________________________________
consensus             TAATGGCTTCCGACGACCCAACCGTCCCGACGCCGACTGCCGCTTCGCCGTCTCCCAGCG
 
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JMSF020B16+           GTGCATTGAAAAGATGGGCAATCATGTTCACACATCGGTTCTGAAGCTCAGTGGTGACAG
JMFF028N24+                                                   CTGAAGCTCAGTGGTGACAG
JMFF043A14+           GTGCATTGAAAAGATGGGCAATCATGTTCACACATCGGTTCTGAAGCTCAGTGGTGACAG
JMFF050M10+           GTGCATTGAAAAGATGGGCAATCATGTTCACACATCGGTTCTGAAGCTCAGTGGTGACAG
                      ____________________________________________________________
consensus             GTGCATTGAAAAGATGGGCAATCATGTTCACACATCGGTTCTGAAGCTCAGTGGTGACAG
 
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JMSF020B16+           GATACTCATCCATGTCAACGTAGTTCTTGTTAATGGAGTCCATGATAAGCTTATCGCACT
JMFF028N24+           GATACTCATCCATGTCAACGTAGTTCTTGTTAATGGAGTCCATGATAAGCTTATCGCACT
JMFF043A14+           GATACTCATCCATGTCAACGTAGTTCTTGTTAATGGAGTCCATGATAAGCTTATCGCACT
JMFF050M10+           GATACTCATCCATGTCAACGTAGTTCTTGTTAATGGAGTCCATGATAAGCTTATCGCACT
                      ____________________________________________________________
consensus             GATACTCATCCATGTCAACGTAGTTCTTGTTAATGGAGTCCATGATAAGCTTATCGCACT
 
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JMSF020B16+           CAGGCTCCATCCAAGTGGTCACAAACGACGCCAAGTTCAACCTCGGATTCCCGTCCAGCA
JMFF028N24+           CAGGCTCCATCCAAGTGGTCACAAACGACGCCAAGTTCAACCTCGGATTCCCGTCCAGCA
JMFF043A14+           CAGGCTCCATCCAAGTGGTCACAAACGACGCCAAGTTCAACCTCGGATTCCCGTCCAGCA
JMFF050M10+           CAGGCTCCATCCAAGTGGTCACAAACGACGCCAAGTTCAACCTCGGATTCCCGTCCAGCA
                      ____________________________________________________________
consensus             CAGGCTCCATCCAAGTGGTCACAAACGACGCCAAGTTCAACCTCGGATTCCCGTCCAGCA
 
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JMSF020B16+           TCAGCTCATCGTTTATGATCTGGTACGCCGCTTCCTTGGGGATCGAGTTCTCCGGCATTT
JMFF028N24+           TCAGCTCATCGTTTATGATCTGGTACGCCGCTTCCTTGGGGATCGAGTTCTCCGGCATTT
JMFF043A14+           TCAGCTCATCGTTTATGATCTGGTACGCCGCTTCCTTGGGGATCGAGTTCTCCGGCATTT
JMFF050M10+           TCAGCTCATCGTTTATGATCTGGTACGCCGCTTCCTTGGGGATCGAGTTCTCCGGCATTT
                      ____________________________________________________________
consensus             TCAGCTCATCGTTTATGATCTGGTACGCCGCTTCCTTGGGGATCGAGTTCTCCGGCATTT
 
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JMSF020B16+           TAAACCTAGGAAGGGGAGCTCGAACGTATCTGGAAGCGAAGGTTGAGCTGATGGAGGCAT
JMFF028N24+           TAAACCTAGGAAGGGGAGCTCGAACGTATCTGGAAGCGAAGGTTGAGCTGATGGAGGCAT
JMFF043A14+           TAAACCTAGGAAGGGGAGCTCGAACGTATCTGGAAGCGAAGGTTGAGCTGATGGAGGCAT
JMFF050M10+           TAAACCTAGGAAGGGGAGCTCGAACGTATCTGGAAGCGAAGGTTGAGCTGATGGAGGCAT
                      ____________________________________________________________
consensus             TAAACCTAGGAAGGGGAGCTCGAACGTATCTGGAAGCGAAGGTTGAGCTGATGGAGGCAT
 
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JMSF020B16+           CGGACTCGGAAGCTGCCCTCGACAAAACCATGGTGAGACTGTACTGATCGGACGACGGAA
JMFF028N24+           CGGACTCGGAAGCTGCCCTCGACAAAACCATGGTGAGACTGTACTGATCGGACGACGGAA
JMFF043A14+           CGGACTCGGAAGCTGCCCTCGACAAAACCATGGTGAGACTGTACTGATCGGACGACGGAA
JMFF050M10+           CGGACTCGGAAGCTGCCCTCGACAAAACCATGGTGAGACTGTACTGATCGGACGACGGAA
                      ____________________________________________________________
consensus             CGGACTCGGAAGCTGCCCTCGACAAAACCATGGTGAGACTGTACTGATCGGACGACGGAA
 
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JMSF020B16+           GAGAGAATGGGCGGTGAGAATTTT                                    
JMFF028N24+           GAGAGAATGGGCGGTGAGAATTTT                                    
JMFF043A14+           GAGAGAATGGGCGGTGAGAATTTTATAATCAACGCTGAACAAGAAGGAGGAT        
JMFF050M10+           GAGAGAATGGGCGGTGAGAATTTTATAATCAACGCTGAACAAGAAGGAGGATCGCGATGA
                      ____________________________________________________________
consensus             GAGAGAATGGGCGGTGAGAATTTTATAATCAACGCTGAACAAGAAGGAGGATCGCGATGA