Contig 011653:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047O01Sequence480011653 (7)ref|XP_006351360.1|5e-69PREDICTED: eukaryotic translation initiation factor NCBP-like [Solanum tuberosu448011653 (7)ref|XP_002525418.1|6e-37eukaryotic translation initiation factor 4e type, putative [Ricinus communis] g
JMFF050E23Sequence604011653 (7)ref|XP_006351360.1|2e-95PREDICTED: eukaryotic translation initiation factor NCBP-like [Solanum tuberosu578011653 (7)ref|XP_003618951.1|2e-78Eukaryotic translation initiation factor 4E type 3 [Medicago truncatula] gb|AES
JMFN007F12Sequence641011653 (7)ref|XP_006351360.1|2e-118PREDICTED: eukaryotic translation initiation factor NCBP-like [Solanum tuberosu
JMFN007H06Sequence530011653 (7)ref|XP_003618951.1|4e-68Eukaryotic translation initiation factor 4E type 3 [Medicago truncatula] gb|AES
JMFN044E14Sequence597011653 (7)ref|XP_006351360.1|2e-95PREDICTED: eukaryotic translation initiation factor NCBP-like [Solanum tuberosu

Alignment

This contig is upended


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rJMFF047O01-                   ACCCTGGAGAGTTTTTTTTTTTTTTTTGCAAAAGATTGATCCCAACACTAA
JMFN007H06+                                                         GATCCCAACACTAA
rJMFF050E23-                                              GCAAAAGATTGATCCCAACACTAA
                      ____________________________________________________________
consensus                      ACCCTGGAGAGTTTTTTTTTTTTTTTTGCAAAAGATTGATCCCAACACTAA
 
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rJMFF047O01-          AATTTTAGAGATAAGTGTGTTTTAATACATGGAGTTTTGAAATACAAAGCACCAAAGTGT
JMFN007H06+           AATTTTAGAGATAAGTGTGTTTTAATACATGGAGTTTTGAAATACAAAGCACCAAAGTGT
rJMFF050E23-          AATTTTAGAGATAAGTGTGTTTTAATACATGGAGTTTTGAAATACAAAGCACCAAAGTGT
                      ____________________________________________________________
consensus             AATTTTAGAGATAAGTGTGTTTTAATACATGGAGTTTTGAAATACAAAGCACCAAAGTGT
 
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rJMFF047O01-          CCTTTGACTTTTGCCCTTTTCTCTGAGGAAATAAGATCTCCATGGTTGTTTATGGTCATG
JMFN007H06+           CCTTTGACTTTTGCCCTTTTCTCTGAGGAAATAAGATCTCCATGGTTGTTTATGGTCATG
rJMFF050E23-          CCTTTGACTTTTGCCCTTTTCTCTGAGGAAATAAGATCTCCATGGTTGTTTATGGTCATG
                      ____________________________________________________________
consensus             CCTTTGACTTTTGCCCTTTTCTCTGAGGAAATAAGATCTCCATGGTTGTTTATGGTCATG
 
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rJMFF047O01-          ATCCGTACACAGACCAACAAAATCATCGCCTTTTAAGTCCCGGTCTTGCATTTCAGGACA
JMFN007H06+           ATCCGTACACAGACCAACAAAATCATCGCCTTTTAAGTCCCGGTCTTGCATTTCAGGACA
rJMFF050E23-          ATCCGTACACAGACCAACAAAATCATCGCCTTTTAAGTCCCGGTCTTGCATTTCAGGACA
                      ____________________________________________________________
consensus             ATCCGTACACAGACCAACAAAATCATCGCCTTTTAAGTCCCGGTCTTGCATTTCAGGACA
 
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rJMFF047O01-          GAAACATGTACTTTTAGCCTCTCAACCAAGTGTTCCGATATGATGAGTTGTCACGCAGAG
JMFN007H06+           GAAACATGTACTTTTAGCCTCTCAACCAAGTGTTCCGATATGATGAGTTGTCACGCAGAG
rJMFF050E23-          GAAACATGTACTTTTAGCCTCTCAACCAAGTGTTCCGATATGATGAGTTGTCACGCAGAG
                      ____________________________________________________________
consensus             GAAACATGTACTTTTAGCCTCTCAACCAAGTGTTCCGATATGATGAGTTGTCACGCAGAG
 
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rJMFF047O01-          AAGCGTCGTGAGGCTTGTATTCCATGACATAGCCACTAGGTAGCTTCAAGTGCCGCTTGA
JMFN007H06+           AAGCGTCGTGAGGCTTGTATTCCATGACATAGCCACTAGGTAGCTTCAAGTGCCGCTTGA
rJMFF050E23-          AAGCGTCGTGAGGCTTGTATTCCATGACATAGCCACTAGGTAGCTTCAAGTGCCGCTTGA
JMFN007F12+                                                  GTAGCTTCAAGTGCCGCTTGA
                      ____________________________________________________________
consensus             AAGCGTCGTGAGGCTTGTATTCCATGACATAGCCACTAGGTAGCTTCAAGTGCCGCTTGA
 
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rJMFF047O01-          TTGAGTCTCTGAGTGCCATTACAGCCTGATGGTCTGATGCATTGCGGTTCCACACACTTA
JMFN007H06+           TTGAGTCTCTGAGTGCCATTACAGCCTGATGGTCTGATGCATTGCGGTTCCACACACTTA
rJMFF050E23-          TTGAGTCTCTGAGTGCCATTACAGCCTGATGGTCTGATGCATTGCGGTTCCACACACTTA
JMFN007F12+           TTGAGTCTCTGAGTGCCATTACAGCCTGATGGTCTGATGCATTGCGGTTCCACACACTTA
JMFN044E14+                                              GATGCATTGCGGTCCCACACACTTA
JMFF050E23+                                                                   CTTA
                      ____________________________________________________________
consensus             TTGAGTCTCTGAGTGCCATTACAGCCTGATGGTCTGATGCATTGCGGTTCCACACACTTA
 
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rJMFF047O01-          ATATATCCTCATTGAATCGAACGCTTAGGACTGCACC                       
JMFN007H06+           ATATATCCTCATTGAATCGAACGCTTAGGACTGCACCGCATATGTTGTCACCATAATCAA
rJMFF050E23-          ATATATCCTCATTGAATCGAACGCTTAGGACTGCACCGCATATGTTGTCACCATAATCAA
JMFN007F12+           ATATATCCTCATTGAATCGAACGCTTAGGACTGCACCGCATATGTTGTCACCATAATCAA
JMFN044E14+           ATATATCCTCATG-AATCGAACGCTTAGGACTGCACCGCATATGTTGTCACCATAATCAA
JMFF050E23+           ATATATCCTCATGNAATCGAACGCTTAGGACTGCACCGCATATGTNGTCACCATAATCAA
                      ____________________________________________________________
consensus             ATATATCCTCATTGAATCGAACGCTTAGGACTGCACCGCATATGTTGTCACCATAATCAA
 
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JMFN007H06+           GTTGATCGCCCACCAATGCCAGAACCAAGTCCTCCCAAAAGCGACCAGATACAGCTTTTT
rJMFF050E23-          GTTGATCGCCCACCAATGCCAGAACCAAGTCCTCCCAAAAGCGACCAGATACAGCTTTTT
JMFN007F12+           GTTGATCGCCCACCAATGCCAGAACCAAGTCCTCCCAAAAGCGACCAGATACAGCTTTTT
JMFN044E14+           GTTGATCGCCCACCAATGCCAGAACCAAGTCCTCCCAAAAGCGACCAGATACAGCTTTTT
JMFF047O01+                                                                   TTTT
JMFF050E23+           GTTGATCGCCCACCAATGCCAGAACCAAGTCCTCCCAAAAGCGACCAGATACAGCTTTTN
                      ____________________________________________________________
consensus             GTTGATCGCCCACCAATGCCAGAACCAAGTCCTCCCAAAAGCGACCAGATACAGCTTTTT
 
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JMFN007H06+           TGAATCGAATTATCCACTTGCCACCATTACAATTGG                        
rJMFF050E23-          TGAATCGAATTATCCACTTGCCACCATTACAATTGGCAGCATCCTCCCACAAAGGACGAA
JMFN007F12+           TGAATCGAATTATCCACTTGCCACCATTACAATTGGCAGCATCCTCCCACAAAGGACGAA
JMFN044E14+           TGAATCGAATTATCCACTTGCCACCATTACAATTGGCAGCATCCTCCCACAAAGGACGAA
JMFF047O01+           TGAATCGAATTATCCACTTGCCACCATTACAATTGGCAGCATCCTCCCACAAAGGACGAA
JMFF050E23+           TGAATCGAATTATCCACTTGCCACCATTACAATTGGCAGCATCCTCCCACAAAGGACGAA
                      ____________________________________________________________
consensus             TGAATCGAATTATCCACTTGCCACCATTACAATTGGCAGCATCCTCCCACAAAGGACGAA
 
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rJMFF050E23-          TTCCCTCTTTGAAA                                              
JMFN007F12+           TTCCCTCTTTGAAAAGATGCAAATCAGTTGGGCATGGCAATGTTGAGGGACGAGCCAAAT
JMFN044E14+           TTCCCTCTTTGAAAAGATGCAAATCAGTTGGGCATGGCAATGTTGAGGGACGAGCCAAAT
JMFF047O01+           TTCCCTCTTTGAAAAGATGCAAATCAGTTGGGCATGGCAATGTTGAGGGACGAGCCAAAT
JMFF050E23+           TTCCCTCTTTGAAAAGATGCAAATCAGTTGGGCATGGCAATGTTGAGGGACGAGCCAAAT
                      ____________________________________________________________
consensus             TTCCCTCTTTGAAAAGATGCAAATCAGTTGGGCATGGCAATGTTGAGGGACGAGCCAAAT
 
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JMFN007F12+           GGCAGTAGCAGACCCAAAAACCTTCAACTGTACTGAAATCCATTATTTTCTTTATGTTGT
JMFN044E14+           GGCAGTAGCAGACCCAAAAACCTTCAACTGTACTGAAATCCATTATTTTCTTTATGTTGT
JMFF047O01+           GGCAGTAGCAGACCCAAAAACCTTCAACTGTACTGAAATCCATTATTTTCTTTATGTTGT
JMFF050E23+           GGCAGTAGCAGACCCAAAAACCTTCAACTGTACTGAAATCCATTATTTTCTTTATGTTGT
                      ____________________________________________________________
consensus             GGCAGTAGCAGACCCAAAAACCTTCAACTGTACTGAAATCCATTATTTTCTTTATGTTGT
 
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JMFN007F12+           CCTCATATGATGTTTGTGTGCGAAGTCCTGGAGTCCGGCGAGTATACCAAAACACATATT
JMFN044E14+           CCTCATATGATGTTTGTGTGCGAAGTCCTGGAGTCCGGCGAGTATACCAAAACACATATT
JMFF047O01+           CCTCATATGATGTTTGTGTGCGAAGTCCTGGAGTCCGGCGAGTATACCAAAACACATATT
JMFF050E23+           CCTCATATGATGTTTGTGTGCGAAGTCCTGGAGTCCGGCGAGTATACCAAAACACATATT
                      ____________________________________________________________
consensus             CCTCATATGATGTTTGTGTGCGAAGTCCTGGAGTCCGGCGAGTATACCAAAACACATATT
 
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JMFN007F12+           TGTTCTTGAGAGGATGAAGGCCGGCTTTGAGATCTTGGGCGATGCGCTCGCGATCTTCGG
JMFN044E14+           TGTTCTTGAGAGGATGAAGGCCGGCTTTGAGATCTTGGGCGATGCGCTCGCGATCTTCGG
JMFF047O01+           TGTTCTTGAGAGGATGAAGGCCGGCTTTGAGATCTTGGGCGATGCGCTCGCGATCTTCGG
JMFF050E23+           TGTTCTTGAGAGGATGAAGGCCGGCTTTGAGATCTTGGGCGATGCGCTCGCGATCTTCGG
                      ____________________________________________________________
consensus             TGTTCTTGAGAGGATGAAGGCCGGCTTTGAGATCTTGGGCGATGCGCTCGCGATCTTCGG
 
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JMFN007F12+           CTTCTCTCTCCGTCAGAGAGGTCGGCGGCTGAGTGTTGTCGACGGTTCTGCTCTCAGTTT
JMFN044E14+           CTTCTCTCTCCGTCAGAGAGGTCGGCGGCTGAGTGTTGTCGACGGTTCTGCTCTCAGTTT
JMFF047O01+           CTTCTCTCTCCGTCAGAGAGGTCGGCGGCTGAGTGTTGTCGACGGTTCTGCTCTCAGTTT
JMFF050E23+           CTTCTCTCTCCGTCAGAGAGGTCGGCGGCTGAGTGTTGTCGACGGTTCTGCTCTCAGTTT
                      ____________________________________________________________
consensus             CTTCTCTCTCCGTCAGAGAGGTCGGCGGCTGAGTGTTGTCGACGGTTCTGCTCTCAGTTT
 
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JMFN007F12+           CTTTCTTCTCTGCTATCGCTTCTTCCATTAGGCTATCTCAGTTATGGAGGACTTCAAGCC
JMFN044E14+           CTTTCTTCTCTGCTATCGCTTCTTCCATTAGGCTATCTCAGTTATGGAGGACTTCAAGCC
JMFF047O01+           CTTTCTTCTCTGCTATCGCTTCTTCCATTAGGCTATCTCAGTTATGGAGGACTTCAAGCC
JMFF050E23+           CTTTCTTCTCTGCTATCGCTTCTTCCATTAGGCTATCTCAGTTATGGAGGACTTCAAGCC
                      ____________________________________________________________
consensus             CTTTCTTCTCTGCTATCGCTTCTTCCATTAGGCTATCTCAGTTATGGAGGACTTCAAGCC
 
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JMFN007F12+           CTAGCTGTGTTCTCTTTCAG                                        
JMFN044E14+           CTAGCTGTGTTCTCTTTCAGCGGATGATGTTCC                           
JMFF047O01+           CTAGCTGTGTTCTCTTTCAGCGGATGATGTTCCGAAATGGC                   
JMFF050E23+           CTAGCTGTGTTCTCTTTCAGCGGATGATGTTCCGAAATGGCGAGGCGAGAAAGGCGATGA
                      ____________________________________________________________
consensus             CTAGCTGTGTTCTCTTTCAGCGGATGATGTTCCGAAATGGCGAGGCGAGAAAGGCGATGA